data_VDP
# 
_chem_comp.id                                    VDP 
_chem_comp.name                                  
"(3R,5S)-5-[(2R)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[(2Z)-2-[(3S,5R)-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(4-phenylbutyl)pyrrolidin-2-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H53 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-11 
_chem_comp.pdbx_modified_date                    2016-12-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        575.821 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4XWQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VDP O3  O1  O 0 1 N N N -9.324  18.089 -29.127 4.950   3.998  0.669  O3  VDP 1  
VDP C25 C1  C 0 1 N N N -9.517  19.235 -28.753 3.923   3.611  0.153  C25 VDP 2  
VDP C26 C2  C 0 1 N N R -8.955  19.763 -27.467 2.599   4.340  0.204  C26 VDP 3  
VDP O4  O2  O 0 1 N N N -9.360  18.879 -26.440 2.335   4.805  1.529  O4  VDP 4  
VDP C24 C3  C 0 1 N N N -7.438  19.904 -27.521 2.593   5.508  -0.785 C24 VDP 5  
VDP C27 C4  C 0 1 N N N -9.600  21.119 -27.304 1.561   3.273  -0.213 C27 VDP 6  
VDP C23 C5  C 0 1 N N S -10.236 21.468 -28.657 2.426   2.301  -1.046 C23 VDP 7  
VDP N28 N1  N 0 1 N N N -10.196 20.186 -29.380 3.798   2.474  -0.553 N28 VDP 8  
VDP C28 C6  C 0 1 N N N -10.780 20.160 -30.725 4.889   1.526  -0.794 C28 VDP 9  
VDP C29 C7  C 0 1 N N N -9.559  19.931 -31.626 4.933   0.499  0.339  C29 VDP 10 
VDP C30 C8  C 0 1 N N N -9.119  21.228 -32.296 6.140   -0.421 0.146  C30 VDP 11 
VDP C31 C9  C 0 1 N N N -7.619  21.523 -32.262 6.253   -1.370 1.341  C31 VDP 12 
VDP C32 C10 C 0 1 Y N N -7.446  23.033 -32.089 7.442   -2.277 1.151  C32 VDP 13 
VDP C33 C11 C 0 1 Y N N -7.550  23.633 -30.821 8.683   -1.899 1.628  C33 VDP 14 
VDP C34 C12 C 0 1 Y N N -7.397  25.020 -30.669 9.773   -2.731 1.454  C34 VDP 15 
VDP C35 C13 C 0 1 Y N N -7.140  25.839 -31.777 9.622   -3.941 0.802  C35 VDP 16 
VDP C36 C14 C 0 1 Y N N -7.051  25.252 -33.043 8.381   -4.319 0.325  C36 VDP 17 
VDP C37 C15 C 0 1 Y N N -7.205  23.858 -33.192 7.290   -3.489 0.504  C37 VDP 18 
VDP C22 C16 C 0 1 N N N -11.672 21.943 -28.439 1.960   0.860  -0.832 C22 VDP 19 
VDP C20 C17 C 0 1 N N R -11.613 23.382 -27.940 0.553   0.688  -1.410 C20 VDP 20 
VDP C21 C18 C 0 1 N N N -10.541 24.211 -28.638 0.600   0.872  -2.928 C21 VDP 21 
VDP C16 C19 C 0 1 N N R -12.944 23.976 -27.474 0.035   -0.713 -1.081 C16 VDP 22 
VDP C11 C20 C 0 1 N N R -12.973 25.361 -26.817 -1.364  -0.905 -1.646 C11 VDP 23 
VDP C18 C21 C 0 1 N N N -11.898 25.414 -25.726 -2.112  0.429  -1.607 C18 VDP 24 
