data_TGP
# 
_chem_comp.id                                    TGP 
_chem_comp.name                                  
;5'-THIO-2'-DEOXY-GUANOSINE PHOSPHONIC ACID
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N5 O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-12-05 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        363.287 
_chem_comp.one_letter_code                       G 
_chem_comp.three_letter_code                     TGP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TGP "S5'"  S5*  S 0 1 N N N 24.555 1.169  34.295 2.414  -1.188 -3.807 "S5'"  TGP 1  
TGP N9     N9   N 0 1 Y N N 22.296 -1.610 31.995 1.818  1.923  -0.049 N9     TGP 2  
TGP C4     C4   C 0 1 Y N N 21.520 -2.740 31.903 1.882  2.959  0.840  C4     TGP 3  
TGP N3     N3   N 0 1 N N N 20.171 -2.772 31.826 2.225  2.866  2.144  N3     TGP 4  
TGP C2     C2   C 0 1 N N N 19.715 -4.004 31.751 2.203  4.026  2.765  C2     TGP 5  
TGP N2     N2   N 0 1 N N N 18.409 -4.218 31.650 2.519  4.145  4.093  N2     TGP 6  
TGP N1     N1   N 0 1 N N N 20.514 -5.116 31.762 1.853  5.233  2.115  N1     TGP 7  
TGP C6     C6   C 0 1 N N N 21.906 -5.101 31.828 1.494  5.351  0.765  C6     TGP 8  
TGP O6     O6   O 0 1 N N N 22.535 -6.160 31.802 1.191  6.394  0.200  O6     TGP 9  
TGP C5     C5   C 0 1 Y N N 22.408 -3.795 31.907 1.528  4.070  0.114  C5     TGP 10 
TGP N7     N7   N 0 1 Y N N 23.719 -3.339 31.997 1.247  3.767  -1.185 N7     TGP 11 
TGP C8     C8   C 0 1 Y N N 23.605 -2.039 32.043 1.431  2.463  -1.253 C8     TGP 12 
TGP "C2'"  C2*  C 0 1 N N N 21.597 0.293  33.450 0.878  -0.312 0.578  "C2'"  TGP 13 
TGP "C5'"  C5*  C 0 1 N N N 24.354 1.986  32.713 1.348  -1.500 -2.377 "C5'"  TGP 14 
TGP "C4'"  C4*  C 0 1 N N S 22.935 1.823  32.215 2.156  -1.432 -1.088 "C4'"  TGP 15 
TGP "O4'"  O4*  O 0 1 N N N 22.821 0.587  31.475 2.678  -0.093 -0.958 "O4'"  TGP 16 
TGP "C1'"  C1*  C 0 1 N N R 21.816 -0.233 32.040 2.101  0.516  0.211  "C1'"  TGP 17 
TGP "C3'"  C3*  C 0 1 N N S 21.849 1.779  33.286 1.309  -1.697 0.152  "C3'"  TGP 18 
TGP "O3'"  O3*  O 0 1 N N N 20.673 2.419  32.778 2.127  -2.250 1.180  "O3'"  TGP 19 
TGP OP3    O3P  O 0 1 N Y N ?      ?      ?      1.978  -0.920 -6.807 OP3    TGP 20 
TGP P      P    P 0 1 N N N ?      ?      ?      1.149  -1.320 -5.471 P      TGP 21 
TGP OP1    O1P  O 0 1 N N N ?      ?      ?      0.511  -2.680 -5.568 OP1    TGP 22 
TGP OP2    O2P  O 0 1 N N N ?      ?      ?      0.058  -0.121 -5.397 OP2    TGP 23 
TGP H21    1H2  H 0 1 N N N 18.211 -5.197 31.602 1.954  4.733  4.661  H21    TGP 24 
TGP H22    2H2  H 0 1 N N N 17.716 -3.497 31.625 3.302  3.639  4.438  H22    TGP 25 
TGP H1     H1   H 0 1 N N N 20.064 -6.008 31.719 1.862  6.083  2.672  H1     TGP 26 
TGP H8     H8   H 0 1 N N N 24.449 -1.369 32.112 1.302  1.855  -2.139 H8     TGP 27 
TGP "H2'"  1H2* H 0 1 N N N 20.579 0.087  33.811 0.008  0.008  -0.009 "H2'"  TGP 28 
TGP "H2''" 2H2* H 0 0 N N N 22.249 -0.180 34.199 0.635  -0.225 1.641  "H2''" TGP 29 
TGP "H5'"  1H5* H 0 1 N N N 24.576 3.057  32.828 0.551  -0.755 -2.357 "H5'"  TGP 30 
TGP "H5''" 2H5* H 0 0 N N N 25.043 1.533  31.985 0.894  -2.488 -2.480 "H5''" TGP 31 
TGP "H4'"  H4*  H 0 1 N N N 22.763 2.726  31.611 3.008  -2.117 -1.157 "H4'"  TGP 32 
TGP "H1'"  H1*  H 0 1 N N N 20.854 -0.213 31.506 2.853  0.503  1.007  "H1'"  TGP 33 
