data_TCP
# 
_chem_comp.id                                    TCP 
_chem_comp.name                                  "5'-METHYLTHYMIDINE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               DT 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        256.255 
_chem_comp.one_letter_code                       T 
_chem_comp.three_letter_code                     TCP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1AC3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TCP CP     CP   C 0 1 N N N -3.019 9.245  21.282 2.582  -0.038 -4.606 CP     TCP 1  
TCP "O5'"  O5*  O 0 1 N N N -3.900 8.155  21.440 1.695  -0.714 -3.712 "O5'"  TCP 2  
TCP "C5'"  C5*  C 0 1 N N N -5.264 8.435  21.220 0.632  0.194  -3.420 "C5'"  TCP 3  
TCP "C4'"  C4*  C 0 1 N N R -6.047 7.166  20.895 -0.357 -0.470 -2.461 "C4'"  TCP 4  
TCP "O4'"  O4*  O 0 1 N N N -5.304 6.379  19.991 0.275  -0.759 -1.197 "O4'"  TCP 5  
TCP "C3'"  C3*  C 0 1 N N S -6.298 6.301  22.127 -1.495 0.511  -2.084 "C3'"  TCP 6  
TCP "O3'"  O3*  O 0 1 N N N -7.579 6.578  22.648 -2.553 0.469  -3.043 "O3'"  TCP 7  
TCP "C2'"  C2*  C 0 1 N N N -6.118 4.887  21.583 -1.965 -0.048 -0.717 "C2'"  TCP 8  
TCP "C1'"  C1*  C 0 1 N N R -5.751 5.047  20.111 -0.773 -0.889 -0.222 "C1'"  TCP 9  
TCP N1     N1   N 0 1 N N N -4.702 4.101  19.685 -0.311 -0.390 1.075  N1     TCP 10 
TCP C2     C2   C 0 1 N N N -5.048 3.006  18.914 0.115  0.880  1.186  C2     TCP 11 
TCP O2     O2   O 0 1 N N N -6.207 2.730  18.615 0.109  1.602  0.208  O2     TCP 12 
TCP N3     N3   N 0 1 N N N -4.006 2.195  18.486 0.540  1.366  2.367  N3     TCP 13 
TCP C4     C4   C 0 1 N N N -2.666 2.382  18.798 0.553  0.579  3.461  C4     TCP 14 
TCP O4     O4   O 0 1 N N N -1.806 1.637  18.333 0.941  1.016  4.529  O4     TCP 15 
TCP C5     C5   C 0 1 N N N -2.406 3.485  19.693 0.110  -0.761 3.357  C5     TCP 16 
TCP C5M    C5M  C 0 1 N N N -1.011 3.681  20.237 0.115  -1.663 4.565  C5M    TCP 17 
TCP C6     C6   C 0 1 N N N -3.414 4.287  20.096 -0.314 -1.222 2.161  C6     TCP 18 
TCP HP1    1HP  H 0 1 N N N -3.373 10.093 21.868 2.963  0.863  -4.128 HP1    TCP 19 
TCP HP2    2HP  H 0 1 N N N -2.038 8.958  21.663 3.414  -0.695 -4.859 HP2    TCP 20 
TCP HP3    3HP  H 0 1 N N N -3.342 10.092 21.929 2.044  0.231  -5.515 HP3    TCP 21 
TCP "H5'"  1H5* H 0 1 N N N -5.685 8.932  22.094 1.038  1.093  -2.957 "H5'"  TCP 22 
TCP "H5''" 2H5* H 0 0 N N N -5.392 9.094  20.362 0.119  0.461  -4.344 "H5''" TCP 23 
TCP "H4'"  H4*  H 0 1 N N N -6.994 7.421  20.421 -0.766 -1.379 -2.903 "H4'"  TCP 24 
TCP "H3'"  H3*  H 0 1 N N N -5.530 6.496  22.876 -1.110 1.526  -1.977 "H3'"  TCP 25 
TCP "HO3'" *HO3 H 0 0 N Y N -7.735 6.039  23.414 -3.263 1.030  -2.702 "HO3'" TCP 26 
TCP "H2'"  1H2* H 0 1 N N N -5.330 4.389  22.148 -2.847 -0.676 -0.848 "H2'"  TCP 27 
TCP "H2''" 2H2* H 0 0 N N N -7.026 4.285  21.632 -2.174 0.764  -0.021 "H2''" TCP 28 
TCP "H1'"  H1*  H 0 1 N N N -6.653 4.971  19.504 -1.068 -1.935 -0.133 "H1'"  TCP 29 