VDP C9  C22 C 0 1 N N S -14.377 25.406 -26.188 -2.022  -1.890 -0.639 C9  VDP 25 
VDP C15 C23 C 0 1 N N N -14.533 24.010 -25.565 -1.610  -1.270 0.698  C15 VDP 26 
VDP C17 C24 C 0 1 N N N -13.555 23.106 -26.359 -0.124  -0.883 0.453  C17 VDP 27 
VDP C12 C25 C 0 1 N N N -12.816 26.557 -27.743 -1.503  -1.502 -3.027 C12 VDP 28 
VDP C13 C26 C 0 1 N N N -13.042 27.888 -26.982 -2.997  -1.481 -3.393 C13 VDP 29 
VDP C14 C27 C 0 1 N N N -14.288 27.958 -26.081 -3.837  -2.272 -2.392 C14 VDP 30 
VDP C8  C28 C 0 1 N N N -14.437 26.649 -25.326 -3.486  -1.877 -0.964 C8  VDP 31 
VDP C7  C29 C 0 1 N N N -14.542 26.639 -23.977 -4.414  -1.544 -0.067 C7  VDP 32 
VDP C6  C30 C 0 1 N N N -14.526 27.887 -23.218 -5.830  -1.550 -0.441 C6  VDP 33 
VDP C5  C31 C 0 1 N N N -14.334 28.045 -21.879 -6.769  -1.213 0.467  C5  VDP 34 
VDP C4  C32 C 0 1 N N N -14.365 29.481 -21.381 -8.245  -1.206 0.119  C4  VDP 35 
VDP C3  C33 C 0 1 N N R -14.735 29.635 -19.904 -8.858  0.098  0.641  C3  VDP 36 
VDP O2  O3  O 0 1 N N N -16.144 29.482 -19.767 -10.261 0.105  0.370  O2  VDP 37 
VDP C2  C34 C 0 1 N N N -14.110 28.565 -19.028 -8.630  0.209  2.149  C2  VDP 38 
VDP C1  C35 C 0 1 N N S -14.669 27.235 -19.499 -7.134  0.361  2.439  C1  VDP 39 
VDP O1  O4  O 0 1 N N N -14.242 26.253 -18.565 -6.647  1.564  1.840  O1  VDP 40 
VDP C10 C36 C 0 1 N N N -14.126 26.989 -20.872 -6.410  -0.838 1.850  C10 VDP 41 
VDP C19 C37 C 0 1 N N N -13.432 25.890 -21.084 -5.496  -1.517 2.543  C19 VDP 42 
VDP H1  H1  H 0 1 N N N -9.595  18.040 -26.818 2.988   5.433  1.864  H1  VDP 43 
VDP H2  H2  H 0 1 N N N -7.071  20.293 -26.560 2.776   5.133  -1.792 H2  VDP 44 
VDP H3  H3  H 0 1 N N N -6.985  18.921 -27.715 1.623   6.006  -0.753 H3  VDP 45 
VDP H4  H4  H 0 1 N N N -7.163  20.600 -28.327 3.374   6.218  -0.514 H4  VDP 46 
VDP H5  H5  H 0 1 N N N -8.842  21.870 -27.036 1.145   2.772  0.661  H5  VDP 47 
VDP H6  H6  H 0 1 N N N -10.371 21.081 -26.521 0.772   3.713  -0.821 H6  VDP 48 
VDP H7  H7  H 0 1 N N N -9.646  22.240 -29.173 2.373   2.561  -2.104 H7  VDP 49 
VDP H8  H8  H 0 1 N N N -11.272 21.115 -30.961 4.722   1.014  -1.742 H8  VDP 50 
VDP H9  H9  H 0 1 N N N -11.505 19.339 -30.825 5.835   2.065  -0.834 H9  VDP 51 
VDP H10 H10 H 0 1 N N N -9.818  19.196 -32.402 5.020   1.016  1.294  H10 VDP 52 
VDP H11 H11 H 0 1 N N N -8.730  19.543 -31.016 4.018   -0.094 0.328  H11 VDP 53 
VDP H12 H12 H 0 1 N N N -9.637  22.059 -31.795 6.011   -1.002 -0.768 H12 VDP 54 
VDP H13 H13 H 0 1 N N N -9.430  21.185 -33.350 7.046   0.179  0.071  H13 VDP 55 
