data_YLP
# 
_chem_comp.id                                    YLP 
_chem_comp.name                                  "(S)-2-amino-6-propionamidohexanoic(((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric) anhydride" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H30 N7 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-28 
_chem_comp.pdbx_modified_date                    2014-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        531.457 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CH5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLP C      C      C 0 1 N N N 43.525 133.885 -10.946 2.835  3.188  0.301  C      YLP 1  
YLP N      N      N 0 1 N N N 42.753 135.354 -9.244  5.227  3.601  0.180  N      YLP 2  
YLP O      O      O 0 1 N N N 42.631 134.152 -11.742 2.816  3.952  1.236  O      YLP 3  
YLP N1     N1     N 0 1 Y N N 35.951 126.302 -11.722 -6.618 -4.633 -0.174 N1     YLP 4  
YLP C2     C2     C 0 1 Y N N 36.128 126.345 -10.375 -6.929 -3.645 -0.993 C2     YLP 5  
YLP N3     N3     N 0 1 Y N N 37.114 127.029 -9.770  -6.257 -2.514 -1.023 N3     YLP 6  
YLP C4     C4     C 0 1 Y N N 37.984 127.754 -10.537 -5.220 -2.321 -0.214 C4     YLP 7  
YLP C5     C5     C 0 1 Y N N 37.859 127.751 -12.005 -4.849 -3.342 0.676  C5     YLP 8  
YLP C6     C6     C 0 1 Y N N 36.759 126.963 -12.587 -5.598 -4.531 0.671  C6     YLP 9  
YLP N6     N6     N 0 1 N N N 36.598 126.936 -13.932 -5.280 -5.572 1.526  N6     YLP 10 
YLP N7     N7     N 0 1 Y N N 38.822 128.525 -12.505 -3.778 -2.894 1.374  N7     YLP 11 
YLP C8     C8     C 0 1 Y N N 39.540 128.992 -11.450 -3.475 -1.692 0.978  C8     YLP 12 
YLP N9     N9     N 0 1 Y N N 39.047 128.517 -10.282 -4.336 -1.293 -0.001 N9     YLP 13 
YLP CA     CA     C 0 1 N N S 43.946 134.978 -9.983  4.152  2.692  -0.240 CA     YLP 14 
YLP CB     CB     C 0 1 N N N 45.056 134.600 -8.987  4.430  1.288  0.302  CB     YLP 15 
YLP "C1'"  "C1'"  C 0 1 N N R 39.528 128.825 -8.924  -4.319 -0.005 -0.698 "C1'"  YLP 16 
YLP "C2'"  "C2'"  C 0 1 N N R 40.615 127.904 -8.449  -5.297 0.992  -0.026 "C2'"  YLP 17 
YLP "O2'"  "O2'"  O 0 1 N N N 40.470 127.760 -7.035  -6.619 0.839  -0.546 "O2'"  YLP 18 
YLP "C3'"  "C3'"  C 0 1 N N S 41.888 128.653 -8.777  -4.698 2.360  -0.434 "C3'"  YLP 19 
YLP "O3'"  "O3'"  O 0 1 N N N 42.984 128.268 -7.958  -5.386 2.889  -1.569 "O3'"  YLP 20 
YLP "C4'"  "C4'"  C 0 1 N N R 41.453 130.060 -8.467  -3.234 2.038  -0.793 "C4'"  YLP 21 
YLP "O4'"  "O4'"  O 0 1 N N N 40.099 130.128 -8.939  -3.033 0.635  -0.554 "O4'"  YLP 22 
YLP "C5'"  "C5'"  C 0 1 N N N 42.326 131.127 -9.105  -2.290 2.856  0.091  "C5'"  YLP 23 
YLP "O5'"  "O5'"  O 0 1 N N N 42.065 131.170 -10.497 -0.940 2.640  -0.326 "O5'"  YLP 24 
YLP OAD    OAD    O 0 1 N N N 44.575 140.520 -6.525  9.344  -2.758 -1.171 OAD    YLP 25 
YLP OAF    OAF    O 0 1 N N N 44.132 130.034 -11.359 0.244  4.937  0.155  OAF    YLP 26 
YLP OAI    OAI    O 0 1 N N N 42.739 131.678 -12.817 0.296  3.054  1.835  OAI    YLP 27 
YLP CAM    CAM    C 0 1 N N N 45.013 136.851 -7.723  5.980  -0.668 0.199  CAM    YLP 28 
YLP CAN    CAN    C 0 1 N N N 45.854 135.820 -8.484  5.702  0.735  -0.343 CAN    YLP 29 
YLP CAO    CAO    C 0 1 N N N 45.819 138.044 -7.228  7.253  -1.222 -0.445 CAO    YLP 30 
YLP NAW    NAW    N 0 1 N N N 45.627 139.231 -8.060  7.519  -2.565 0.074  NAW    YLP 31 
