data_XTP
# 
_chem_comp.id                                    XTP 
_chem_comp.name                                  "benzyl [(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H29 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        403.472 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XTP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LCS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XTP C10  C1  C 0 1 N N N N N N -11.609 15.658 4.358  5.561  -1.436 -1.208 C10  XTP 1  
XTP C15  C2  C 0 1 N N N N N N -16.386 12.883 -0.582 0.389  2.843  0.032  C15  XTP 2  
XTP C17  C3  C 0 1 N N N N N N -18.788 13.729 -0.384 -0.265 5.193  -0.912 C17  XTP 3  
XTP C20  C4  C 0 1 N N N N N N -15.041 16.307 0.224  -2.022 0.082  -0.296 C20  XTP 4  
XTP C22  C5  C 0 1 N N N N N N -14.164 18.492 -0.008 -3.986 -1.233 -0.627 C22  XTP 5  
XTP C24  C6  C 0 1 Y N N N N N -11.783 19.171 0.446  -5.859 -1.862 0.910  C24  XTP 6  
XTP C26  C7  C 0 1 Y N N N N N -9.740  18.022 -0.383 -8.122 -1.237 0.440  C26  XTP 7  
XTP C28  C8  C 0 1 Y N N N N N -12.005 17.138 -0.940 -6.369 -0.604 -1.062 C28  XTP 8  
XTP C02  C9  C 0 1 N N N N N N -14.255 13.379 0.643  0.924  0.534  0.762  C02  XTP 9  
XTP C04  C10 C 0 1 N N S N N N -12.637 12.439 2.365  3.118  -0.228 1.500  C04  XTP 10 
XTP C05  C11 C 0 1 N N N N N N -12.279 13.281 3.595  4.467  -0.467 0.821  C05  XTP 11 
XTP C06  C12 C 0 1 N N S N N N -11.956 14.758 3.190  4.259  -1.291 -0.452 C06  XTP 12 
XTP C07  C13 C 0 1 N N N N N N -10.758 14.777 2.297  3.862  -2.743 -0.097 C07  XTP 13 
XTP C08  C14 C 0 1 N N N N N N -10.098 16.144 2.563  4.590  -3.546 -1.198 C08  XTP 14 
XTP C12  C15 C 0 1 N N N N N N -12.691 10.915 2.564  3.336  0.515  2.820  C12  XTP 15 
XTP C14  C16 C 0 1 N N S N N N -15.665 13.857 0.324  0.046  1.362  -0.141 C14  XTP 16 
XTP C16  C17 C 0 1 N N N N N N -17.791 12.669 -0.008 -0.401 3.671  -0.984 C16  XTP 17 
XTP C18  C18 C 0 1 N N N N N N -18.869 12.355 -1.059 0.393  4.419  -2.056 C18  XTP 18 
XTP C23  C19 C 0 1 Y N N N N N -12.612 18.303 -0.130 -5.445 -1.233 -0.249 C23  XTP 19 
XTP C25  C20 C 0 1 Y N N N N N -10.251 19.021 0.321  -7.198 -1.867 1.253  C25  XTP 20 
XTP C27  C21 C 0 1 Y N N N N N -10.682 17.010 -1.056 -7.707 -0.604 -0.716 C27  XTP 21 
XTP N03  N1  N 0 1 N N N N N N -13.960 12.925 1.993  2.264  0.577  0.623  N03  XTP 22 
XTP N09  N2  N 0 1 N N N N N N -10.461 16.515 3.982  5.720  -2.707 -1.614 N09  XTP 23 
XTP N19  N3  N 0 1 N N N N N N -15.595 15.094 -0.385 -1.359 1.142  0.209  N19  XTP 24 
XTP O01  O1  O 0 1 N N N N N N -13.394 13.358 -0.158 0.425  -0.170 1.614  O01  XTP 25 
XTP O11  O2  O 0 1 N N N N N N -12.130 15.719 5.415  6.344  -0.535 -1.422 O11  XTP 26 
XTP O13  O3  O 0 1 N N N N N N -11.690 10.346 2.939  4.071  1.716  2.575  O13  XTP 27 
XTP O21  O4  O 0 1 N N N N N N -14.862 17.411 -0.639 -3.337 -0.068 -0.051 O21  XTP 28 
XTP O29  O5  O 0 1 N N N N N N -14.728 16.369 1.391  -1.432 -0.738 -0.971 O29  XTP 29 
XTP H151 H1  H 0 0 N N N N N N -15.843 11.927 -0.612 0.129  3.161  1.041  H151 XTP 30 