VDP H14 H14 H 0 1 N N N -7.152  20.993 -31.419 6.381   -0.790 2.255  H14 VDP 56 
VDP H15 H15 H 0 1 N N N -7.152  21.198 -33.203 5.347   -1.970 1.416  H15 VDP 57 
VDP H16 H16 H 0 1 N N N -7.750  23.020 -29.955 8.801   -0.954 2.136  H16 VDP 58 
VDP H17 H17 H 0 1 N N N -7.478  25.461 -29.687 10.743  -2.435 1.826  H17 VDP 59 
VDP H18 H18 H 0 1 N N N -7.013  26.905 -31.655 10.474  -4.590 0.665  H18 VDP 60 
VDP H19 H19 H 0 1 N N N -6.864  25.868 -33.910 8.264   -5.264 -0.184 H19 VDP 61 
VDP H20 H20 H 0 1 N N N -7.135  23.419 -34.177 6.320   -3.785 0.132  H20 VDP 62 
VDP H21 H21 H 0 1 N N N -12.230 21.897 -29.386 2.645   0.178  -1.336 H21 VDP 63 
VDP H22 H22 H 0 1 N N N -12.168 21.307 -27.691 1.944   0.638  0.235  H22 VDP 64 
VDP H23 H23 H 0 1 N N N -11.126 23.225 -26.966 -0.112  1.433  -0.974 H23 VDP 65 
VDP H24 H24 H 0 1 N N N -10.549 25.235 -28.236 1.016   1.851  -3.163 H24 VDP 66 
VDP H25 H25 H 0 1 N N N -9.555  23.756 -28.464 1.225   0.095  -3.369 H25 VDP 67 
VDP H26 H26 H 0 1 N N N -10.746 24.240 -29.718 -0.410  0.799  -3.333 H26 VDP 68 
VDP H27 H27 H 0 1 N N N -13.639 23.982 -28.327 0.711   -1.470 -1.479 H27 VDP 69 
VDP H28 H28 H 0 1 N N N -12.012 24.549 -25.056 -1.667  1.116  -2.328 H28 VDP 70 
VDP H29 H29 H 0 1 N N N -10.902 25.389 -26.192 -3.159  0.266  -1.860 H29 VDP 71 
VDP H30 H30 H 0 1 N N N -12.009 26.343 -25.147 -2.042  0.856  -0.607 H30 VDP 72 
VDP H31 H31 H 0 1 N N N -15.114 25.506 -26.998 -1.605  -2.892 -0.745 H31 VDP 73 
VDP H32 H32 H 0 1 N N N -15.567 23.651 -25.674 -2.209  -0.386 0.915  H32 VDP 74 
VDP H33 H33 H 0 1 N N N -14.263 24.030 -24.499 -1.694  -1.999 1.504  H33 VDP 75 
VDP H34 H34 H 0 1 N N N -14.098 22.256 -26.798 0.533   -1.674 0.812  H34 VDP 76 
VDP H35 H35 H 0 1 N N N -12.762 22.732 -25.695 0.107   0.055  0.959  H35 VDP 77 
VDP H36 H36 H 0 1 N N N -13.552 26.480 -28.557 -0.938  -0.909 -3.746 H36 VDP 78 
VDP H37 H37 H 0 1 N N N -11.800 26.553 -28.165 -1.138  -2.529 -3.025 H37 VDP 79 
VDP H38 H38 H 0 1 N N N -12.160 28.065 -26.348 -3.344  -0.447 -3.409 H38 VDP 80 
VDP H39 H39 H 0 1 N N N -13.124 28.691 -27.729 -3.126  -1.913 -4.385 H39 VDP 81 
VDP H40 H40 H 0 1 N N N -14.177 28.785 -25.364 -4.893  -2.069 -2.571 H40 VDP 82 
VDP H41 H41 H 0 1 N N N -15.181 28.128 -26.701 -3.648  -3.336 -2.527 H41 VDP 83 
VDP H42 H42 H 0 1 N N N -14.639 25.698 -23.456 -4.122  -1.270 0.936  H42 VDP 84 
VDP H43 H43 H 0 1 N N N -14.685 28.792 -23.786 -6.123  -1.824 -1.444 H43 VDP 85 
VDP H44 H44 H 0 1 N N N -13.367 29.918 -21.532 -8.367  -1.262 -0.963 H44 VDP 86 
