data_VRP
#

_chem_comp.id                                   VRP
_chem_comp.name                                 Myriocin
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H39 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2S,3R,4R,6E)-2-amino-3,4-dihydroxy-2-(hydroxymethyl)-14-oxoicos-6-enoic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-11
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       401.537
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VRP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7K0Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VRP  C10  C1   C  0  1  N  N  N  192.394  182.180  192.120   3.846   1.002  -0.109  C10  VRP   1  
VRP  C11  C2   C  0  1  N  N  N  191.276  181.701  193.077   2.438   0.741  -0.647  C11  VRP   2  
VRP  C12  C3   C  0  1  N  N  N  191.554  181.953  194.574   1.475   1.790  -0.087  C12  VRP   3  
VRP  C13  C4   C  0  1  N  N  N  192.656  182.991  194.864   0.067   1.528  -0.624  C13  VRP   4  
VRP  C14  C5   C  0  1  N  N  N  193.206  182.953  196.299  -0.896   2.577  -0.064  C14  VRP   5  
VRP  C01  C6   C  0  1  N  N  N  194.660  181.932  182.209  13.517  -1.083   0.651  C01  VRP   6  
VRP  C02  C7   C  0  1  N  N  N  193.684  181.515  183.295  12.228  -1.560  -0.021  C02  VRP   7  
VRP  C03  C8   C  0  1  N  N  N  194.157  181.940  184.679  11.071  -0.647   0.390  C03  VRP   8  
VRP  C04  C9   C  0  1  N  N  N  193.121  181.685  185.774   9.782  -1.124  -0.282  C04  VRP   9  
VRP  C05  C10  C  0  1  N  N  N  193.686  181.966  187.174   8.625  -0.212   0.128  C05  VRP  10  
VRP  C06  C11  C  0  1  N  N  N  192.683  182.591  188.152   7.336  -0.689  -0.544  C06  VRP  11  
VRP  C07  C12  C  0  1  N  N  N  193.032  182.410  189.622   6.196   0.211  -0.140  C07  VRP  12  
VRP  C09  C13  C  0  1  N  N  N  191.934  182.436  190.672   4.809  -0.047  -0.669  C09  VRP  13  
VRP  C15  C14  C  0  1  N  N  N  194.222  184.009  196.625  -2.283   2.320  -0.594  C15  VRP  14  
VRP  C16  C15  C  0  1  N  N  N  195.087  183.914  197.640  -3.284   2.170   0.238  C16  VRP  15  
VRP  C17  C16  C  0  1  N  N  N  196.107  184.946  197.999  -4.671   1.913  -0.292  C17  VRP  16  
VRP  C18  C17  C  0  1  N  N  R  196.989  184.536  199.208  -5.229   0.635   0.338  C18  VRP  17  
VRP  C19  C18  C  0  1  N  N  R  196.216  184.656  200.579  -6.584   0.305  -0.292  C19  VRP  18  
VRP  C20  C19  C  0  1  N  N  S  196.963  184.086  201.831  -7.106  -1.013   0.283  C20  VRP  19  
VRP  C21  C20  C  0  1  N  N  N  196.178  182.891  202.403  -8.413  -1.393  -0.416  C21  VRP  20  
VRP  C23  C21  C  0  1  N  N  N  198.403  183.543  201.464  -6.084  -2.098   0.062  C23  VRP  21  
VRP  N26  N1   N  0  1  N  N  N  197.015  185.154  202.838  -7.349  -0.857   1.724  N26  VRP  22  
VRP  O08  O1   O  0  1  N  N  N  194.191  182.241  189.951   6.394   1.137   0.609  O08  VRP  23  
VRP  O22  O2   O  0  1  N  N  N  194.862  183.324  202.520  -8.158  -1.638  -1.801  O22  VRP  24  
VRP  O24  O3   O  0  1  N  N  N  198.455  182.395  200.982  -5.290  -2.004  -0.844  O24  VRP  25  
VRP  O25  O4   O  0  1  N  N  N  199.366  184.302  201.684  -6.056  -3.169   0.870  O25  VRP  26  
VRP  O27  O5   O  0  1  N  N  N  195.977  186.014  200.713  -7.511   1.352  -0.001  O27  VRP  27  
VRP  O28  O6   O  0  1  N  N  N  198.057  185.421  199.145  -5.391   0.828   1.744  O28  VRP  28  
VRP  H1   H1   H  0  1  N  N  N  193.180  181.411  192.099   4.173   1.996  -0.415  H1   VRP  29  
VRP  H2   H2   H  0  1  N  N  N  192.809  183.118  192.519   3.837   0.942   0.979  H2   VRP  30  
VRP  H3   H3   H  0  1  N  N  N  190.347  182.226  192.808   2.448   0.801  -1.735  H3   VRP  31  
