data_YAP
# 
_chem_comp.id                                    YAP 
_chem_comp.name                                  "5'-O-[(R)-{[(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]oxy}(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H23 N6 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-09-07 
_chem_comp.pdbx_modified_date                    2015-03-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.394 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YAP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VGJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YAP C      C      C 0 1 N N N 6.639  -2.983 53.207 3.908  -1.589 -0.516 C      YAP 1  
YAP N      N      N 0 1 N N N 6.267  -3.042 50.745 6.331  -1.535 -0.329 N      YAP 2  
YAP O      O      O 0 1 N N N 5.343  -2.546 53.521 4.057  -2.436 -1.365 O      YAP 3  
YAP P      P      P 0 1 N N N 7.272  -2.262 55.735 1.469  -2.222 -0.606 P      YAP 4  
YAP N1     N1     N 0 1 Y N N 12.815 -7.455 61.244 -7.648 3.106  0.176  N1     YAP 5  
YAP C2     C2     C 0 1 Y N N 13.725 -6.959 60.198 -7.530 2.181  1.111  C2     YAP 6  
YAP N3     N3     N 0 1 Y N N 13.194 -6.020 59.153 -6.519 1.339  1.149  N3     YAP 7  
YAP C4     C4     C 0 1 Y N N 11.790 -5.636 59.186 -5.561 1.390  0.230  C4     YAP 8  
YAP C5     C5     C 0 1 Y N N 10.873 -6.114 60.231 -5.640 2.357  -0.787 C5     YAP 9  
YAP C6     C6     C 0 1 Y N N 11.409 -7.044 61.275 -6.739 3.233  -0.785 C6     YAP 10 
YAP N6     N6     N 0 1 N N N 10.544 -7.522 62.317 -6.871 4.205  -1.761 N6     YAP 11 
YAP N7     N7     N 0 1 Y N N 9.550  -5.539 59.979 -4.553 2.193  -1.579 N7     YAP 12 
YAP C8     C8     C 0 1 Y N N 9.631  -4.695 58.795 -3.829 1.212  -1.124 C8     YAP 13 
YAP N9     N9     N 0 1 Y N N 11.040 -4.775 58.324 -4.409 0.683  -0.009 N9     YAP 14 
YAP CA     CA     C 0 1 N N S 7.083  -2.487 51.816 5.094  -0.804 -0.019 CA     YAP 15 
YAP CB     CB     C 0 1 N N N 7.129  -0.948 51.736 5.124  0.563  -0.704 CB     YAP 16 
YAP CG     CG     C 0 1 Y N N 7.796  -0.590 50.313 6.236  1.395  -0.119 CG     YAP 17 
YAP OH     OH     O 0 1 N N N 9.715  0.252  46.477 9.281  3.672  1.483  OH     YAP 18 
YAP CZ     CZ     C 0 1 Y N N 9.042  -0.010 47.781 8.278  2.922  0.955  CZ     YAP 19 
YAP "C1'"  "C1'"  C 0 1 N N R 11.635 -4.126 57.189 -3.896 -0.434 0.788  "C1'"  YAP 20 
YAP O1P    O1P    O 0 1 N N N 6.299  -3.224 56.211 1.780  -3.661 -0.455 O1P    YAP 21 
YAP "C2'"  "C2'"  C 0 1 N N R 10.892 -4.579 55.945 -4.545 -1.768 0.338  "C2'"  YAP 22 
YAP "O2'"  "O2'"  O 0 1 N N N 11.391 -5.806 55.459 -5.785 -1.985 1.014  "O2'"  YAP 23 
YAP O2P    O2P    O 0 1 N N N 6.735  -0.732 55.976 1.265  -1.878 -2.166 O2P    YAP 24 
YAP "C3'"  "C3'"  C 0 1 N N S 11.112 -3.445 55.006 -3.486 -2.808 0.780  "C3'"  YAP 25 
YAP "O3'"  "O3'"  O 0 1 N N N 12.376 -3.643 54.437 -3.845 -3.385 2.037  "O3'"  YAP 26 
YAP O3P    O3P    O 0 1 N N N 7.572  -2.468 54.112 2.686  -1.345 -0.019 O3P    YAP 27 
YAP "C4'"  "C4'"  C 0 1 N N R 11.133 -2.219 55.950 -2.187 -1.991 0.913  "C4'"  YAP 28 
