data_UBP
#

_chem_comp.id                                   UBP
_chem_comp.name                                 "3-[3-(2-carboxyethyl)-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl]-L-alanine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H13 N3 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(S)-1-(2-amino-2-carboxyethyl)-3-(2-carboxyethyl)pyrimidine-2,4-dione"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-04-09
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       271.227
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UBP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3H03
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UBP  N1    N1    N  0  1  N  N  N  27.983  26.510  -22.015  -1.074  -0.819   0.473  N1    UBP   1  
UBP  C2    C2    C  0  1  N  N  N  26.904  26.203  -21.125   0.001  -0.095   0.113  C2    UBP   2  
UBP  O2    O2    O  0  1  N  N  N  27.176  25.978  -19.908  -0.064   1.119   0.116  O2    UBP   3  
UBP  N3    N3    N  0  1  N  N  N  25.555  26.153  -21.570   1.150  -0.697  -0.250  N3    UBP   4  
UBP  C4    C4    C  0  1  N  N  N  25.366  26.436  -22.971   1.239  -2.042  -0.258  C4    UBP   5  
UBP  O4    O4    O  0  1  N  N  N  24.220  26.422  -23.460   2.278  -2.587  -0.585  O4    UBP   6  
UBP  C5    C5    C  0  1  N  N  N  26.388  26.734  -23.839   0.114  -2.815   0.119  C5    UBP   7  
UBP  C6    C6    C  0  1  N  N  N  27.663  26.765  -23.351  -1.023  -2.186   0.484  C6    UBP   8  
UBP  C7    C7    C  0  1  N  N  N  29.382  26.558  -21.546  -2.311  -0.136   0.863  C7    UBP   9  
UBP  C8    C8    C  0  1  N  N  S  29.637  27.847  -20.739  -3.186   0.080  -0.373  C8    UBP  10  
UBP  N8    N8    N  0  1  N  N  N  29.254  29.030  -21.640  -2.417   0.800  -1.398  N8    UBP  11  
UBP  C9    C9    C  0  1  N  N  N  31.109  27.878  -20.326  -4.399   0.890   0.005  C9    UBP  12  
UBP  O91   O91   O  0  1  N  N  N  31.722  28.829  -20.796  -4.431   2.075  -0.226  O91   UBP  13  
UBP  O92   O92   O  0  1  N  N  N  31.585  27.044  -19.616  -5.445   0.294   0.600  O92   UBP  14  
UBP  C1    C1    C  0  1  N  N  N  24.576  25.813  -20.483   2.307   0.114  -0.638  C1    UBP  15  
UBP  C3    C3    C  0  1  N  N  N  23.077  25.688  -20.687   3.154   0.418   0.599  C3    UBP  16  
UBP  C10   C10   C  0  1  N  N  N  22.399  25.361  -19.395   4.345   1.251   0.200  C10   UBP  17  
UBP  O3    O3    O  0  1  N  N  N  22.280  26.247  -18.571   5.233   1.640   1.128  O3    UBP  18  
UBP  O1    O1    O  0  1  N  N  N  22.022  24.217  -19.215   4.499   1.570  -0.955  O1    UBP  19  
UBP  H5    H5    H  0  1  N  N  N  26.188  26.938  -24.880   0.167  -3.894   0.118  H5    UBP  20  
UBP  H6    H6    H  0  1  N  N  N  28.466  26.999  -24.034  -1.891  -2.760   0.774  H6    UBP  21  
UBP  H7    H7    H  0  1  N  N  N  29.577  25.686  -20.904  -2.850  -0.747   1.587  H7    UBP  22  
UBP  H7A   H7A   H  0  1  N  N  N  30.051  26.546  -22.419  -2.068   0.828   1.309  H7A   UBP  23  
UBP  H8    H8    H  0  1  N  N  N  29.037  27.897  -19.819  -3.502  -0.885  -0.768  H8    UBP  24  
UBP  HN8   HN8   H  0  1  N  N  N  29.171  29.858  -21.086  -2.112   1.699  -1.055  HN8   UBP  25  
