data_WMP
# 
_chem_comp.id                                    WMP 
_chem_comp.name                                  
;[(1R,5R,6R,8S)-6-(6-aminopurin-9-yl)-3'-[(R)-oxidanyl(phenyl)methyl]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-8-yl]methyl dihydrogen phosphate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H24 B N5 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2013-05-10 
_chem_comp.pdbx_modified_date                    2013-08-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        568.260 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WMP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4K47 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WMP CAI   CAI   C 0  1 Y N N 14.714 -14.413 11.989 6.552  0.009  1.308  CAI   WMP 1  
WMP CAG   CAG   C 0  1 Y N N 13.739 -14.451 12.984 6.932  -0.773 2.382  CAG   WMP 2  
WMP CAF   CAF   C 0  1 Y N N 13.151 -15.659 13.337 6.135  -0.832 3.510  CAF   WMP 3  
WMP CAH   CAH   C 0  1 Y N N 13.540 -16.824 12.698 4.958  -0.108 3.563  CAH   WMP 4  
WMP CAJ   CAJ   C 0  1 Y N N 14.511 -16.791 11.707 4.578  0.674  2.489  CAJ   WMP 5  
WMP CBA   CBA   C 0  1 Y N N 15.104 -15.581 11.346 5.378  0.738  1.363  CBA   WMP 6  
WMP CBG   CBG   C 0  1 N N R 16.172 -15.522 10.278 4.965  1.590  0.192  CBG   WMP 7  
WMP OAB   OAB   O 0  1 N N N 17.371 -15.925 10.898 6.126  2.159  -0.417 OAB   WMP 8  
WMP CBB   CBB   C 0  1 Y N N 15.871 -16.256 8.991  4.234  0.740  -0.816 CBB   WMP 9  
WMP CAN   CAN   C 0  1 Y N N 16.122 -17.625 8.820  2.851  0.759  -0.863 CAN   WMP 10 
WMP CBD   CBD   C 0  1 Y N N 15.895 -18.243 7.562  2.186  -0.020 -1.783 CBD   WMP 11 
WMP CAK   CAK   C 0  1 Y N N 15.359 -15.514 7.938  4.946  -0.053 -1.695 CAK   WMP 12 
WMP CAL   CAL   C 0  1 Y N N 15.083 -16.134 6.732  4.278  -0.837 -2.619 CAL   WMP 13 
WMP CBC   CBC   C 0  1 Y N N 15.318 -17.500 6.576  2.902  -0.826 -2.660 CBC   WMP 14 
WMP CAP   CAP   C 0  1 N N N 15.153 -18.392 5.327  1.879  -1.548 -3.505 CAP   WMP 15 
WMP OAU   OAU   O 0  1 N N N 15.312 -19.768 5.765  0.643  -0.824 -3.359 OAU   WMP 16 
WMP BA    BA    B -1 1 N N N 15.992 -19.758 7.039  0.686  -0.244 -2.123 BA    WMP 17 
WMP "O3'" "O3'" O 0  1 N N N 15.424 -20.910 7.828  0.013  0.969  -2.146 "O3'" WMP 18 
WMP "O2'" "O2'" O 0  1 N N N 17.481 -19.938 7.092  0.126  -1.103 -1.182 "O2'" WMP 19 
WMP "C2'" "C2'" C 0  1 N N R 17.658 -21.244 7.562  -1.203 -0.637 -1.101 "C2'" WMP 20 
WMP "C3'" "C3'" C 0  1 N N R 16.547 -21.306 8.558  -0.846 0.907  -1.057 "C3'" WMP 21 
WMP "C4'" "C4'" C 0  1 N N S 16.955 -22.305 9.473  -2.204 1.485  -0.830 "C4'" WMP 22 
WMP "C5'" "C5'" C 0  1 N N N 16.382 -22.297 10.727 -2.095 2.825  -0.099 "C5'" WMP 23 
WMP "O5'" "O5'" O 0  1 N N N 17.242 -22.531 11.778 -3.391 3.417  0.006  "O5'" WMP 24 
WMP PBM   PBM   P 0  1 N N N 16.715 -23.087 13.127 -3.652 4.837  0.720  PBM   WMP 25 
WMP OAD   OAD   O 0  1 N N N 16.188 -24.457 12.867 -2.787 5.866  0.100  OAD   WMP 26 
WMP OAE   OAE   O 0  1 N N N 17.922 -23.211 14.076 -5.196 5.253  0.539  OAE   WMP 27 
WMP OAC   OAC   O 0  1 N N N 15.661 -22.175 13.673 -3.307 4.720  2.288  OAC   WMP 28 
WMP "O4'" "O4'" O 0  1 N N N 18.497 -21.868 9.573  -2.901 0.513  -0.001 "O4'" WMP 29 