XTP H152 H2  H 0 0 N N N N N N -16.455 13.297 -1.599 1.457  2.990  -0.132 H152 XTP 31 
XTP H172 H3  H 0 0 N N N N N N -18.463 14.606 -0.964 -1.147 5.789  -1.150 H172 XTP 32 
XTP H171 H4  H 0 0 N N N N N N -19.563 14.032 0.336  0.387  5.605  -0.142 H171 XTP 33 
XTP H221 H5  H 0 0 N N N N N N -14.451 19.437 -0.492 -3.512 -2.138 -0.246 H221 XTP 34 
XTP H222 H6  H 0 0 N N N N N N -14.440 18.526 1.056  -3.891 -1.202 -1.712 H222 XTP 35 
XTP H241 H7  H 0 0 N N N N N N -12.190 19.996 1.012  -5.137 -2.353 1.545  H241 XTP 36 
XTP H261 H8  H 0 0 N N N N N N -8.670  17.919 -0.484 -9.168 -1.241 0.708  H261 XTP 37 
XTP H281 H9  H 0 0 N N N N N N -12.656 16.421 -1.417 -6.045 -0.112 -1.968 H281 XTP 38 
XTP H041 H10 H 0 0 N N N N N N -11.919 12.664 1.562  2.636  -1.185 1.698  H041 XTP 39 
XTP H052 H11 H 0 0 N N N N N N -13.129 13.277 4.293  4.919  0.491  0.563  H052 XTP 40 
XTP H051 H12 H 0 0 N N N N N N -11.398 12.842 4.087  5.126  -1.008 1.500  H051 XTP 41 
XTP H061 H13 H 0 0 N N N N N N -12.822 15.174 2.655  3.500  -0.830 -1.084 H061 XTP 42 
XTP H071 H14 H 0 0 N N N N N N -11.058 14.689 1.242  4.232  -3.014 0.892  H071 XTP 43 
XTP H072 H15 H 0 0 N N N N N N -10.070 13.957 2.552  2.783  -2.883 -0.160 H072 XTP 44 
XTP H082 H16 H 0 0 N N N N N N -9.006  16.068 2.456  4.948  -4.495 -0.798 H082 XTP 45 
XTP H081 H17 H 0 0 N N N N N N -10.484 16.897 1.861  3.923  -3.719 -2.042 H081 XTP 46 
XTP H121 H18 H 0 0 N N N N N N -13.477 10.712 3.306  2.371  0.764  3.261  H121 XTP 47 
XTP H141 H19 H 0 0 N N N N N N -16.231 13.976 1.260  0.213  1.069  -1.178 H141 XTP 48 
XTP H161 H20 H 0 0 N N N N N N -17.879 12.190 0.978  -1.372 3.265  -1.267 H161 XTP 49 
XTP H181 H21 H 0 0 N N N N N N -19.693 11.668 -0.819 -0.056 4.505  -3.046 H181 XTP 50 
XTP H182 H22 H 0 0 N N N N N N -18.594 12.241 -2.118 1.478  4.321  -2.039 H182 XTP 51 
XTP H251 H23 H 0 0 N N N N N N -9.597  19.730 0.807  -7.522 -2.362 2.157  H251 XTP 52 
XTP H271 H24 H 0 0 N N N N N N -10.270 16.190 -1.626 -8.429 -0.113 -1.352 H271 XTP 53 
XTP H031 H25 H 0 0 N N N N N N -14.683 12.947 2.683  2.663  1.140  -0.059 H031 XTP 54 
XTP H091 H26 H 0 0 N N N N N N -10.015 17.203 4.554  6.487  -3.030 -2.112 H091 XTP 55 
XTP H191 H27 H 0 0 N N N N N N -15.934 15.134 -1.325 -1.813 1.759  0.804  H191 XTP 56 
XTP H1   H28 H 0 1 N Y N N N N -12.975 10.471 1.598  3.896  -0.120 3.506  H1   XTP 57 
XTP H2   H29 H 0 1 N N N N N N -11.865 9.416  3.019  4.246  2.239  3.369  H2   XTP 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XTP C18 C17  SING N N 1  
XTP C18 C16  SING N N 2  
XTP C27 C28  DOUB Y N 3  
XTP C27 C26  SING Y N 4  
XTP C28 C23  SING Y N 5  
XTP O21 C22  SING N N 6  
XTP O21 C20  SING N N 7  
XTP C15 C16  SING N N 8  
XTP C15 C14  SING N N 9  
XTP N19 C20  SING N N 10 
XTP N19 C14  SING N N 11 
XTP C17 C16  SING N N 12 
XTP C26 C25  DOUB Y N 13 
XTP O01 C02  DOUB N N 14 
XTP C23 C22  SING N N 15 
XTP C23 C24  DOUB Y N 16 
XTP C20 O29  DOUB N N 17 
XTP C25 C24  SING Y N 18 
XTP C14 C02  SING N N 19 
XTP C02 N03  SING N N 20 
