data_THP
# 
_chem_comp.id                                    THP 
_chem_comp.name                                  "THYMIDINE-3',5'-DIPHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H16 N2 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         PTP 
_chem_comp.formula_weight                        402.188 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     THP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1STG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
THP P2     P2   P 0 1 N N N 6.290 13.958 20.661 2.694  0.181  -3.289 P2     THP 1  
THP O4P    O4P  O 0 1 N N N 5.063 13.885 19.838 2.796  1.567  -2.780 O4P    THP 2  
THP O5P    O5P  O 0 1 N N N 7.490 14.673 20.175 4.162  -0.358 -3.670 O5P    THP 3  
THP O6P    O6P  O 0 1 N N N 6.701 12.473 21.063 1.757  0.158  -4.598 O6P    THP 4  
THP P1     P1   P 0 1 N N N 5.064 11.601 26.444 -3.072 0.194  -1.973 P1     THP 5  
THP O1P    O1P  O 0 1 N N N 4.651 11.241 27.804 -2.106 1.046  -2.701 O1P    THP 6  
THP O2P    O2P  O 0 1 N N N 6.411 11.514 25.849 -4.201 -0.330 -2.994 O2P    THP 7  
THP O3P    O3P  O 0 1 N N N 4.119 10.747 25.471 -3.766 1.050  -0.799 O3P    THP 8  
THP "O5'"  O5*  O 0 1 N N N 5.894 14.579 22.057 2.053  -0.761 -2.153 "O5'"  THP 9  
THP "C5'"  C5*  C 0 1 N N N 4.863 14.017 22.822 0.758  -0.233 -1.859 "C5'"  THP 10 
THP "C4'"  C4*  C 0 1 N N R 5.276 14.110 24.267 0.091  -1.088 -0.780 "C4'"  THP 11 
THP "O4'"  O4*  O 0 1 N N N 5.591 15.470 24.609 0.807  -0.985 0.471  "O4'"  THP 12 
THP "C3'"  C3*  C 0 1 N N S 4.121 13.716 25.146 -1.317 -0.537 -0.441 "C3'"  THP 13 
THP "O3'"  O3*  O 0 1 N N N 4.610 13.145 26.358 -2.300 -1.065 -1.333 "O3'"  THP 14 
THP "C2'"  C2*  C 0 1 N N N 3.403 15.001 25.434 -1.534 -1.067 0.997  "C2'"  THP 15 
THP "C1'"  C1*  C 0 1 N N R 4.563 15.983 25.466 -0.111 -1.363 1.509  "C1'"  THP 16 
THP N1     N1   N 0 1 N N N 4.016 17.276 25.022 0.154  -0.582 2.719  N1     THP 17 
THP C2     C2   C 0 1 N N N 3.631 18.155 26.018 0.095  0.761  2.671  C2     THP 18 
THP O2     O2   O 0 1 N N N 3.818 17.953 27.207 -0.178 1.311  1.623  O2     THP 19 
THP N3     N3   N 0 1 N N N 3.022 19.309 25.624 0.335  1.503  3.768  N3     THP 20 
THP C4     C4   C 0 1 N N N 2.766 19.675 24.328 0.635  0.907  4.940  C4     THP 21 
THP O4     O4   O 0 1 N N N 2.158 20.720 24.135 0.852  1.579  5.933  O4     THP 22 
THP C5     C5   C 0 1 N N N 3.205 18.734 23.312 0.705  -0.504 5.003  C5     THP 23 
THP C5M    C5M  C 0 1 N N N 3.037 19.091 21.820 1.043  -1.195 6.299  C5M    THP 24 
THP C6     C6   C 0 1 N N N 3.806 17.577 23.684 0.460  -1.225 3.888  C6     THP 25 
THP HOP5   5HOP H 0 0 N N N 8.278 14.719 20.703 4.509  0.232  -4.352 HOP5   THP 26 
THP HOP6   6HOP H 0 0 N N N 7.489 12.519 21.591 1.717  -0.760 -4.897 HOP6   THP 27 
THP HOP2   2HOP H 0 0 N N N 6.678 11.747 24.967 -4.638 0.453  -3.354 HOP2   THP 28 
THP HOP3   3HOP H 0 0 N N N 4.386 10.980 24.589 -4.386 0.459  -0.351 HOP3   THP 29 
THP "H5'1" 1H5* H 0 0 N N N 3.869 14.480 22.621 0.148  -0.245 -2.762 "H5'1" THP 30 
THP "H5'2" 2H5* H 0 0 N N N 4.603 12.978 22.508 0.857  0.791  -1.501 "H5'2" THP 31 
THP "H4'"  H4*  H 0 1 N N N 6.157 13.443 24.414 0.029  -2.128 -1.100 "H4'"  THP 32 
THP "H3'"  H3*  H 0 1 N N N 3.456 12.960 24.665 -1.323 0.552  -0.458 "H3'"  THP 33 
THP "H2'1" 1H2* H 0 0 N N N 2.578 15.257 24.728 -2.131 -1.979 0.981  "H2'1" THP 34 
THP "H2'2" 2H2* H 0 0 N N N 2.756 14.994 26.342 -2.012 -0.308 1.615  "H2'2" THP 35 
