data_UTP
#

_chem_comp.id                                   UTP
_chem_comp.name                                 "URIDINE 5'-TRIPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H15 N2 O15 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-03-27
_chem_comp.pdbx_modified_date                   2011-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       484.141
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UTP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1GX6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UTP  PA      PA    P  0  1  N  N  R  18.309  26.365  27.441  -1.462   0.132  -0.265  PA      UTP   1  
UTP  O1A     O1A   O  0  1  N  N  N  19.058  25.478  26.514  -2.059   1.390  -0.766  O1A     UTP   2  
UTP  O2A     O2A   O  0  1  N  N  N  18.460  26.206  28.913  -1.132  -0.838  -1.508  O2A     UTP   3  
UTP  O3A     O3A   O  0  1  N  N  N  16.725  26.328  27.094  -2.501  -0.599   0.724  O3A     UTP   4  
UTP  "O5'"   O5*   O  0  1  N  N  N  18.566  27.884  27.076  -0.104   0.463   0.533  "O5'"   UTP   5  
UTP  PB      PB    P  0  1  N  N  S  15.502  25.636  27.821  -3.943  -0.542   0.009  PB      UTP   6  
UTP  O1B     O1B   O  0  1  N  N  N  15.755  25.133  29.161  -4.037  -1.701  -1.104  O1B     UTP   7  
UTP  O2B     O2B   O  0  1  N  N  N  14.962  24.729  26.843  -4.121   0.778  -0.637  O2B     UTP   8  
UTP  O3B     O3B   O  0  1  N  N  N  14.560  26.910  27.985  -5.097  -0.760   1.110  O3B     UTP   9  
UTP  PG      PG    P  0  1  N  N  N  13.146  27.070  28.678  -6.482  -0.302   0.430  PG      UTP  10  
UTP  O1G     O1G   O  0  1  N  N  N  12.961  28.560  28.983  -7.030  -1.481  -0.520  O1G     UTP  11  
UTP  O2G     O2G   O  0  1  N  N  N  12.192  26.542  27.637  -6.256   0.917  -0.378  O2G     UTP  12  
UTP  O3G     O3G   O  0  1  N  N  N  13.123  26.239  29.952  -7.567   0.009   1.578  O3G     UTP  13  
UTP  "C5'"   C5*   C  0  1  N  N  N  17.953  28.908  27.837   0.726   1.211  -0.358  "C5'"   UTP  14  
UTP  "C4'"   C4*   C  0  1  N  N  R  17.799  30.142  26.999   2.041   1.560   0.343  "C4'"   UTP  15  
UTP  "O4'"   O4*   O  0  1  N  N  N  16.765  29.918  26.002   2.808   0.361   0.601  "O4'"   UTP  16  
UTP  "C1'"   C1*   C  0  1  N  N  R  16.025  31.105  25.856   4.168   0.809   0.786  "C1'"   UTP  17  
UTP  "C2'"   C2*   C  0  1  N  N  R  15.960  31.654  27.282   4.372   1.904  -0.284  "C2'"   UTP  18  
UTP  "O2'"   O2*   O  0  1  N  N  N  15.624  33.021  27.293   5.181   2.965   0.229  "O2'"   UTP  19  
UTP  "C3'"   C3*   C  0  1  N  N  S  17.378  31.376  27.787   2.942   2.410  -0.580  "C3'"   UTP  20  
UTP  "O3'"   O3*   O  0  1  N  N  N  18.272  32.452  27.523   2.824   3.796  -0.257  "O3'"   UTP  21  
UTP  N1      N1    N  0  1  Y  N  N  14.707  30.780  25.282   5.105  -0.296   0.569  N1      UTP  22  
UTP  C6      C6    C  0  1  Y  N  N  13.921  29.782  25.809   6.070  -0.560   1.502  C6      UTP  23  
UTP  C2      C2    C  0  1  Y  N  N  14.268  31.537  24.204   5.006  -1.045  -0.545  C2      UTP  24  
UTP  O2      O2    O  0  1  N  N  N  14.958  32.393  23.675   4.141  -0.793  -1.361  O2      UTP  25  
UTP  N3      N3    N  0  1  Y  N  N  12.997  31.244  23.764   5.856  -2.064  -0.772  N3      UTP  26  
UTP  C4      C4    C  0  1  Y  N  N  12.146  30.276  24.267   6.821  -2.356   0.124  C4      UTP  27  
UTP  O4      O4    O  0  1  N  N  N  10.996  30.178  23.817   7.588  -3.280  -0.078  O4      UTP  28  
UTP  C5      C5    C  0  1  Y  N  N  12.692  29.509  25.350   6.934  -1.579   1.302  C5      UTP  29  
UTP  H2A     H2A   H  0  1  N  N  N  19.383  26.172  29.135  -0.746  -1.644  -1.139  H2A     UTP  30  
UTP  H1B     H1B   H  0  1  N  N  N  16.690  25.023  29.287  -3.916  -2.542  -0.643  H1B     UTP  31  
UTP  H1G     H1G   H  0  1  N  N  N  12.034  28.758  29.046  -7.164  -2.255   0.044  H1G     UTP  32  