XTP N03 C04  SING N N 21 
XTP C07 C08  SING N N 22 
XTP C07 C06  SING N N 23 
XTP C04 C12  SING N N 24 
XTP C04 C05  SING N N 25 
XTP C08 N09  SING N N 26 
XTP C12 O13  SING N N 27 
XTP C06 C05  SING N N 28 
XTP C06 C10  SING N N 29 
XTP N09 C10  SING N N 30 
XTP C10 O11  DOUB N N 31 
XTP C15 H151 SING N N 32 
XTP C15 H152 SING N N 33 
XTP C17 H172 SING N N 34 
XTP C17 H171 SING N N 35 
XTP C22 H221 SING N N 36 
XTP C22 H222 SING N N 37 
XTP C24 H241 SING N N 38 
XTP C26 H261 SING N N 39 
XTP C28 H281 SING N N 40 
XTP C04 H041 SING N N 41 
XTP C05 H052 SING N N 42 
XTP C05 H051 SING N N 43 
XTP C06 H061 SING N N 44 
XTP C07 H071 SING N N 45 
XTP C07 H072 SING N N 46 
XTP C08 H082 SING N N 47 
XTP C08 H081 SING N N 48 
XTP C12 H121 SING N N 49 
XTP C14 H141 SING N N 50 
XTP C16 H161 SING N N 51 
XTP C18 H181 SING N N 52 
XTP C18 H182 SING N N 53 
XTP C25 H251 SING N N 54 
XTP C27 H271 SING N N 55 
XTP N03 H031 SING N N 56 
XTP N09 H091 SING N N 57 
XTP N19 H191 SING N N 58 
XTP C12 H1   SING N N 59 
XTP O13 H2   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XTP SMILES           ACDLabs              12.01 "C3(=O)C(CC(CO)NC(C(CC1CC1)NC(=O)OCc2ccccc2)=O)CCN3"                                                                                                                                  
XTP InChI            InChI                1.03  "InChI=1S/C21H29N3O5/c25-12-17(11-16-8-9-22-19(16)26)23-20(27)18(10-14-6-7-14)24-21(28)29-13-15-4-2-1-3-5-15/h1-5,14,16-18,25H,6-13H2,(H,22,26)(H,23,27)(H,24,28)/t16-,17-,18-/m0/s1" 
XTP InChIKey         InChI                1.03  PJKBYKVMAKWNAK-BZSNNMDCSA-N                                                                                                                                                           
XTP SMILES_CANONICAL CACTVS               3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CC2)NC(=O)OCc3ccccc3"                                                                                                                         
XTP SMILES           CACTVS               3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CC2)NC(=O)OCc3ccccc3"                                                                                                                             
XTP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO"                                                                                                                     
XTP SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NC(CC2CC2)C(=O)NC(CC3CCNC3=O)CO"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XTP "SYSTEMATIC NAME" ACDLabs              12.01 "benzyl [(2S)-3-cyclopropyl-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]carbamate"                                            
XTP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XTP "Create component" 2021-01-13 RCSB 
XTP "Initial release"  2021-07-07 RCSB 
XTP "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XTP 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
