data_XGP
#

_chem_comp.id                                   XGP
_chem_comp.name                                 1-O-phosphono-beta-D-glucopyranose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H13 O9 P"
_chem_comp.mon_nstd_parent_comp_id              BGC
_chem_comp.pdbx_synonyms                        "1-O-phosphono-beta-D-glucose; 1-O-phosphono-D-glucose; 1-O-phosphono-glucose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-10-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       260.136
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XGP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3K4Z
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  XGP  1-O-phosphono-beta-D-glucose  PDB  ?  
2  XGP  1-O-phosphono-D-glucose       PDB  ?  
3  XGP  1-O-phosphono-glucose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XGP  P     P     P  0  1  N  N  N  18.896  19.352  62.371   2.813   0.069  -0.072  P     XGP   1  
XGP  C1    C1    C  0  1  N  N  S  20.048  17.079  61.912   0.178  -0.373  -0.034  C1    XGP   2  
XGP  C2    C2    C  0  1  N  N  R  20.347  15.833  62.732  -0.705  -1.559   0.364  C2    XGP   3  
XGP  O2    O2    O  0  1  N  N  N  20.810  16.207  64.043  -0.121  -2.771  -0.115  O2    XGP   4  
XGP  C3    C3    C  0  1  N  N  S  21.323  14.940  61.987  -2.095  -1.380  -0.254  C3    XGP   5  
XGP  O3    O3    O  0  1  N  N  N  21.447  13.706  62.675  -2.948  -2.445   0.172  O3    XGP   6  
XGP  C4    C4    C  0  1  N  N  S  20.674  14.718  60.610  -2.679  -0.041   0.205  C4    XGP   7  
XGP  O4    O4    O  0  1  N  N  N  21.412  13.784  59.816  -3.945   0.169  -0.422  O4    XGP   8  
XGP  C5    C5    C  0  1  N  N  R  20.540  16.068  59.895  -1.719   1.086  -0.187  C5    XGP   9  
XGP  O5    O5    O  0  1  N  N  N  19.516  16.762  60.599  -0.438   0.843   0.396  O5    XGP  10  
XGP  C6    C6    C  0  1  N  N  N  20.207  15.890  58.384  -2.266   2.421   0.322  C6    XGP  11  
XGP  O6    O6    O  0  1  N  N  N  19.360  16.958  57.885  -1.433   3.485  -0.143  O6    XGP  12  
XGP  O1    OP1   O  0  1  N  N  N  19.130  17.791  62.721   1.459  -0.504   0.585  O1    XGP  13  
XGP  OP2   OP2   O  0  1  N  N  N  18.427  19.557  60.959   2.968  -0.479  -1.438  OP2   XGP  14  
XGP  OP3   OP3   O  0  1  N  N  N  20.247  20.151  62.755   2.737   1.675  -0.143  OP3   XGP  15  
XGP  OP4   OP4   O  0  1  N  N  N  17.753  19.810  63.430   4.073  -0.370   0.829  OP4   XGP  16  
XGP  H1    H1    H  0  1  N  N  N  20.949  17.668  61.685   0.298  -0.356  -1.117  H1    XGP  17  
XGP  H2    H2    H  0  1  N  N  N  19.428  15.246  62.875  -0.791  -1.600   1.450  H2    XGP  18  
XGP  HO2   HO2   H  0  1  N  Y  N  20.995  15.425  64.549   0.765  -2.946   0.233  HO2   XGP  19  
XGP  H3    H3    H  0  1  N  N  N  22.328  15.378  61.904  -2.014  -1.391  -1.341  H3    XGP  20  
XGP  HO3   HO3   H  0  1  N  Y  N  22.057  13.144  62.212  -2.635  -3.325  -0.080  HO3   XGP  21  
XGP  H4    H4    H  0  1  N  N  N  19.675  14.281  60.758  -2.806  -0.051   1.288  H4    XGP  22  
XGP  HO4   HO4   H  0  1  N  Y  N  20.982  13.673  58.976  -4.602  -0.512  -0.220  HO4   XGP  23  
XGP  H5    H5    H  0  1  N  N  N  21.483  16.634  59.905  -1.625   1.122  -1.272  H5    XGP  24  
XGP  H61   H6    H  0  1  N  N  N  21.148  15.892  57.814  -3.280   2.565  -0.051  H61   XGP  25  
XGP  H62   H6A   H  0  1  N  N  N  19.682  14.933  58.250  -2.277   2.418   1.412  H62   XGP  26  
XGP  HO6   HO6   H  0  1  N  Y  N  19.179  16.815  56.963  -1.721   4.364   0.142  HO6   XGP  27  
XGP  HOP3  HOP3  H  0  0  N  N  N  20.548  20.645  62.002   2.635   2.103   0.718  HOP3  XGP  28  
XGP  HOP4  HOP4  H  0  0  N  N  N  16.992  20.126  62.958   4.925  -0.059   0.492  HOP4  XGP  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XGP  OP2  P     DOUB  N  N   1  
XGP  P    O1    SING  N  N   2  
XGP  P    OP3   SING  N  N   3  
