data_VMP
# 
_chem_comp.id                                    VMP 
_chem_comp.name                                  "N-[[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]carbamoyl]naphthalene-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H20 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-11-21 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        376.361 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VMP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZCT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VMP C10  C10  C 0 1 Y N N 36.485 26.444 32.266 -4.342 -0.583 -0.787 C10  VMP 1  
VMP C11  C11  C 0 1 Y N N 37.563 26.934 33.009 -5.647 -0.332 -0.337 C11  VMP 2  
VMP C24  C24  C 0 1 Y N N 38.618 27.578 32.357 -6.761 -0.886 -0.993 C24  VMP 3  
VMP C26  C26  C 0 1 Y N N 39.694 28.070 33.100 -8.014 -0.623 -0.530 C26  VMP 4  
VMP C27  C27  C 0 1 Y N N 39.713 27.920 34.490 -8.211 0.189  0.585  C27  VMP 5  
VMP C25  C25  C 0 1 Y N N 38.663 27.280 35.148 -7.156 0.742  1.245  C25  VMP 6  
VMP C12  C12  C 0 1 Y N N 37.584 26.787 34.405 -5.848 0.494  0.798  C12  VMP 7  
VMP C13  C13  C 0 1 Y N N 36.525 26.151 35.062 -4.737 1.052  1.459  C13  VMP 8  
VMP C14  C14  C 0 1 Y N N 35.453 25.663 34.316 -3.482 0.799  1.009  C14  VMP 9  
VMP C9   C9   C 0 1 Y N N 35.431 25.801 32.926 -3.270 -0.019 -0.115 C9   VMP 10 
VMP C8   C8   C 0 1 N N N 34.231 25.253 32.138 -1.893 -0.279 -0.583 C8   VMP 11 
VMP O8   O8   O 0 1 N N N 33.096 25.381 32.599 -1.705 -0.984 -1.555 O8   VMP 12 
VMP N2   N2   N 0 1 N N N 34.531 24.664 30.966 -0.846 0.266  0.067  N2   VMP 13 
VMP C7   C7   C 0 1 N N N 33.626 24.112 30.134 0.410  0.029  -0.360 C7   VMP 14 
VMP O7   O7   O 0 1 N N N 32.413 24.120 30.365 0.598  -0.676 -1.332 O7   VMP 15 
VMP N1   N1   N 0 1 N N N 34.115 23.563 29.015 1.457  0.575  0.290  N1   VMP 16 
VMP C1   C1   C 0 1 N N R 33.211 22.927 28.020 2.822  0.317  -0.175 C1   VMP 17 
VMP O5   O5   O 0 1 N N N 33.166 21.491 28.273 3.376  -0.778 0.557  O5   VMP 18 
VMP C5   C5   C 0 1 N N R 32.112 20.869 27.504 4.703  -1.132 0.163  C5   VMP 19 
VMP C6   C6   C 0 1 N N N 32.061 19.397 27.944 5.180  -2.328 0.990  C6   VMP 20 
VMP O6   O6   O 0 1 N N N 33.145 18.675 27.349 4.377  -3.469 0.682  O6   VMP 21 
VMP C4   C4   C 0 1 N N S 32.356 21.034 25.982 5.638  0.058  0.400  C4   VMP 22 
VMP O4   O4   O 0 1 N N N 31.214 20.555 25.264 6.954  -0.273 -0.046 O4   VMP 23 
VMP C3   C3   C 0 1 N N S 32.639 22.504 25.602 5.121  1.268  -0.383 C3   VMP 24 
VMP O3   O3   O 0 1 N N N 33.125 22.570 24.261 5.945  2.402  -0.110 O3   VMP 25 
VMP C2   C2   C 0 1 N N R 33.670 23.136 26.567 3.681  1.565  0.049  C2   VMP 26 
VMP O2   O2   O 0 1 N N N 33.841 24.532 26.296 3.163  2.647  -0.728 O2   VMP 27 
VMP H10  H10  H 0 1 N N N 36.465 26.560 31.192 -4.175 -1.213 -1.648 H10  VMP 28 
VMP H24  H24  H 0 1 N N N 38.602 27.695 31.283 -6.624 -1.516 -1.859 H24  VMP 29 
VMP H26  H26  H 0 1 N N N 40.512 28.567 32.600 -8.868 -1.050 -1.035 H26  VMP 30 
VMP H27  H27  H 0 1 N N N 40.548 28.303 35.059 -9.215 0.382  0.932  H27  VMP 31 
VMP H25  H25  H 0 1 N N N 38.682 27.166 36.222 -7.325 1.370  2.108  H25  VMP 32 
VMP H13  H13  H 0 1 N N N 36.538 26.039 36.136 -4.884 1.681  2.324  H13  VMP 33 
VMP H14  H14  H 0 1 N N N 34.631 25.173 34.818 -2.635 1.231  1.522  H14  VMP 34 
VMP H2   H2   H 0 1 N N N 35.493 24.634 30.693 -0.997 0.829  0.842  H2   VMP 35 
VMP H1   H1   H 0 1 N N N 35.100 23.581 28.846 1.306  1.138  1.065  H1   VMP 36 
VMP HA   HA   H 0 1 N N N 32.202 23.350 28.130 2.805  0.073  -1.237 HA   VMP 37 
VMP HB   HB   H 0 1 N N N 34.629 22.614 26.431 3.666  1.833  1.105  HB   VMP 38 
VMP H5   H5   H 0 1 N N N 31.148 21.339 27.751 4.711  -1.395 -0.894 H5   VMP 39 
VMP H61C H61C H 0 0 N N N 32.142 19.340 29.040 6.222  -2.541 0.753  H61C VMP 40 
