data_VZP
#

_chem_comp.id                                   VZP
_chem_comp.name                                 "N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-methyl-N'-propan-2-ylurea"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H18 N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-24
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       234.316
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VZP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RQ7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VZP  N1   N1   N  0  1  N  N  N  19.857  28.016  5.348   0.619  -0.362   0.221  N1   VZP   1  
VZP  C4   C1   C  0  1  N  N  N  19.571  28.109  3.918   0.612  -1.710   0.794  C4   VZP   2  
VZP  C5   C2   C  0  1  N  N  R  21.047  27.251  5.767  -0.640   0.370   0.055  C5   VZP   3  
VZP  C6   C3   C  0  1  N  N  N  22.329  28.066  5.843  -1.319   0.548   1.424  C6   VZP   4  
VZP  C7   C4   C  0  1  N  N  N  22.895  28.025  4.430  -2.770   1.018   1.142  C7   VZP   5  
VZP  C8   C5   C  0  1  N  N  N  21.390  25.974  5.011  -1.585  -0.428  -0.865  C8   VZP   6  
VZP  O2   O1   O  0  1  N  N  N  23.953  25.681  4.352  -3.953   0.733  -1.229  O2   VZP   7  
VZP  S    S1   S  0  1  N  N  N  22.773  26.402  3.958  -3.270  -0.051  -0.261  S    VZP   8  
VZP  O1   O2   O  0  1  N  N  N  22.374  26.326  2.579  -3.869  -1.237   0.242  O1   VZP   9  
VZP  C3   C6   C  0  1  N  N  N  19.153  28.673  6.328   1.783   0.208  -0.147  C3   VZP  10  
VZP  O    O3   O  0  1  N  N  N  19.385  28.498  7.517   1.788   1.330  -0.618  O    VZP  11  
VZP  N    N2   N  0  1  N  N  N  18.194  29.520  5.923   2.941  -0.464   0.005  N    VZP  12  
VZP  C1   C7   C  0  1  N  N  N  17.352  30.251  6.873   4.206   0.156  -0.396  C1   VZP  13  
VZP  C2   C8   C  0  1  N  N  N  17.661  31.717  6.789   4.732   1.027   0.747  C2   VZP  14  
VZP  C    C9   C  0  1  N  N  N  15.907  29.978  6.578   5.229  -0.936  -0.717  C    VZP  15  
VZP  H1   H1   H  0  1  N  N  N  18.660  28.706  3.764   0.503  -2.444  -0.005  H1   VZP  16  
VZP  H2   H2   H  0  1  N  N  N  20.416  28.591  3.406   1.550  -1.885   1.322  H2   VZP  17  
VZP  H3   H3   H  0  1  N  N  N  19.421  27.099  3.508  -0.220  -1.805   1.491  H3   VZP  18  
VZP  H4   H4   H  0  1  N  N  N  20.847  26.930  6.800  -0.441   1.347  -0.385  H4   VZP  19  
VZP  H5   H5   H  0  1  N  N  N  23.034  27.615  6.557  -1.332  -0.401   1.961  H5   VZP  20  
VZP  H6   H6   H  0  1  N  N  N  22.113  29.102  6.145  -0.789   1.300   2.009  H6   VZP  21  
VZP  H7   H7   H  0  1  N  N  N  23.945  28.352  4.424  -3.408   0.844   2.008  H7   VZP  22  
VZP  H8   H8   H  0  1  N  N  N  22.307  28.668  3.759  -2.786   2.070   0.856  H8   VZP  23  
VZP  H9   H9   H  0  1  N  N  N  20.533  25.643  4.406  -1.472  -0.101  -1.899  H9   VZP  24  
VZP  H10  H10  H  0  1  N  N  N  21.673  25.176  5.713  -1.382  -1.496  -0.783  H10  VZP  25  