VRP  H4   H4   H  0  1  N  N  N  191.141  180.619  192.931   2.111  -0.253  -0.341  H4   VRP  32  
VRP  H5   H5   H  0  1  N  N  N  190.622  182.305  195.040   1.466   1.729   1.002  H5   VRP  33  
VRP  H6   H6   H  0  1  N  N  N  191.855  180.999  195.031   1.802   2.783  -0.393  H6   VRP  34  
VRP  H7   H7   H  0  1  N  N  N  193.491  182.809  194.171   0.077   1.589  -1.713  H7   VRP  35  
VRP  H8   H8   H  0  1  N  N  N  192.241  183.993  194.682  -0.260   0.535  -0.318  H8   VRP  36  
VRP  H9   H9   H  0  1  N  N  N  192.359  183.071  196.991  -0.905   2.517   1.024  H9   VRP  37  
VRP  H10  H10  H  0  1  N  N  N  193.674  181.970  196.457  -0.569   3.571  -0.370  H10  VRP  38  
VRP  H11  H11  H  0  1  N  N  N  194.280  181.606  181.229  13.733  -0.061   0.340  H11  VRP  39  
VRP  H12  H12  H  0  1  N  N  N  194.769  183.027  182.214  13.396  -1.115   1.734  H12  VRP  40  
VRP  H13  H13  H  0  1  N  N  N  195.638  181.465  182.397  14.342  -1.733   0.359  H13  VRP  41  
VRP  H14  H14  H  0  1  N  N  N  192.708  181.981  183.094  12.350  -1.528  -1.104  H14  VRP  42  
VRP  H15  H15  H  0  1  N  N  N  193.578  180.420  183.276  12.013  -2.582   0.291  H15  VRP  43  
VRP  H16  H16  H  0  1  N  N  N  195.070  181.378  184.924  10.950  -0.679   1.472  H16  VRP  44  
VRP  H17  H17  H  0  1  N  N  N  194.384  183.016  184.656  11.286   0.375   0.078  H17  VRP  45  
VRP  H18  H18  H  0  1  N  N  N  192.254  182.340  185.603   9.904  -1.092  -1.365  H18  VRP  46  
VRP  H19  H19  H  0  1  N  N  N  192.802  180.633  185.724   9.567  -2.146   0.029  H19  VRP  47  
VRP  H20  H20  H  0  1  N  N  N  194.035  181.014  187.601   8.503  -0.243   1.211  H20  VRP  48  
VRP  H21  H21  H  0  1  N  N  N  194.538  182.654  187.069   8.840   0.811  -0.184  H21  VRP  49  
VRP  H22  H22  H  0  1  N  N  N  192.627  183.670  187.943   7.457  -0.657  -1.627  H22  VRP  50  
VRP  H23  H23  H  0  1  N  N  N  191.699  182.132  187.974   7.121  -1.711  -0.233  H23  VRP  51  
VRP  H24  H24  H  0  1  N  N  N  191.456  183.426  190.638   4.482  -1.041  -0.363  H24  VRP  52  
VRP  H25  H25  H  0  1  N  N  N  191.196  181.664  190.409   4.819   0.013  -1.758  H25  VRP  53  
VRP  H26  H26  H  0  1  N  N  N  194.256  184.893  196.006  -2.451   2.259  -1.659  H26  VRP  54  
VRP  H27  H27  H  0  1  N  N  N  195.046  183.022  198.248  -3.115   2.231   1.303  H27  VRP  55  
VRP  H28  H28  H  0  1  N  N  N  196.760  185.110  197.129  -5.318   2.753  -0.041  H28  VRP  56  
VRP  H29  H29  H  0  1  N  N  N  195.585  185.882  198.248  -4.631   1.797  -1.375  H29  VRP  57  
VRP  H30  H30  H  0  1  N  N  N  197.320  183.495  199.077  -4.536  -0.189   0.161  H30  VRP  58  
VRP  H31  H31  H  0  1  N  N  N  195.266  184.111  200.476  -6.470   0.210  -1.372  H31  VRP  59  
VRP  H32  H32  H  0  1  N  N  N  196.239  182.031  201.720  -8.823  -2.292   0.043  H32  VRP  60  
VRP  H33  H33  H  0  1  N  N  N  196.577  182.607  203.388  -9.128  -0.576  -0.318  H33  VRP  61  
VRP  H34  H34  H  0  1  N  N  N  197.488  184.821  203.654  -7.850  -1.650   2.094  H34  VRP  62  
VRP  H35  H35  H  0  1  N  N  N  197.508  185.940  202.465  -6.485  -0.709   2.223  H35  VRP  63  
VRP  H37  H37  H  0  1  N  N  N  194.327  182.622  202.871  -8.944  -1.885  -2.307  H37  VRP  64  
VRP  H38  H38  H  0  1  N  N  N  200.173  183.873  201.426  -5.383  -3.839   0.689  H38  VRP  65  
VRP  H39  H39  H  0  1  N  N  N  195.509  186.175  201.524  -7.735   1.431   0.937  H39  VRP  66  
VRP  H40  H40  H  0  1  N  N  N  198.659  185.243  199.858  -5.995   1.546   1.975  H40  VRP  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VRP  C01  C02  SING  N  N   1  