WMP "C1'" "C1'" C 0  1 N N R 18.855 -21.951 8.196  -2.062 -0.670 0.146  "C1'" WMP 30 
WMP N9    N9    N 0  1 Y N N 19.272 -23.308 7.732  -2.881 -1.885 0.178  N9    WMP 31 
WMP C8    C8    C 0  1 Y N N 18.490 -24.348 7.381  -4.166 -2.003 -0.262 C8    WMP 32 
WMP N7    N7    N 0  1 Y N N 19.260 -25.398 7.088  -4.585 -3.223 -0.087 N7    WMP 33 
WMP C5    C5    C 0  1 Y N N 20.545 -25.075 7.355  -3.598 -3.963 0.474  C5    WMP 34 
WMP C4    C4    C 0  1 Y N N 20.541 -23.748 7.792  -2.493 -3.113 0.651  C4    WMP 35 
WMP N3    N3    N 0  1 Y N N 21.707 -23.157 8.100  -1.381 -3.604 1.187  N3    WMP 36 
WMP C2    C2    C 0  1 Y N N 22.850 -23.839 8.032  -1.312 -4.866 1.553  C2    WMP 37 
WMP N1    N1    N 0  1 Y N N 22.905 -25.093 7.555  -2.326 -5.701 1.411  N1    WMP 38 
WMP C6    C6    C 0  1 Y N N 21.775 -25.726 7.217  -3.476 -5.303 0.879  C6    WMP 39 
WMP N6    N6    N 0  1 N N N 21.882 -27.103 6.741  -4.531 -6.186 0.730  N6    WMP 40 
WMP H1    H1    H 0  1 N N N 15.168 -13.472 11.717 7.175  0.056  0.426  H1    WMP 41 
WMP H2    H2    H 0  1 N N N 13.440 -13.540 13.481 7.851  -1.338 2.340  H2    WMP 42 
WMP H3    H3    H 0  1 N N N 12.394 -15.689 14.106 6.431  -1.444 4.349  H3    WMP 43 
WMP H4    H4    H 0  1 N N N 13.085 -17.764 12.972 4.335  -0.155 4.444  H4    WMP 44 
WMP H5    H5    H 0  1 N N N 14.808 -17.705 11.214 3.659  1.239  2.530  H5    WMP 45 
WMP H6    H6    H 0  1 N N N 16.280 -14.461 10.009 4.308  2.389  0.538  H6    WMP 46 
WMP H7    H7    H 0  1 N N N 17.498 -15.427 11.697 6.756  1.505  -0.749 H7    WMP 47 
WMP H8    H8    H 0  1 N N N 16.490 -18.212 9.649  2.295  1.382  -0.179 H8    WMP 48 
WMP H9    H9    H 0  1 N N N 15.176 -14.456 8.058  6.026  -0.060 -1.662 H9    WMP 49 
WMP H10   H10   H 0  1 N N N 14.685 -15.559 5.909  4.835  -1.456 -3.307 H10   WMP 50 
WMP H11   H11   H 0  1 N N N 15.921 -18.142 4.580  2.187  -1.554 -4.551 H11   WMP 51 
WMP H12   H12   H 0  1 N N N 14.154 -18.248 4.889  1.759  -2.569 -3.145 H12   WMP 52 
WMP H13   H13   H 0  1 N N N 17.344 -21.908 6.743  -1.776 -0.916 -1.985 H13   WMP 53 
WMP H14   H14   H 0  1 N N N 16.752 -20.395 9.139  -0.260 1.065  -0.151 H14   WMP 54 
WMP H15   H15   H 0  1 N N N 16.907 -23.303 9.013  -2.724 1.613  -1.779 H15   WMP 55 
WMP H16   H16   H 0  1 N N N 15.920 -21.311 10.881 -1.688 2.662  0.899  H16   WMP 56 
WMP H17   H17   H 0  1 N N N 15.603 -23.074 10.748 -1.436 3.490  -0.656 H17   WMP 57 
WMP H18   H18   H 0  1 N N N 18.067 -24.126 14.287 -5.425 6.100  0.946  H18   WMP 58 
WMP H19   H19   H 0  1 N N N 14.842 -22.649 13.752 -3.837 4.062  2.760  H19   WMP 59 
WMP H20   H20   H 0  1 N N N 19.719 -21.288 8.041  -1.445 -0.597 1.041  H20   WMP 60 
WMP H21   H21   H 0  1 N N N 17.411 -24.334 7.343  -4.750 -1.203 -0.691 H21   WMP 61 
WMP H22   H22   H 0  1 N N N 23.761 -23.368 8.371  -0.393 -5.234 1.985  H22   WMP 62 
WMP H23   H23   H 0  1 N N N 22.842 -27.382 6.739  -5.367 -5.883 0.342  H23   WMP 63 
WMP H24   H24   H 0  1 N N N 21.361 -27.706 7.345  -4.435 -7.109 1.013  H24   WMP 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WMP CAP   OAU   SING N N 1  
WMP CAP   CBC   SING N N 2  
WMP OAU   BA    SING N N 3  
WMP CBC   CAL   DOUB Y N 4  
WMP CBC   CBD   SING Y N 5  