VDP H45 H45 H 0 1 N N N -15.103 30.036 -21.979 -8.736  -2.057 0.589  H45 VDP 87 
VDP H46 H46 H 0 1 N N N -14.415 30.627 -19.552 -8.388  0.945  0.141  H46 VDP 88 
VDP H47 H47 H 0 1 N N N -16.386 29.576 -18.853 -10.480 0.042  -0.569 H47 VDP 89 
VDP H48 H48 H 0 1 N N N -13.016 28.577 -19.138 -9.164  1.079  2.533  H48 VDP 90 
VDP H49 H49 H 0 1 N N N -14.375 28.736 -17.974 -9.004  -0.690 2.639  H49 VDP 91 
VDP H50 H50 H 0 1 N N N -15.767 27.290 -19.537 -6.970  0.395  3.516  H50 VDP 92 
VDP H51 H51 H 0 1 N N N -14.609 26.447 -17.710 -5.704  1.722  1.985  H51 VDP 93 
VDP H52 H52 H 0 1 N N N -13.266 25.192 -20.277 -4.998  -2.364 2.094  H52 VDP 94 
VDP H53 H53 H 0 1 N N N -13.028 25.687 -22.065 -5.253  -1.221 3.553  H53 VDP 95 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VDP C37 C36 DOUB Y N 1  
VDP C37 C32 SING Y N 2  
VDP C36 C35 SING Y N 3  
VDP C30 C31 SING N N 4  
VDP C30 C29 SING N N 5  
VDP C31 C32 SING N N 6  
VDP C32 C33 DOUB Y N 7  
VDP C35 C34 DOUB Y N 8  
VDP C29 C28 SING N N 9  
VDP C33 C34 SING Y N 10 
VDP C28 N28 SING N N 11 
VDP N28 C25 SING N N 12 
VDP N28 C23 SING N N 13 
VDP O3  C25 DOUB N N 14 
VDP C25 C26 SING N N 15 
VDP C23 C22 SING N N 16 
VDP C23 C27 SING N N 17 
VDP C21 C20 SING N N 18 
VDP C22 C20 SING N N 19 
VDP C20 C16 SING N N 20 
VDP C12 C13 SING N N 21 
VDP C12 C11 SING N N 22 
VDP C24 C26 SING N N 23 
VDP C16 C11 SING N N 24 
VDP C16 C17 SING N N 25 
VDP C26 C27 SING N N 26 
VDP C26 O4  SING N N 27 
VDP C13 C14 SING N N 28 
VDP C11 C9  SING N N 29 
VDP C11 C18 SING N N 30 
VDP C17 C15 SING N N 31 
VDP C9  C15 SING N N 32 
VDP C9  C8  SING N N 33 
VDP C14 C8  SING N N 34 
VDP C8  C7  DOUB N E 35 
VDP C7  C6  SING N N 36 
VDP C6  C5  DOUB N Z 37 
VDP C5  C4  SING N N 38 
VDP C5  C10 SING N N 39 
VDP C4  C3  SING N N 40 
VDP C19 C10 DOUB N N 41 
VDP C10 C1  SING N N 42 
VDP C3  O2  SING N N 43 
VDP C3  C2  SING N N 44 
VDP C1  C2  SING N N 45 
VDP C1  O1  SING N N 46 
VDP O4  H1  SING N N 47 
VDP C24 H2  SING N N 48 
VDP C24 H3  SING N N 49 
VDP C24 H4  SING N N 50 
VDP C27 H5  SING N N 51 
VDP C27 H6  SING N N 52 
VDP C23 H7  SING N N 53 
VDP C28 H8  SING N N 54 
VDP C28 H9  SING N N 55 
VDP C29 H10 SING N N 56 
VDP C29 H11 SING N N 57 
VDP C30 H12 SING N N 58 
VDP C30 H13 SING N N 59 
VDP C31 H14 SING N N 60 
VDP C31 H15 SING N N 61 
VDP C33 H16 SING N N 62 
VDP C34 H17 SING N N 63 
VDP C35 H18 SING N N 64 
VDP C36 H19 SING N N 65 
VDP C37 H20 SING N N 66 
VDP C22 H21 SING N N 67 
VDP C22 H22 SING N N 68 
VDP C20 H23 SING N N 69 
VDP C21 H24 SING N N 70 
VDP C21 H25 SING N N 71 