TCP HN3    HN3  H 0 1 N N N -4.243 1.385  17.932 0.841  2.286  2.430  HN3    TCP 30 
TCP H71    1H5M H 0 1 N N N -0.880 4.676  20.663 0.490  -1.112 5.427  H71    TCP 31 
TCP H72    2H5M H 0 1 N N N -0.829 2.942  21.017 -0.899 -2.006 4.766  H72    TCP 32 
TCP H73    3H5M H 0 1 N N N -0.271 3.546  19.448 0.758  -2.522 4.374  H73    TCP 33 
TCP H6     H6   H 0 1 N N N -3.198 5.106  20.767 -0.656 -2.242 2.063  H6     TCP 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TCP CP    "O5'"  SING N N 1  
TCP CP    HP1    SING N N 2  
TCP CP    HP2    SING N N 3  
TCP CP    HP3    SING N N 4  
TCP "O5'" "C5'"  SING N N 5  
TCP "C5'" "C4'"  SING N N 6  
TCP "C5'" "H5'"  SING N N 7  
TCP "C5'" "H5''" SING N N 8  
TCP "C4'" "O4'"  SING N N 9  
TCP "C4'" "C3'"  SING N N 10 
TCP "C4'" "H4'"  SING N N 11 
TCP "O4'" "C1'"  SING N N 12 
TCP "C3'" "O3'"  SING N N 13 
TCP "C3'" "C2'"  SING N N 14 
TCP "C3'" "H3'"  SING N N 15 
TCP "O3'" "HO3'" SING N N 16 
TCP "C2'" "C1'"  SING N N 17 
TCP "C2'" "H2'"  SING N N 18 
TCP "C2'" "H2''" SING N N 19 
TCP "C1'" N1     SING N N 20 
TCP "C1'" "H1'"  SING N N 21 
TCP N1    C2     SING N N 22 
TCP N1    C6     SING N N 23 
TCP C2    O2     DOUB N N 24 
TCP C2    N3     SING N N 25 
TCP N3    C4     SING N N 26 
TCP N3    HN3    SING N N 27 
TCP C4    O4     DOUB N N 28 
TCP C4    C5     SING N N 29 
TCP C5    C5M    SING N N 30 
TCP C5    C6     DOUB N N 31 
TCP C5M   H71    SING N N 32 
TCP C5M   H72    SING N N 33 
TCP C5M   H73    SING N N 34 
TCP C6    H6     SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TCP SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2)COC"                                                                                         
TCP SMILES_CANONICAL CACTVS               3.341 "COC[C@H]1O[C@H](C[C@@H]1O)N2C=C(C)C(=O)NC2=O"                                                                              
TCP SMILES           CACTVS               3.341 "COC[CH]1O[CH](C[CH]1O)N2C=C(C)C(=O)NC2=O"                                                                                  
TCP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COC)O"                                                                            
TCP SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COC)O"                                                                                         
TCP InChI            InChI                1.03  "InChI=1S/C11H16N2O5/c1-6-4-13(11(16)12-10(6)15)9-3-7(14)8(18-9)5-17-2/h4,7-9,14H,3,5H2,1-2H3,(H,12,15,16)/t7-,8+,9+/m0/s1" 
TCP InChIKey         InChI                1.03  KTCKNHCDUKONFQ-DJLDLDEBSA-N                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TCP "SYSTEMATIC NAME" ACDLabs              10.04 "5'-O-methylthymidine"                                                                
TCP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,4S,5R)-4-hydroxy-5-(methoxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TCP "Create component"  1999-07-08 RCSB 
TCP "Modify descriptor" 2011-06-04 RCSB 
# 
