data_SYP
# 
_chem_comp.id                                    SYP 
_chem_comp.name                                  "N-[2-({6-[(2-sulfanylethyl)amino]pyrimidin-4-yl}amino)ethyl]propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H19 N5 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-12-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        269.366 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SYP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PWY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SYP C1   C1   C 0 1 Y N N N N N 89.099 26.867 11.139 1.510  -1.060 -0.000 C1   SYP 1  
SYP C2   C2   C 0 1 Y N N N N N 89.853 25.871 10.535 0.703  -2.193 -0.001 C2   SYP 2  
SYP N3   N3   N 0 1 Y N N N N N 91.054 26.178 9.999  1.276  -3.395 -0.001 N3   SYP 3  
SYP C4   C4   C 0 1 Y N N N N N 91.520 27.432 10.046 2.588  -3.519 0.000  C4   SYP 4  
SYP N5   N5   N 0 1 Y N N N N N 90.813 28.413 10.622 3.386  -2.471 0.001  N5   SYP 5  
SYP C6   C6   C 0 1 Y N N N N N 89.607 28.158 11.172 2.891  -1.235 0.001  C6   SYP 6  
SYP N7   N7   N 0 1 N N N N N N 88.898 29.156 11.753 3.739  -0.138 0.001  N7   SYP 7  
SYP C8   C8   C 0 1 N N N N N N 87.598 28.875 12.345 3.182  1.218  0.000  C8   SYP 8  
SYP C9   C9   C 0 1 N N N N N N 86.722 30.059 11.953 4.323  2.237  0.000  C9   SYP 9  
SYP S10  S10  S 0 1 N N N N N N 84.979 29.590 12.089 3.635  3.915  -0.000 S10  SYP 10 
SYP N11  N11  N 0 1 N N N N N N 89.389 24.599 10.484 -0.678 -2.073 -0.001 N11  SYP 11 
SYP C12  C12  C 0 1 N N N N N N 88.094 24.274 11.063 -1.298 -0.745 -0.000 C12  SYP 12 
SYP C13  C13  C 0 1 N N N N N N 87.212 23.906 9.877  -2.820 -0.893 -0.000 C13  SYP 13 
SYP N14  N14  N 0 1 N N N N N N 86.125 23.122 10.444 -3.440 0.435  0.000  N14  SYP 14 
SYP C15  C15  C 0 1 N N N N N N 86.118 21.812 10.672 -4.782 0.552  0.000  C15  SYP 15 
SYP C16  C16  C 0 1 N N N N N N 84.885 21.253 11.259 -5.420 1.917  0.001  C16  SYP 16 
SYP O17  O17  O 0 1 N N N N N N 87.066 21.088 10.418 -5.478 -0.442 -0.000 O17  SYP 17 
SYP C18  C18  C 0 1 N N N N N N 84.917 20.643 12.630 -6.943 1.770  0.000  C18  SYP 18 
SYP H1   H1   H 0 1 N N N N N N 88.137 26.642 11.574 1.077  -0.071 -0.004 H1   SYP 19 
SYP H4   H4   H 0 1 N N N N N N 92.483 27.657 9.612  3.021  -4.508 0.000  H4   SYP 20 
SYP HN7  HN7  H 0 1 N N N N N N 89.470 29.508 12.494 4.700  -0.267 0.001  HN7  SYP 21 
SYP H8   H8   H 0 1 N N N N N N 87.184 27.933 11.957 2.569  1.359  -0.890 H8   SYP 22 
SYP H8A  H8A  H 0 1 N N N N N N 87.674 28.786 13.439 2.569  1.359  0.890  H8A  SYP 23 
SYP H9   H9   H 0 1 N N N N N N 86.928 30.906 12.625 4.936  2.096  0.891  H9   SYP 24 
SYP H9A  H9A  H 0 1 N N N N N N 86.943 30.352 10.916 4.937  2.096  -0.890 H9A  SYP 25 
SYP HS10 HS10 H 0 0 N N N N N N 84.376 30.684 11.729 4.732  4.693  -0.000 HS10 SYP 26 
SYP HN11 HN11 H 0 0 N N N N N N 89.326 24.365 9.514  -1.234 -2.868 -0.001 HN11 SYP 27 
SYP H12  H12  H 0 1 N N N N N N 88.177 23.433 11.768 -0.985 -0.199 0.890  H12  SYP 28 
SYP H12A H12A H 0 0 N N N N N N 87.680 25.134 11.610 -0.985 -0.198 -0.890 H12A SYP 29 
SYP H13  H13  H 0 1 N N N N N N 86.828 24.807 9.377  -3.132 -1.439 -0.891 H13  SYP 30 
SYP H13A H13A H 0 0 N N N N N N 87.774 23.321 9.135  -3.132 -1.440 0.889  H13A SYP 31 