VDP C21 H26 SING N N 72 
VDP C16 H27 SING N N 73 
VDP C18 H28 SING N N 74 
VDP C18 H29 SING N N 75 
VDP C18 H30 SING N N 76 
VDP C9  H31 SING N N 77 
VDP C15 H32 SING N N 78 
VDP C15 H33 SING N N 79 
VDP C17 H34 SING N N 80 
VDP C17 H35 SING N N 81 
VDP C12 H36 SING N N 82 
VDP C12 H37 SING N N 83 
VDP C13 H38 SING N N 84 
VDP C13 H39 SING N N 85 
VDP C14 H40 SING N N 86 
VDP C14 H41 SING N N 87 
VDP C7  H42 SING N N 88 
VDP C6  H43 SING N N 89 
VDP C4  H44 SING N N 90 
VDP C4  H45 SING N N 91 
VDP C3  H46 SING N N 92 
VDP O2  H47 SING N N 93 
VDP C2  H48 SING N N 94 
VDP C2  H49 SING N N 95 
VDP C1  H50 SING N N 96 
VDP O1  H51 SING N N 97 
VDP C19 H52 SING N N 98 
VDP C19 H53 SING N N 99 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VDP SMILES           ACDLabs              12.01 "O=C2N(CCCCc1ccccc1)C(CC2(O)C)CC(C)C5CCC4C(=C\C=C3/C(=C)C(O)CC(O)C3)\CCCC45C" 
VDP InChI            InChI                1.03  
;InChI=1S/C37H53NO4/c1-25(21-30-24-37(4,42)35(41)38(30)20-9-8-13-27-11-6-5-7-12-27)32-17-18-33-28(14-10-19-36(32,33)3)15-16-29-22-31(39)23-34(40)26(29)2/h5-7,11-12,15-16,25,30-34,39-40,42H,2,8-10,13-14,17-24H2,1,3-4H3/b28-15+,29-16-/t25-,30+,31-,32-,33+,34+,36-,37-/m1/s1
;
VDP InChIKey         InChI                1.03  IVUJLUOFPHOBPG-HEMHZJQPSA-N 
VDP SMILES_CANONICAL CACTVS               3.385 "C[C@H](C[C@H]1C[C@@](C)(O)C(=O)N1CCCCc2ccccc2)[C@H]3CC[C@H]4\C(CCC[C@]34C)=C\C=C5\C[C@@H](O)C[C@H](O)C5=C" 
VDP SMILES           CACTVS               3.385 "C[CH](C[CH]1C[C](C)(O)C(=O)N1CCCCc2ccccc2)[CH]3CC[CH]4C(CCC[C]34C)=CC=C5C[CH](O)C[CH](O)C5=C" 
VDP SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@H](C[C@H]1C[C@@](C(=O)N1CCCCc2ccccc2)(C)O)[C@H]3CC[C@@H]\4[C@@]3(CCC/C4=C\C=C/5\C[C@H](C[C@@H](C5=C)O)O)C" 
VDP SMILES           "OpenEye OEToolkits" 1.9.2 "CC(CC1CC(C(=O)N1CCCCc2ccccc2)(C)O)C3CCC4C3(CCCC4=CC=C5CC(CC(C5=C)O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VDP "SYSTEMATIC NAME" ACDLabs              12.01 
"(3R,5S)-5-{(2R)-2-[(1R,3aS,4E,7aR)-4-{(2Z)-2-[(3S,5R)-3,5-dihydroxy-2-methylidenecyclohexylidene]ethylidene}-7a-methyloctahydro-1H-inden-1-yl]propyl}-3-hydroxy-3-methyl-1-(4-phenylbutyl)pyrrolidin-2-one (non-preferred name)" 
VDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"(3R,5S)-5-[(2R)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[(2Z)-2-[(3S,5R)-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(4-phenylbutyl)pyrrolidin-2-one"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VDP "Create component" 2015-02-11 PDBJ 
VDP "Initial release"  2016-12-07 RCSB 
# 