YLP OAY    OAY    O 0 1 N N N 44.116 132.534 -10.954 1.684  2.776  -0.254 OAY    YLP 32 
YLP CBA    CBA    C 0 1 N N N 45.055 140.378 -7.644  8.596  -3.253 -0.355 CBA    YLP 33 
YLP CBF    CBF    C 0 1 N N N 44.762 142.868 -8.026  10.142 -5.188 -0.466 CBF    YLP 34 
YLP CBK    CBK    C 0 1 N N N 45.058 141.522 -8.653  8.869  -4.635 0.179  CBK    YLP 35 
YLP PBN    PBN    P 0 1 N N N 43.285 131.269 -11.511 0.321  3.346  0.384  PBN    YLP 36 
YLP HN     HN     H 0 1 N N N 42.979 136.077 -8.591  5.101  4.519  -0.219 HN     YLP 37 
YLP HNA    HNA    H 0 1 N N N 42.057 135.686 -9.881  5.288  3.649  1.186  HNA    YLP 38 
YLP H2     H2     H 0 1 N N N 35.435 125.797 -9.754  -7.766 -3.770 -1.664 H2     YLP 39 
YLP HN6    HN6    H 0 1 N N N 35.810 126.365 -14.162 -5.804 -6.388 1.513  HN6    YLP 40 
YLP HN6A   HN6A   H 0 0 N N N 36.446 127.865 -14.268 -4.532 -5.485 2.139  HN6A   YLP 41 
YLP H8     H8     H 0 1 N N N 40.390 129.653 -11.532 -2.662 -1.097 1.368  H8     YLP 42 
YLP HA     HA     H 0 1 N N N 44.294 135.841 -10.570 4.108  2.659  -1.329 HA     YLP 43 
YLP HB     HB     H 0 1 N N N 44.596 134.101 -8.122  4.562  1.336  1.383  HB     YLP 44 
YLP HBA    HBA    H 0 1 N N N 45.751 133.907 -9.483  3.590  0.635  0.067  HBA    YLP 45 
YLP "H1'"  "H1'"  H 0 1 N N N 38.686 128.785 -8.217  -4.569 -0.137 -1.751 "H1'"  YLP 46 
YLP "H2'"  "H2'"  H 0 1 N N N 40.577 126.938 -8.975  -5.291 0.872  1.058  "H2'"  YLP 47 
YLP "HO2'" "HO2'" H 0 0 N N N 41.146 127.181 -6.704  -7.267 1.441  -0.156 "HO2'" YLP 48 
YLP "H3'"  "H3'"  H 0 1 N N N 42.125 128.552 -9.846  -4.743 3.060  0.400  "H3'"  YLP 49 
YLP "HO3'" "HO3'" H 0 0 N N N 43.754 128.766 -8.204  -6.326 3.055  -1.416 "HO3'" YLP 50 
YLP "H4'"  "H4'"  H 0 1 N N N 41.471 130.201 -7.376  -3.051 2.265  -1.843 "H4'"  YLP 51 
YLP "H5'"  "H5'"  H 0 1 N N N 42.098 132.105 -8.657  -2.533 3.915  -0.000 "H5'"  YLP 52 
YLP "H5'A" "H5'A" H 0 0 N N N 43.386 130.885 -8.936  -2.403 2.545  1.129  "H5'A" YLP 53 
YLP HAM    HAM    H 0 1 N N N 44.222 137.219 -8.393  6.112  -0.621 1.281  HAM    YLP 54 
YLP HAMA   HAMA   H 0 0 N N N 44.556 136.355 -6.854  5.140  -1.322 -0.036 HAMA   YLP 55 
YLP HAN    HAN    H 0 1 N N N 46.648 135.460 -7.813  5.570  0.688  -1.424 HAN    YLP 56 
YLP HANA   HANA   H 0 0 N N N 46.307 136.319 -9.354  6.542  1.388  -0.107 HANA   YLP 57 
YLP HAO    HAO    H 0 1 N N N 45.507 138.279 -6.200  7.121  -1.269 -1.526 HAO    YLP 58 
YLP HAOA   HAOA   H 0 0 N N N 46.886 137.777 -7.235  8.093  -0.568 -0.210 HAOA   YLP 59 
YLP HNAW   HNAW   H 0 0 N N N 45.944 139.188 -9.008  6.920  -2.960 0.726  HNAW   YLP 60 
YLP HBF    HBF    H 0 1 N N N 44.779 143.647 -8.803  10.010 -5.236 -1.547 HBF    YLP 61 
YLP HBFA   HBFA   H 0 0 N N N 43.769 142.842 -7.554  10.982 -4.535 -0.231 HBFA   YLP 62 
YLP HBFB   HBFB   H 0 0 N N N 45.523 143.093 -7.265  10.340 -6.188 -0.080 HBFB   YLP 63 
YLP HBK    HBK    H 0 1 N N N 46.049 141.567 -9.128  9.001  -4.587 1.260  HBK    YLP 64 
YLP HBKA   HBKA   H 0 0 N N N 44.294 141.316 -9.418  8.029  -5.288 -0.057 HBKA   YLP 65 
YLP HAF    HAF    H 0 1 N N N 44.232 129.612 -12.204 0.256  5.202  -0.775 HAF    YLP 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLP C     O      DOUB N N 1  
YLP C     CA     SING N N 2  
YLP C     OAY    SING N N 3  
YLP N     CA     SING N N 4  
YLP N1    C2     DOUB Y N 5  