XGP  P    OP4   SING  N  N   4  
XGP  O5   C1    SING  N  N   5  
XGP  C1   O1    SING  N  N   6  
XGP  C1   C2    SING  N  N   7  
XGP  C1   H1    SING  N  N   8  
XGP  C3   C2    SING  N  N   9  
XGP  C2   O2    SING  N  N  10  
XGP  C2   H2    SING  N  N  11  
XGP  O2   HO2   SING  N  N  12  
XGP  C4   C3    SING  N  N  13  
XGP  C3   O3    SING  N  N  14  
XGP  C3   H3    SING  N  N  15  
XGP  O3   HO3   SING  N  N  16  
XGP  O4   C4    SING  N  N  17  
XGP  C5   C4    SING  N  N  18  
XGP  C4   H4    SING  N  N  19  
XGP  O4   HO4   SING  N  N  20  
XGP  C6   C5    SING  N  N  21  
XGP  C5   O5    SING  N  N  22  
XGP  C5   H5    SING  N  N  23  
XGP  O6   C6    SING  N  N  24  
XGP  C6   H61   SING  N  N  25  
XGP  C6   H62   SING  N  N  26  
XGP  O6   HO6   SING  N  N  27  
XGP  OP3  HOP3  SING  N  N  28  
XGP  OP4  HOP4  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XGP  SMILES            ACDLabs               11.02  "O=P(O)(OC1OC(C(O)C(O)C1O)CO)O"  
XGP  SMILES_CANONICAL  CACTVS                3.352  "OC[C@H]1O[C@@H](O[P](O)(O)=O)[C@H](O)[C@@H](O)[C@@H]1O"  
XGP  SMILES            CACTVS                3.352  "OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"  
XGP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)OP(=O)(O)O)O)O)O)O"  
XGP  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)O"  
XGP  InChI             InChI                 1.03   "InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6+/m1/s1"  
XGP  InChIKey          InChI                 1.03   HXXFSFRBOHSIMQ-DVKNGEFBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XGP  "SYSTEMATIC NAME"            ACDLabs               11.02  1-O-phosphono-beta-D-glucopyranose  
XGP  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.6.1  "[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] dihydrogen phosphate"  
XGP  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-D-Glcp1PO3  
#
_pdbx_chem_comp_related.comp_id            XGP
_pdbx_chem_comp_related.related_comp_id    BGC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  XGP  C1   BGC  C1   "Carbohydrate core"  
 2  XGP  C2   BGC  C2   "Carbohydrate core"  
 3  XGP  C3   BGC  C3   "Carbohydrate core"  
 4  XGP  C4   BGC  C4   "Carbohydrate core"  
 5  XGP  C5   BGC  C5   "Carbohydrate core"  
 6  XGP  C6   BGC  C6   "Carbohydrate core"  
 7  XGP  O2   BGC  O2   "Carbohydrate core"  
 8  XGP  O3   BGC  O3   "Carbohydrate core"  
 9  XGP  O4   BGC  O4   "Carbohydrate core"  
10  XGP  O5   BGC  O5   "Carbohydrate core"  
11  XGP  O6   BGC  O6   "Carbohydrate core"  
12  XGP  O1   BGC  O1   "Carbohydrate core"  
13  XGP  H1   BGC  H1   "Carbohydrate core"  
14  XGP  H2   BGC  H2   "Carbohydrate core"  
15  XGP  H3   BGC  H3   "Carbohydrate core"  
16  XGP  H4   BGC  H4   "Carbohydrate core"  
17  XGP  H5   BGC  H5   "Carbohydrate core"  
18  XGP  H61  BGC  H61  "Carbohydrate core"  
19  XGP  H62  BGC  H62  "Carbohydrate core"  
20  XGP  HO2  BGC  HO2  "Carbohydrate core"  
21  XGP  HO3  BGC  HO3  "Carbohydrate core"  
22  XGP  HO4  BGC  HO4  "Carbohydrate core"  
23  XGP  HO6  BGC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
XGP  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
XGP  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
XGP  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
XGP  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XGP  "Create component"          2009-10-07  RCSB  
XGP  "Modify descriptor"         2011-06-04  RCSB  
XGP  "Other modification"        2020-07-03  RCSB  
XGP  "Modify parent residue"     2020-07-17  RCSB  
XGP  "Modify synonyms"           2020-07-17  RCSB  
XGP  "Modify internal type"      2020-07-17  RCSB  
XGP  "Modify linking type"       2020-07-17  RCSB  
XGP  "Modify atom id"            2020-07-17  RCSB  
XGP  "Modify component atom id"  2020-07-17  RCSB  
XGP  "Modify leaving atom flag"  2020-07-17  RCSB  
##