TGP "H3'"  H3*  H 0 1 N N N 22.122 2.279  34.227 0.475  -2.383 -0.018 "H3'"  TGP 34 
TGP "HO3'" H3T  H 0 0 N Y N 20.057 2.561  33.488 2.928  -1.706 1.218  "HO3'" TGP 35 
TGP HOP3   3HOP H 0 0 N N N ?      ?      ?      1.551  -1.044 -7.682 HOP3   TGP 36 
TGP HOP2   2HOP H 0 0 N N N ?      ?      ?      -0.679 -0.114 -6.044 HOP2   TGP 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TGP "S5'" "C5'"  SING N N 1  
TGP "S5'" P      SING N N 2  
TGP N9    C4     SING Y N 3  
TGP N9    C8     SING Y N 4  
TGP N9    "C1'"  SING N N 5  
TGP C4    N3     SING N N 6  
TGP C4    C5     DOUB Y N 7  
TGP N3    C2     DOUB N N 8  
TGP C2    N2     SING N N 9  
TGP C2    N1     SING N N 10 
TGP N2    H21    SING N N 11 
TGP N2    H22    SING N N 12 
TGP N1    C6     SING N N 13 
TGP N1    H1     SING N N 14 
TGP C6    O6     DOUB N N 15 
TGP C6    C5     SING N N 16 
TGP C5    N7     SING Y N 17 
TGP N7    C8     DOUB Y N 18 
TGP C8    H8     SING N N 19 
TGP "C2'" "C1'"  SING N N 20 
TGP "C2'" "C3'"  SING N N 21 
TGP "C2'" "H2'"  SING N N 22 
TGP "C2'" "H2''" SING N N 23 
TGP "C5'" "C4'"  SING N N 24 
TGP "C5'" "H5'"  SING N N 25 
TGP "C5'" "H5''" SING N N 26 
TGP "C4'" "O4'"  SING N N 27 
TGP "C4'" "C3'"  SING N N 28 
TGP "C4'" "H4'"  SING N N 29 
TGP "O4'" "C1'"  SING N N 30 
TGP "C1'" "H1'"  SING N N 31 
TGP "C3'" "O3'"  SING N N 32 
TGP "C3'" "H3'"  SING N N 33 
TGP "O3'" "HO3'" SING N N 34 
TGP OP3   P      SING N N 35 
TGP OP3   HOP3   SING N N 36 
TGP P     OP1    DOUB N N 37 
TGP P     OP2    SING N N 38 
TGP OP2   HOP2   SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TGP SMILES           ACDLabs              10.04 "O=P(O)(O)SCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"                                                                                                               
TGP SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CS[P](O)(O)=O)O3"                                                                                            
TGP SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CS[P](O)(O)=O)O3"                                                                                                
TGP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CSP(=O)(O)O)O)N=C(NC2=O)N"                                                                                              
TGP SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)CSP(=O)(O)O)O)N=C(NC2=O)N"                                                                                                           
TGP InChI            InChI                1.03  "InChI=1S/C10H14N5O6PS/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(21-6)2-23-22(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1" 
TGP InChIKey         InChI                1.03  AHOKECUHLPOZOT-KVQBGUIXSA-N                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TGP "SYSTEMATIC NAME" ACDLabs              10.04 "2'-deoxy-5'-S-phosphono-5'-thioguanosine"                                                        
TGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methylsulfanylphosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TGP "Create component"  2001-12-05 RCSB 
TGP "Modify descriptor" 2011-06-04 RCSB 
# 