VRP  C02  C03  SING  N  N   2  
VRP  C03  C04  SING  N  N   3  
VRP  C04  C05  SING  N  N   4  
VRP  C05  C06  SING  N  N   5  
VRP  C06  C07  SING  N  N   6  
VRP  C07  O08  DOUB  N  N   7  
VRP  C07  C09  SING  N  N   8  
VRP  C09  C10  SING  N  N   9  
VRP  C10  C11  SING  N  N  10  
VRP  C11  C12  SING  N  N  11  
VRP  C12  C13  SING  N  N  12  
VRP  C13  C14  SING  N  N  13  
VRP  C14  C15  SING  N  N  14  
VRP  C15  C16  DOUB  N  E  15  
VRP  C16  C17  SING  N  N  16  
VRP  C17  C18  SING  N  N  17  
VRP  O28  C18  SING  N  N  18  
VRP  C18  C19  SING  N  N  19  
VRP  C19  O27  SING  N  N  20  
VRP  C19  C20  SING  N  N  21  
VRP  O24  C23  DOUB  N  N  22  
VRP  C23  O25  SING  N  N  23  
VRP  C23  C20  SING  N  N  24  
VRP  C20  C21  SING  N  N  25  
VRP  C20  N26  SING  N  N  26  
VRP  C21  O22  SING  N  N  27  
VRP  C10  H1   SING  N  N  28  
VRP  C10  H2   SING  N  N  29  
VRP  C11  H3   SING  N  N  30  
VRP  C11  H4   SING  N  N  31  
VRP  C12  H5   SING  N  N  32  
VRP  C12  H6   SING  N  N  33  
VRP  C13  H7   SING  N  N  34  
VRP  C13  H8   SING  N  N  35  
VRP  C14  H9   SING  N  N  36  
VRP  C14  H10  SING  N  N  37  
VRP  C01  H11  SING  N  N  38  
VRP  C01  H12  SING  N  N  39  
VRP  C01  H13  SING  N  N  40  
VRP  C02  H14  SING  N  N  41  
VRP  C02  H15  SING  N  N  42  
VRP  C03  H16  SING  N  N  43  
VRP  C03  H17  SING  N  N  44  
VRP  C04  H18  SING  N  N  45  
VRP  C04  H19  SING  N  N  46  
VRP  C05  H20  SING  N  N  47  
VRP  C05  H21  SING  N  N  48  
VRP  C06  H22  SING  N  N  49  
VRP  C06  H23  SING  N  N  50  
VRP  C09  H24  SING  N  N  51  
VRP  C09  H25  SING  N  N  52  
VRP  C15  H26  SING  N  N  53  
VRP  C16  H27  SING  N  N  54  
VRP  C17  H28  SING  N  N  55  
VRP  C17  H29  SING  N  N  56  
VRP  C18  H30  SING  N  N  57  
VRP  C19  H31  SING  N  N  58  
VRP  C21  H32  SING  N  N  59  
VRP  C21  H33  SING  N  N  60  
VRP  N26  H34  SING  N  N  61  
VRP  N26  H35  SING  N  N  62  
VRP  O22  H37  SING  N  N  63  
VRP  O25  H38  SING  N  N  64  
VRP  O27  H39  SING  N  N  65  
VRP  O28  H40  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VRP  SMILES            ACDLabs               12.01  "C(CCCC\C=C\CC(C(O)C(CO)(N)C(O)=O)O)CC(CCCCCC)=O"  
VRP  InChI             InChI                 1.03   "InChI=1S/C21H39NO6/c1-2-3-4-10-13-17(24)14-11-8-6-5-7-9-12-15-18(25)19(26)21(22,16-23)20(27)28/h9,12,18-19,23,25-26H,2-8,10-11,13-16,22H2,1H3,(H,27,28)/b12-9+/t18-,19+,21+/m1/s1"  
VRP  InChIKey          InChI                 1.03   ZZIKIHCNFWXKDY-GNTQXERDSA-N  
VRP  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCC(=O)CCCCCC\C=C\C[C@@H](O)[C@H](O)[C@@](N)(CO)C(O)=O"  
VRP  SMILES            CACTVS                3.385  "CCCCCCC(=O)CCCCCCC=CC[CH](O)[CH](O)[C](N)(CO)C(O)=O"  
VRP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCC(=O)CCCCCC/C=C/C[C@H]([C@@H]([C@@](CO)(C(=O)O)N)O)O"  
VRP  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCC(=O)CCCCCCC=CCC(C(C(CO)(C(=O)O)N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VRP  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,3R,4R,6E)-2-amino-3,4-dihydroxy-2-(hydroxymethyl)-14-oxoicos-6-enoic acid"  
VRP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(~{E},2~{S},3~{R},4~{R})-2-azanyl-2-(hydroxymethyl)-3,4-bis(oxidanyl)-14-oxidanylidene-icos-6-enoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VRP  "Create component"  2020-09-11  RCSB  
VRP  "Initial release"   2021-02-24  RCSB  
VRP  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VRP
_pdbx_chem_comp_synonyms.name        "(2S,3R,4R,6E)-2-amino-3,4-dihydroxy-2-(hydroxymethyl)-14-oxoicos-6-enoic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