WMP CAL   CAK   SING Y N 6  
WMP N6    C6    SING N N 7  
WMP BA    "O2'" SING N N 8  
WMP BA    CBD   SING N N 9  
WMP BA    "O3'" SING N N 10 
WMP N7    C5    SING Y N 11 
WMP N7    C8    DOUB Y N 12 
WMP "O2'" "C2'" SING N N 13 
WMP C6    C5    DOUB Y N 14 
WMP C6    N1    SING Y N 15 
WMP C5    C4    SING Y N 16 
WMP C8    N9    SING Y N 17 
WMP N1    C2    DOUB Y N 18 
WMP "C2'" "C1'" SING N N 19 
WMP "C2'" "C3'" SING N N 20 
WMP CBD   CAN   DOUB Y N 21 
WMP N9    C4    SING Y N 22 
WMP N9    "C1'" SING N N 23 
WMP C4    N3    DOUB Y N 24 
WMP "O3'" "C3'" SING N N 25 
WMP CAK   CBB   DOUB Y N 26 
WMP C2    N3    SING Y N 27 
WMP "C1'" "O4'" SING N N 28 
WMP "C3'" "C4'" SING N N 29 
WMP CAN   CBB   SING Y N 30 
WMP CBB   CBG   SING N N 31 
WMP "C4'" "O4'" SING N N 32 
WMP "C4'" "C5'" SING N N 33 
WMP CBG   OAB   SING N N 34 
WMP CBG   CBA   SING N N 35 
WMP "C5'" "O5'" SING N N 36 
WMP CBA   CAJ   DOUB Y N 37 
WMP CBA   CAI   SING Y N 38 
WMP CAJ   CAH   SING Y N 39 
WMP "O5'" PBM   SING N N 40 
WMP CAI   CAG   DOUB Y N 41 
WMP CAH   CAF   DOUB Y N 42 
WMP OAD   PBM   DOUB N N 43 
WMP CAG   CAF   SING Y N 44 
WMP PBM   OAC   SING N N 45 
WMP PBM   OAE   SING N N 46 
WMP CAI   H1    SING N N 47 
WMP CAG   H2    SING N N 48 
WMP CAF   H3    SING N N 49 
WMP CAH   H4    SING N N 50 
WMP CAJ   H5    SING N N 51 
WMP CBG   H6    SING N N 52 
WMP OAB   H7    SING N N 53 
WMP CAN   H8    SING N N 54 
WMP CAK   H9    SING N N 55 
WMP CAL   H10   SING N N 56 
WMP CAP   H11   SING N N 57 
WMP CAP   H12   SING N N 58 
WMP "C2'" H13   SING N N 59 
WMP "C3'" H14   SING N N 60 
WMP "C4'" H15   SING N N 61 
WMP "C5'" H16   SING N N 62 
WMP "C5'" H17   SING N N 63 
WMP OAE   H18   SING N N 64 
WMP OAC   H19   SING N N 65 
WMP "C1'" H20   SING N N 66 
WMP C8    H21   SING N N 67 
WMP C2    H22   SING N N 68 
WMP N6    H23   SING N N 69 
WMP N6    H24   SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WMP InChI            InChI                1.03  
"InChI=1S/C24H24BN5O9P/c26-22-18-23(28-11-27-22)30(12-29-18)24-21-20(17(37-24)10-36-40(32,33)34)38-25(39-21)16-8-14(6-7-15(16)9-35-25)19(31)13-4-2-1-3-5-13/h1-8,11-12,17,19-21,24,31H,9-10H2,(H2,26,27,28)(H2,32,33,34)/q-1/t17-,19+,20-,21+,24+,25-/m0/s1" 
WMP InChIKey         InChI                1.03  XRLFSRQDERUGQF-ZZEVEECHSA-N 
WMP SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H](CO[P](O)(O)=O)[C@@H]4O[B-]5(OCc6ccc(cc56)[C@H](O)c7ccccc7)O[C@@H]34" 
WMP SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH]4O[B-]5(OCc6ccc(cc56)[CH](O)c7ccccc7)O[CH]34" 
WMP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[B-]12(c3cc(ccc3CO1)[C@@H](c4ccccc4)O)O[C@H]5[C@@H](O[C@H]([C@@H]5O2)n6cnc7c6ncnc7N)COP(=O)(O)O" 
WMP SMILES           "OpenEye OEToolkits" 1.7.6 "[B-]12(c3cc(ccc3CO1)C(c4ccccc4)O)OC5C(OC(C5O2)n6cnc7c6ncnc7N)COP(=O)(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
;[(1R,5R,6R,8S)-6-(6-aminopurin-9-yl)-3'-[(R)-oxidanyl(phenyl)methyl]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-8-yl]methyl dihydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WMP "Create component" 2013-05-10 PDBJ 
WMP "Modify atom id"   2013-06-20 PDBJ 
WMP "Initial release"  2013-09-04 RCSB 
# 