YAP "O4'"  "O4'"  O 0 1 N N N 11.479 -2.697 57.294 -2.490 -0.639 0.530  "O4'"  YAP 29 
YAP "C5'"  "C5'"  C 0 1 N N N 9.766  -1.524 56.061 -1.113 -2.565 -0.014 "C5'"  YAP 30 
YAP "O5'"  "O5'"  O 0 1 N N N 8.771  -2.451 56.420 0.120  -1.876 0.201  "O5'"  YAP 31 
YAP CD1    CD1    C 0 1 Y N N 9.260  -0.849 50.127 7.501  1.346  -0.675 CD1    YAP 32 
YAP CD2    CD2    C 0 1 Y N N 7.035  -0.083 49.266 5.989  2.210  0.970  CD2    YAP 33 
YAP CE1    CE1    C 0 1 Y N N 9.863  -0.563 48.908 8.522  2.107  -0.141 CE1    YAP 34 
YAP CE2    CE2    C 0 1 Y N N 7.682  0.224  47.949 7.007  2.973  1.508  CE2    YAP 35 
YAP HN     HN     H 0 1 N N N 6.590  -2.694 49.865 6.428  -1.673 -1.324 HN     YAP 36 
YAP HNA    HNA    H 0 1 N N N 6.337  -4.039 50.755 7.136  -1.060 0.051  HNA    YAP 37 
YAP H2     H2     H 0 1 N N N 14.760 -7.266 60.182 -8.292 2.113  1.873  H2     YAP 38 
YAP HN6    HN6    H 0 1 N N N 11.060 -8.120 62.931 -7.634 4.804  -1.749 HN6    YAP 39 
YAP HN6A   HN6A   H 0 0 N N N 10.183 -6.745 62.833 -6.200 4.288  -2.457 HN6A   YAP 40 
YAP H8     H8     H 0 1 N N N 8.829  -4.125 58.349 -2.906 0.867  -1.565 H8     YAP 41 
YAP HA     HA     H 0 1 N N N 8.114  -2.842 51.669 5.014  -0.668 1.060  HA     YAP 42 
YAP HB     HB     H 0 1 N N N 6.112  -0.533 51.795 5.294  0.431  -1.773 HB     YAP 43 
YAP HBA    HBA    H 0 1 N N N 7.739  -0.542 52.556 4.172  1.069  -0.548 HBA    YAP 44 
YAP HOH    HOH    H 0 1 N N N 9.083  0.598  45.858 9.359  4.554  1.095  HOH    YAP 45 
YAP "H1'"  "H1'"  H 0 1 N N N 12.698 -4.394 57.101 -4.073 -0.259 1.849  "H1'"  YAP 46 
YAP "H2'"  "H2'"  H 0 1 N N N 9.820  -4.661 56.176 -4.684 -1.788 -0.742 "H2'"  YAP 47 
YAP "HO2'" "HO2'" H 0 0 N N N 10.906 -6.060 54.683 -6.229 -2.807 0.766  "HO2'" YAP 48 
YAP HO2P   HO2P   H 0 0 N N N 5.879  -0.757 56.386 1.057  -0.950 -2.340 HO2P   YAP 49 
YAP "H3'"  "H3'"  H 0 1 N N N 10.305 -3.361 54.264 -3.375 -3.584 0.023  "H3'"  YAP 50 
YAP "HO3'" "HO3'" H 0 0 N N N 12.563 -2.940 53.826 -4.686 -3.862 2.025  "HO3'" YAP 51 
YAP "H4'"  "H4'"  H 0 1 N N N 11.883 -1.498 55.594 -1.838 -2.014 1.946  "H4'"  YAP 52 
YAP "H5'"  "H5'"  H 0 1 N N N 9.821  -0.737 56.827 -0.979 -3.626 0.199  "H5'"  YAP 53 
YAP "H5'A" "H5'A" H 0 0 N N N 9.509  -1.074 55.091 -1.424 -2.439 -1.051 "H5'A" YAP 54 
YAP HD1    HD1    H 0 1 N N N 9.845  -1.257 50.938 7.691  0.711  -1.528 HD1    YAP 55 
YAP HD2    HD2    H 0 1 N N N 5.978  0.090  49.401 4.999  2.250  1.400  HD2    YAP 56 
YAP HE1    HE1    H 0 1 N N N 10.920 -0.738 48.772 9.511  2.065  -0.573 HE1    YAP 57 
YAP HE2    HE2    H 0 1 N N N 7.095  0.625  47.136 6.814  3.607  2.362  HE2    YAP 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YAP C     O      DOUB N N 1  
YAP C     CA     SING N N 2  
YAP C     O3P    SING N N 3  
YAP N     CA     SING N N 4  
YAP P     O1P    DOUB N N 5  
YAP P     O2P    SING N N 6  
YAP P     O3P    SING N N 7  
YAP P     "O5'"  SING N N 8  
YAP N1    C2     DOUB Y N 9  
YAP N1    C6     SING Y N 10 