SYP HN14 HN14 H 0 0 N N N N N N 85.294 23.622 10.688 -2.884 1.229  0.001  HN14 SYP 32 
SYP H16  H16  H 0 1 N N N N N N 84.168 22.085 11.312 -5.108 2.464  0.891  H16  SYP 33 
SYP H16A H16A H 0 0 N N N N N N 84.557 20.454 10.577 -5.108 2.464  -0.889 H16A SYP 34 
SYP H18  H18  H 0 1 N N N N N N 83.912 20.283 12.895 -7.254 1.223  -0.890 H18  SYP 35 
SYP H18A H18A H 0 0 N N N N N N 85.623 19.799 12.639 -7.255 1.223  0.890  H18A SYP 36 
SYP H18B H18B H 0 0 N N N N N N 85.240 21.399 13.360 -7.403 2.757  0.001  H18B SYP 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SYP C1  C2   DOUB Y N 1  
SYP C1  C6   SING Y N 2  
SYP C2  N3   SING Y N 3  
SYP C2  N11  SING N N 4  
SYP N3  C4   DOUB Y N 5  
SYP C4  N5   SING Y N 6  
SYP N5  C6   DOUB Y N 7  
SYP C6  N7   SING N N 8  
SYP N7  C8   SING N N 9  
SYP C8  C9   SING N N 10 
SYP C9  S10  SING N N 11 
SYP N11 C12  SING N N 12 
SYP C12 C13  SING N N 13 
SYP C13 N14  SING N N 14 
SYP N14 C15  SING N N 15 
SYP C15 C16  SING N N 16 
SYP C15 O17  DOUB N N 17 
SYP C16 C18  SING N N 18 
SYP C1  H1   SING N N 19 
SYP C4  H4   SING N N 20 
SYP N7  HN7  SING N N 21 
SYP C8  H8   SING N N 22 
SYP C8  H8A  SING N N 23 
SYP C9  H9   SING N N 24 
SYP C9  H9A  SING N N 25 
SYP S10 HS10 SING N N 26 
SYP N11 HN11 SING N N 27 
SYP C12 H12  SING N N 28 
SYP C12 H12A SING N N 29 
SYP C13 H13  SING N N 30 
SYP C13 H13A SING N N 31 
SYP N14 HN14 SING N N 32 
SYP C16 H16  SING N N 33 
SYP C16 H16A SING N N 34 
SYP C18 H18  SING N N 35 
SYP C18 H18A SING N N 36 
SYP C18 H18B SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SYP SMILES           ACDLabs              12.01 "O=C(NCCNc1ncnc(c1)NCCS)CC"                                                                                        
SYP SMILES_CANONICAL CACTVS               3.370 "CCC(=O)NCCNc1cc(NCCS)ncn1"                                                                                        
SYP SMILES           CACTVS               3.370 "CCC(=O)NCCNc1cc(NCCS)ncn1"                                                                                        
SYP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCC(=O)NCCNc1cc(ncn1)NCCS"                                                                                        
SYP SMILES           "OpenEye OEToolkits" 1.7.0 "CCC(=O)NCCNc1cc(ncn1)NCCS"                                                                                        
SYP InChI            InChI                1.03  "InChI=1S/C11H19N5OS/c1-2-11(17)14-4-3-12-9-7-10(13-5-6-18)16-8-15-9/h7-8,18H,2-6H2,1H3,(H,14,17)(H2,12,13,15,16)" 
SYP InChIKey         InChI                1.03  MXLYIGOSAJROJY-UHFFFAOYSA-N                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SYP "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-({6-[(2-sulfanylethyl)amino]pyrimidin-4-yl}amino)ethyl]propanamide" 
SYP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[2-[[6-(2-sulfanylethylamino)pyrimidin-4-yl]amino]ethyl]propanamide"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SYP "Create component"     2010-12-13 RCSB 
SYP "Modify aromatic_flag" 2011-06-04 RCSB 
SYP "Modify descriptor"    2011-06-04 RCSB 
SYP "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            SYP 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