VMP H62C H62C H 0 0 N N N 31.107 18.953 27.624 5.088  -2.095 2.052  H62C VMP 41 
VMP H4   H4   H 0 1 N N N 33.239 20.436 25.712 5.663  0.295  1.464  H4   VMP 42 
VMP H6   H6   H 0 1 N N N 33.109 17.766 27.624 4.624  -4.266 1.171  H6   VMP 43 
VMP HC   HC   H 0 1 N N N 31.361 20.655 24.331 7.600  0.436  0.074  HC   VMP 44 
VMP H3   H3   H 0 1 N N N 31.699 23.069 25.686 5.144  1.048  -1.451 H3   VMP 45 
VMP HD   HD   H 0 1 N N N 33.298 23.475 24.031 5.675  3.206  -0.574 HD   VMP 46 
VMP H2A  H2A  H 0 1 N N N 34.124 24.648 25.397 2.252  2.886  -0.510 H2A  VMP 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VMP C10 C11  SING Y N 1  
VMP C10 C9   DOUB Y N 2  
VMP C11 C24  SING Y N 3  
VMP C11 C12  DOUB Y N 4  
VMP C24 C26  DOUB Y N 5  
VMP C26 C27  SING Y N 6  
VMP C27 C25  DOUB Y N 7  
VMP C25 C12  SING Y N 8  
VMP C12 C13  SING Y N 9  
VMP C13 C14  DOUB Y N 10 
VMP C14 C9   SING Y N 11 
VMP C9  C8   SING N N 12 
VMP C8  O8   DOUB N N 13 
VMP C8  N2   SING N N 14 
VMP N2  C7   SING N N 15 
VMP C7  O7   DOUB N N 16 
VMP C7  N1   SING N N 17 
VMP N1  C1   SING N N 18 
VMP C1  O5   SING N N 19 
VMP C1  C2   SING N N 20 
VMP O5  C5   SING N N 21 
VMP C5  C6   SING N N 22 
VMP C5  C4   SING N N 23 
VMP C6  O6   SING N N 24 
VMP C4  O4   SING N N 25 
VMP C4  C3   SING N N 26 
VMP C3  O3   SING N N 27 
VMP C3  C2   SING N N 28 
VMP C2  O2   SING N N 29 
VMP C10 H10  SING N N 30 
VMP C24 H24  SING N N 31 
VMP C26 H26  SING N N 32 
VMP C27 H27  SING N N 33 
VMP C25 H25  SING N N 34 
VMP C13 H13  SING N N 35 
VMP C14 H14  SING N N 36 
VMP N2  H2   SING N N 37 
VMP N1  H1   SING N N 38 
VMP C1  HA   SING N N 39 
VMP C2  HB   SING N N 40 
VMP C5  H5   SING N N 41 
VMP C6  H61C SING N N 42 
VMP C6  H62C SING N N 43 
VMP C4  H4   SING N N 44 
VMP O6  H6   SING N N 45 
VMP O4  HC   SING N N 46 
VMP C3  H3   SING N N 47 
VMP O3  HD   SING N N 48 
VMP O2  H2A  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VMP SMILES           ACDLabs              12.01 "O=C(NC1OC(C(O)C(O)C1O)CO)NC(=O)c3cc2ccccc2cc3"                                                                                                                             
VMP InChI            InChI                1.03  "InChI=1S/C18H20N2O7/c21-8-12-13(22)14(23)15(24)17(27-12)20-18(26)19-16(25)11-6-5-9-3-1-2-4-10(9)7-11/h1-7,12-15,17,21-24H,8H2,(H2,19,20,25,26)/t12-,13-,14+,15-,17-/m1/s1" 
VMP InChIKey         InChI                1.03  CWTXJPICSREUOK-OWVAZHOYSA-N                                                                                                                                                 
VMP SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](NC(=O)NC(=O)c2ccc3ccccc3c2)[C@H](O)[C@@H](O)[C@@H]1O"                                                                                                      
VMP SMILES           CACTVS               3.385 "OC[CH]1O[CH](NC(=O)NC(=O)c2ccc3ccccc3c2)[CH](O)[CH](O)[CH]1O"                                                                                                              
VMP SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2cc(ccc2c1)C(=O)NC(=O)N[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O"                                                                                                   
VMP SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc2cc(ccc2c1)C(=O)NC(=O)NC3C(C(C(C(O3)CO)O)O)O"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VMP "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(naphthalen-2-ylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine"                                        
VMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]carbamoyl]naphthalene-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VMP "Create component"  2012-11-21 EBI  
VMP "Initial release"   2013-12-11 RCSB 
VMP "Modify descriptor" 2014-09-05 RCSB 
# 