VZP  H11  H11  H  0  1  N  N  N  18.050  29.656  4.943   2.936  -1.358   0.381  H11  VZP  26  
VZP  H12  H12  H  0  1  N  N  N  17.574  29.903  7.893   4.044   0.773  -1.279  H12  VZP  27  
VZP  H13  H13  H  0  1  N  N  N  17.029  32.267  7.502   4.893   0.410   1.630  H13  VZP  28  
VZP  H14  H14  H  0  1  N  N  N  18.720  31.883  7.034   5.673   1.488   0.448  H14  VZP  29  
VZP  H15  H15  H  0  1  N  N  N  17.460  32.076  5.769   4.003   1.805   0.975  H15  VZP  30  
VZP  H16  H16  H  0  1  N  N  N  15.276  30.528  7.292   4.855  -1.557  -1.531  H16  VZP  31  
VZP  H17  H17  H  0  1  N  N  N  15.673  30.306  5.554   6.171  -0.475  -1.015  H17  VZP  32  
VZP  H18  H18  H  0  1  N  N  N  15.711  28.900  6.671   5.391  -1.553   0.167  H18  VZP  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VZP  O1  S    DOUB  N  N   1  
VZP  C4  N1   SING  N  N   2  
VZP  S   O2   DOUB  N  N   3  
VZP  S   C7   SING  N  N   4  
VZP  S   C8   SING  N  N   5  
VZP  C7  C6   SING  N  N   6  
VZP  C8  C5   SING  N  N   7  
VZP  N1  C5   SING  N  N   8  
VZP  N1  C3   SING  N  N   9  
VZP  C5  C6   SING  N  N  10  
VZP  N   C3   SING  N  N  11  
VZP  N   C1   SING  N  N  12  
VZP  C3  O    DOUB  N  N  13  
VZP  C   C1   SING  N  N  14  
VZP  C2  C1   SING  N  N  15  
VZP  C4  H1   SING  N  N  16  
VZP  C4  H2   SING  N  N  17  
VZP  C4  H3   SING  N  N  18  
VZP  C5  H4   SING  N  N  19  
VZP  C6  H5   SING  N  N  20  
VZP  C6  H6   SING  N  N  21  
VZP  C7  H7   SING  N  N  22  
VZP  C7  H8   SING  N  N  23  
VZP  C8  H9   SING  N  N  24  
VZP  C8  H10  SING  N  N  25  
VZP  N   H11  SING  N  N  26  
VZP  C1  H12  SING  N  N  27  
VZP  C2  H13  SING  N  N  28  
VZP  C2  H14  SING  N  N  29  
VZP  C2  H15  SING  N  N  30  
VZP  C   H16  SING  N  N  31  
VZP  C   H17  SING  N  N  32  
VZP  C   H18  SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VZP  SMILES            ACDLabs               12.01  "N(C1CCS(C1)(=O)=O)(C(=O)NC(C)C)C"  
VZP  InChI             InChI                 1.03   "InChI=1S/C9H18N2O3S/c1-7(2)10-9(12)11(3)8-4-5-15(13,14)6-8/h7-8H,4-6H2,1-3H3,(H,10,12)/t8-/m1/s1"  
VZP  InChIKey          InChI                 1.03   RMWFRPZNASSVCZ-MRVPVSSYSA-N  
VZP  SMILES_CANONICAL  CACTVS                3.385  "CC(C)NC(=O)N(C)[C@@H]1CC[S](=O)(=O)C1"  
VZP  SMILES            CACTVS                3.385  "CC(C)NC(=O)N(C)[CH]1CC[S](=O)(=O)C1"  
VZP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)NC(=O)N(C)[C@@H]1CCS(=O)(=O)C1"  
VZP  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)NC(=O)N(C)C1CCS(=O)(=O)C1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VZP  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-methyl-N'-propan-2-ylurea"  
VZP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]-1-methyl-3-propan-2-yl-urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VZP  "Create component"  2020-09-24  RCSB  
VZP  "Initial release"   2021-01-13  RCSB  
##