UTP  H3G     H3G   H  0  1  N  N  N  14.014  26.066  30.234  -8.380   0.279   1.130  H3G     UTP  33  
UTP  "H5'1"  1H5*  H  0  0  N  N  N  18.582  29.138  28.710   0.215   2.128  -0.648  "H5'1"  UTP  34  
UTP  "H5'2"  2H5*  H  0  0  N  N  N  16.962  28.569  28.172   0.935   0.615  -1.246  "H5'2"  UTP  35  
UTP  "H4'"   H4*   H  0  1  N  N  N  18.791  30.329  26.562   1.845   2.092   1.274  "H4'"   UTP  36  
UTP  "H1'"   H1*   H  0  1  N  N  N  16.459  31.850  25.173   4.299   1.225   1.785  "H1'"   UTP  37  
UTP  "H2'"   H2*   H  0  1  N  N  N  15.184  31.197  27.914   4.821   1.482  -1.183  "H2'"   UTP  38  
UTP  HA      HA    H  0  1  N  N  N  14.679  33.115  27.295   5.221   3.643  -0.459  HA      UTP  39  
UTP  "H3'"   H3*   H  0  1  N  N  N  17.401  31.241  28.878   2.686   2.239  -1.626  "H3'"   UTP  40  
UTP  HB      HB    H  0  1  N  N  N  17.782  33.264  27.464   3.428   4.273  -0.842  HB      UTP  41  
UTP  H6      H6    H  0  1  N  N  N  14.311  29.194  26.627   6.141   0.044   2.395  H6      UTP  42  
UTP  H3      H3    H  0  1  N  N  N  12.652  31.789  23.000   5.773  -2.591  -1.581  H3      UTP  43  
UTP  H5      H5    H  0  1  N  N  N  12.113  28.713  25.795   7.700  -1.798   2.031  H5      UTP  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UTP  PA     O1A     DOUB  N  N   1  
UTP  PA     O2A     SING  N  N   2  
UTP  PA     O3A     SING  N  N   3  
UTP  PA     "O5'"   SING  N  N   4  
UTP  O2A    H2A     SING  N  N   5  
UTP  O3A    PB      SING  N  N   6  
UTP  "O5'"  "C5'"   SING  N  N   7  
UTP  PB     O1B     SING  N  N   8  
UTP  PB     O2B     DOUB  N  N   9  
UTP  PB     O3B     SING  N  N  10  
UTP  O1B    H1B     SING  N  N  11  
UTP  O3B    PG      SING  N  N  12  
UTP  PG     O1G     SING  N  N  13  
UTP  PG     O2G     DOUB  N  N  14  
UTP  PG     O3G     SING  N  N  15  
UTP  O1G    H1G     SING  N  N  16  
UTP  O3G    H3G     SING  N  N  17  
UTP  "C5'"  "C4'"   SING  N  N  18  
UTP  "C5'"  "H5'1"  SING  N  N  19  
UTP  "C5'"  "H5'2"  SING  N  N  20  
UTP  "C4'"  "O4'"   SING  N  N  21  
UTP  "C4'"  "C3'"   SING  N  N  22  
UTP  "C4'"  "H4'"   SING  N  N  23  
UTP  "O4'"  "C1'"   SING  N  N  24  
UTP  "C1'"  "C2'"   SING  N  N  25  
UTP  "C1'"  N1      SING  N  N  26  
UTP  "C1'"  "H1'"   SING  N  N  27  
UTP  "C2'"  "O2'"   SING  N  N  28  
UTP  "C2'"  "C3'"   SING  N  N  29  
UTP  "C2'"  "H2'"   SING  N  N  30  
UTP  "O2'"  HA      SING  N  N  31  
UTP  "C3'"  "O3'"   SING  N  N  32  
UTP  "C3'"  "H3'"   SING  N  N  33  
UTP  "O3'"  HB      SING  N  N  34  
UTP  N1     C6      SING  Y  N  35  
UTP  N1     C2      SING  Y  N  36  
UTP  C6     C5      DOUB  Y  N  37  
UTP  C6     H6      SING  N  N  38  
UTP  C2     O2      DOUB  N  N  39  
UTP  C2     N3      SING  Y  N  40  
UTP  N3     C4      SING  Y  N  41  
UTP  N3     H3      SING  N  N  42  
UTP  C4     O4      DOUB  N  N  43  
UTP  C4     C5      SING  Y  N  44  
UTP  C5     H5      SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UTP  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O"  
UTP  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"  
UTP  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"  
UTP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)O"  
UTP  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"  
UTP  InChI             InChI                 1.03   "InChI=1S/C9H15N2O15P3/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1"  
UTP  InChIKey          InChI                 1.03   PGAVKCOVUIYSFO-XVFCMESISA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UTP  "SYSTEMATIC NAME"  ACDLabs               10.04  "uridine 5'-(tetrahydrogen triphosphate)"  
UTP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UTP  "Create component"   2002-03-27  RCSB  
UTP  "Modify descriptor"  2011-06-04  RCSB  
##