THP "H1'"  H1*  H 0 1 N N N 5.019 16.120 26.473 -0.009 -2.427 1.725  "H1'"  THP 36 
THP H3     H3   H 0 1 N N N 2.733 19.952 26.360 0.288  2.471  3.716  H3     THP 37 
THP H51    1H5  H 0 1 N N N 3.373 18.368 21.040 1.206  -0.448 7.077  H51    THP 38 
THP H52    2H5  H 0 1 N N N 1.966 19.342 21.633 0.219  -1.847 6.589  H52    THP 39 
THP H53    3H5  H 0 1 N N N 3.530 20.073 21.631 1.948  -1.788 6.170  H53    THP 40 
THP H6     H6   H 0 1 N N N 4.125 16.876 22.893 0.505  -2.303 3.918  H6     THP 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
THP P2    O4P    DOUB N N 1  
THP P2    O5P    SING N N 2  
THP P2    O6P    SING N N 3  
THP P2    "O5'"  SING N N 4  
THP O5P   HOP5   SING N N 5  
THP O6P   HOP6   SING N N 6  
THP P1    O1P    DOUB N N 7  
THP P1    O2P    SING N N 8  
THP P1    O3P    SING N N 9  
THP P1    "O3'"  SING N N 10 
THP O2P   HOP2   SING N N 11 
THP O3P   HOP3   SING N N 12 
THP "O5'" "C5'"  SING N N 13 
THP "C5'" "C4'"  SING N N 14 
THP "C5'" "H5'1" SING N N 15 
THP "C5'" "H5'2" SING N N 16 
THP "C4'" "O4'"  SING N N 17 
THP "C4'" "C3'"  SING N N 18 
THP "C4'" "H4'"  SING N N 19 
THP "O4'" "C1'"  SING N N 20 
THP "C3'" "O3'"  SING N N 21 
THP "C3'" "C2'"  SING N N 22 
THP "C3'" "H3'"  SING N N 23 
THP "C2'" "C1'"  SING N N 24 
THP "C2'" "H2'1" SING N N 25 
THP "C2'" "H2'2" SING N N 26 
THP "C1'" N1     SING N N 27 
THP "C1'" "H1'"  SING N N 28 
THP N1    C2     SING N N 29 
THP N1    C6     SING N N 30 
THP C2    O2     DOUB N N 31 
THP C2    N3     SING N N 32 
THP N3    C4     SING N N 33 
THP N3    H3     SING N N 34 
THP C4    O4     DOUB N N 35 
THP C4    C5     SING N N 36 
THP C5    C5M    SING N N 37 
THP C5    C6     DOUB N N 38 
THP C5M   H51    SING N N 39 
THP C5M   H52    SING N N 40 
THP C5M   H53    SING N N 41 
THP C6    H6     SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
THP SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(OP(=O)(O)O)C2)COP(=O)(O)O"                                                                                                                     
THP SMILES_CANONICAL CACTVS               3.341 "CC1=CN([C@H]2C[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                    
THP SMILES           CACTVS               3.341 "CC1=CN([CH]2C[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                        
THP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)OP(=O)(O)O"                                                                                                        
THP SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)OP(=O)(O)O"                                                                                                                     
THP InChI            InChI                1.03  "InChI=1S/C10H16N2O11P2/c1-5-3-12(10(14)11-9(5)13)8-2-6(23-25(18,19)20)7(22-8)4-21-24(15,16)17/h3,6-8H,2,4H2,1H3,(H,11,13,14)(H2,15,16,17)(H2,18,19,20)/t6-,7+,8+/m0/s1" 
THP InChIKey         InChI                1.03  CSNCBOPUCJOHLS-XLPZGREQSA-N                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
THP "SYSTEMATIC NAME" ACDLabs              10.04 
;thymidine 3',5'-bis(dihydrogen phosphate)
;
THP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3-phosphonooxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
THP "Create component"  1999-07-08 EBI  
THP "Modify descriptor" 2011-06-04 RCSB 
# 