YAP C2    N3     SING Y N 11 
YAP N3    C4     DOUB Y N 12 
YAP C4    C5     SING Y N 13 
YAP C4    N9     SING Y N 14 
YAP C5    C6     DOUB Y N 15 
YAP C5    N7     SING Y N 16 
YAP C6    N6     SING N N 17 
YAP N7    C8     DOUB Y N 18 
YAP C8    N9     SING Y N 19 
YAP N9    "C1'"  SING N N 20 
YAP CA    CB     SING N N 21 
YAP CB    CG     SING N N 22 
YAP CG    CD1    DOUB Y N 23 
YAP CG    CD2    SING Y N 24 
YAP OH    CZ     SING N N 25 
YAP CZ    CE1    DOUB Y N 26 
YAP CZ    CE2    SING Y N 27 
YAP "C1'" "C2'"  SING N N 28 
YAP "C1'" "O4'"  SING N N 29 
YAP "C2'" "O2'"  SING N N 30 
YAP "C2'" "C3'"  SING N N 31 
YAP "C3'" "O3'"  SING N N 32 
YAP "C3'" "C4'"  SING N N 33 
YAP "C4'" "O4'"  SING N N 34 
YAP "C4'" "C5'"  SING N N 35 
YAP "C5'" "O5'"  SING N N 36 
YAP CD1   CE1    SING Y N 37 
YAP CD2   CE2    DOUB Y N 38 
YAP N     HN     SING N N 39 
YAP N     HNA    SING N N 40 
YAP C2    H2     SING N N 41 
YAP N6    HN6    SING N N 42 
YAP N6    HN6A   SING N N 43 
YAP C8    H8     SING N N 44 
YAP CA    HA     SING N N 45 
YAP CB    HB     SING N N 46 
YAP CB    HBA    SING N N 47 
YAP OH    HOH    SING N N 48 
YAP "C1'" "H1'"  SING N N 49 
YAP "C2'" "H2'"  SING N N 50 
YAP "O2'" "HO2'" SING N N 51 
YAP O2P   HO2P   SING N N 52 
YAP "C3'" "H3'"  SING N N 53 
YAP "O3'" "HO3'" SING N N 54 
YAP "C4'" "H4'"  SING N N 55 
YAP "C5'" "H5'"  SING N N 56 
YAP "C5'" "H5'A" SING N N 57 
YAP CD1   HD1    SING N N 58 
YAP CD2   HD2    SING N N 59 
YAP CE1   HE1    SING N N 60 
YAP CE2   HE2    SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YAP SMILES           ACDLabs              12.01 "C(=O)(C(N)Cc1ccc(O)cc1)OP(=O)(O)OCC4C(C(C(n3c2ncnc(c2nc3)N)O4)O)O" 
YAP InChI            InChI                1.03  
"InChI=1S/C19H23N6O9P/c20-11(5-9-1-3-10(26)4-2-9)19(29)34-35(30,31)32-6-12-14(27)15(28)18(33-12)25-8-24-13-16(21)22-7-23-17(13)25/h1-4,7-8,11-12,14-15,18,26-28H,5-6,20H2,(H,30,31)(H2,21,22,23)/t11-,12+,14+,15+,18+/m0/s1" 
YAP InChIKey         InChI                1.03  NFCVQVDMLQEZAK-URQYDQELSA-N 
YAP SMILES_CANONICAL CACTVS               3.385 "N[C@@H](Cc1ccc(O)cc1)C(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34" 
YAP SMILES           CACTVS               3.385 "N[CH](Cc1ccc(O)cc1)C(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34" 
YAP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C[C@@H](C(=O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N)O" 
YAP SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1CC(C(=O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YAP "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-{[(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]oxy}(hydroxy)phosphoryl]adenosine"                                                     
YAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S)-2-azanyl-3-(4-hydroxyphenyl)propanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YAP "Create component"   2011-09-07 PDBJ 
YAP "Obsolete component" 2015-03-05 PDBJ 
# 