UBP  HN8A  HN8A  H  0  0  N  N  N  29.962  29.163  -22.334  -1.633   0.250  -1.715  HN8A  UBP  26  
UBP  HO92  HO92  H  0  0  N  N  N  32.505  27.234  -19.476  -6.200   0.854   0.824  HO92  UBP  27  
UBP  H1    H1    H  0  1  N  N  N  24.893  24.824  -20.119   2.907  -0.434  -1.364  H1    UBP  28  
UBP  H1A   H1A   H  0  1  N  N  N  24.633  26.713  -19.854   1.963   1.048  -1.081  H1A   UBP  29  
UBP  H3    H3    H  0  1  N  N  N  22.684  26.642  -21.069   2.554   0.966   1.326  H3    UBP  30  
UBP  H3A   H3A   H  0  1  N  N  N  22.881  24.880  -21.407   3.498  -0.517   1.043  H3A   UBP  31  
UBP  HO3   HO3   H  0  1  N  N  N  21.858  25.902  -17.793   5.980   2.174   0.824  HO3   UBP  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UBP  C6   N1    SING  N  N   1  
UBP  N1   C7    SING  N  N   2  
UBP  N1   C2    SING  N  N   3  
UBP  N3   C2    SING  N  N   4  
UBP  C2   O2    DOUB  N  N   5  
UBP  C4   N3    SING  N  N   6  
UBP  N3   C1    SING  N  N   7  
UBP  C5   C4    SING  N  N   8  
UBP  O4   C4    DOUB  N  N   9  
UBP  C5   C6    DOUB  N  N  10  
UBP  C5   H5    SING  N  N  11  
UBP  C6   H6    SING  N  N  12  
UBP  C7   C8    SING  N  N  13  
UBP  C7   H7    SING  N  N  14  
UBP  C7   H7A   SING  N  N  15  
UBP  N8   C8    SING  N  N  16  
UBP  C8   C9    SING  N  N  17  
UBP  C8   H8    SING  N  N  18  
UBP  N8   HN8   SING  N  N  19  
UBP  N8   HN8A  SING  N  N  20  
UBP  O91  C9    DOUB  N  N  21  
UBP  C9   O92   SING  N  N  22  
UBP  O92  HO92  SING  N  N  23  
UBP  C3   C1    SING  N  N  24  
UBP  C1   H1    SING  N  N  25  
UBP  C1   H1A   SING  N  N  26  
UBP  C3   C10   SING  N  N  27  
UBP  C3   H3    SING  N  N  28  
UBP  C3   H3A   SING  N  N  29  
UBP  C10  O1    DOUB  N  N  30  
UBP  C10  O3    SING  N  N  31  
UBP  O3   HO3   SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UBP  SMILES            ACDLabs               10.04  "O=C(O)C(N)CN1C=CC(=O)N(C1=O)CCC(=O)O"  
UBP  SMILES_CANONICAL  CACTVS                3.341  "N[C@@H](CN1C=CC(=O)N(CCC(O)=O)C1=O)C(O)=O"  
UBP  SMILES            CACTVS                3.341  "N[CH](CN1C=CC(=O)N(CCC(O)=O)C1=O)C(O)=O"  
UBP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N(C1=O)CCC(=O)O)C[C@@H](C(=O)O)N"  
UBP  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N(C1=O)CCC(=O)O)CC(C(=O)O)N"  
UBP  InChI             InChI                 1.03   "InChI=1S/C10H13N3O6/c11-6(9(17)18)5-12-3-1-7(14)13(10(12)19)4-2-8(15)16/h1,3,6H,2,4-5,11H2,(H,15,16)(H,17,18)/t6-/m0/s1"  
UBP  InChIKey          InChI                 1.03   CNWDQZBURPNJRN-LURJTMIESA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UBP  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-[3-(2-carboxyethyl)-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl]-L-alanine"  
UBP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-amino-3-[3-(2-carboxyethyl)-2,4-dioxo-pyrimidin-1-yl]propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UBP  "Create component"   2009-04-09  RCSB  
UBP  "Modify descriptor"  2011-06-04  RCSB  
UBP  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UBP
_pdbx_chem_comp_synonyms.name        "(S)-1-(2-amino-2-carboxyethyl)-3-(2-carboxyethyl)pyrimidine-2,4-dione"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