YLP N1    C6     SING Y N 6  
YLP C2    N3     SING Y N 7  
YLP N3    C4     DOUB Y N 8  
YLP C4    C5     SING Y N 9  
YLP C4    N9     SING Y N 10 
YLP C5    C6     DOUB Y N 11 
YLP C5    N7     SING Y N 12 
YLP C6    N6     SING N N 13 
YLP N7    C8     DOUB Y N 14 
YLP C8    N9     SING Y N 15 
YLP N9    "C1'"  SING N N 16 
YLP CA    CB     SING N N 17 
YLP CB    CAN    SING N N 18 
YLP "C1'" "C2'"  SING N N 19 
YLP "C1'" "O4'"  SING N N 20 
YLP "C2'" "O2'"  SING N N 21 
YLP "C2'" "C3'"  SING N N 22 
YLP "C3'" "O3'"  SING N N 23 
YLP "C3'" "C4'"  SING N N 24 
YLP "C4'" "O4'"  SING N N 25 
YLP "C4'" "C5'"  SING N N 26 
YLP "C5'" "O5'"  SING N N 27 
YLP "O5'" PBN    SING N N 28 
YLP OAD   CBA    DOUB N N 29 
YLP OAF   PBN    SING N N 30 
YLP OAI   PBN    DOUB N N 31 
YLP CAM   CAN    SING N N 32 
YLP CAM   CAO    SING N N 33 
YLP CAO   NAW    SING N N 34 
YLP NAW   CBA    SING N N 35 
YLP OAY   PBN    SING N N 36 
YLP CBA   CBK    SING N N 37 
YLP CBF   CBK    SING N N 38 
YLP N     HN     SING N N 39 
YLP N     HNA    SING N N 40 
YLP C2    H2     SING N N 41 
YLP N6    HN6    SING N N 42 
YLP N6    HN6A   SING N N 43 
YLP C8    H8     SING N N 44 
YLP CA    HA     SING N N 45 
YLP CB    HB     SING N N 46 
YLP CB    HBA    SING N N 47 
YLP "C1'" "H1'"  SING N N 48 
YLP "C2'" "H2'"  SING N N 49 
YLP "O2'" "HO2'" SING N N 50 
YLP "C3'" "H3'"  SING N N 51 
YLP "O3'" "HO3'" SING N N 52 
YLP "C4'" "H4'"  SING N N 53 
YLP "C5'" "H5'"  SING N N 54 
YLP "C5'" "H5'A" SING N N 55 
YLP CAM   HAM    SING N N 56 
YLP CAM   HAMA   SING N N 57 
YLP CAN   HAN    SING N N 58 
YLP CAN   HANA   SING N N 59 
YLP CAO   HAO    SING N N 60 
YLP CAO   HAOA   SING N N 61 
YLP NAW   HNAW   SING N N 62 
YLP CBF   HBF    SING N N 63 
YLP CBF   HBFA   SING N N 64 
YLP CBF   HBFB   SING N N 65 
YLP CBK   HBK    SING N N 66 
YLP CBK   HBKA   SING N N 67 
YLP OAF   HAF    SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLP SMILES           ACDLabs              12.01 "O=C(NCCCCC(N)C(=O)OP([O-])(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)CC" 
YLP InChI            InChI                1.03  
"InChI=1S/C19H30N7O9P/c1-2-12(27)22-6-4-3-5-10(20)19(30)35-36(31,32)33-7-11-14(28)15(29)18(34-11)26-9-25-13-16(21)23-8-24-17(13)26/h8-11,14-15,18,28-29H,2-7,20H2,1H3,(H,22,27)(H,31,32)(H2,21,23,24)/p-1/t10-,11+,14+,15+,18+/m0/s1" 
YLP InChIKey         InChI                1.03  DOJLWXPRSAYJFD-MBRXSIFGSA-M 
YLP SMILES_CANONICAL CACTVS               3.385 "CCC(=O)NCCCC[C@H](N)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
YLP SMILES           CACTVS               3.385 "CCC(=O)NCCCC[CH](N)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
YLP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(=O)NCCCC[C@@H](C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" 
YLP SMILES           "OpenEye OEToolkits" 1.7.6 "CCC(=O)NCCCCC(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLP "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-({[(2S)-2-amino-6-(propanoylamino)hexanoyl]oxy}phosphinato)adenosine"                                                                 
YLP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S)-2-azanyl-6-(propanoylamino)hexanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLP "Create component" 2013-11-28 EBI  
YLP "Initial release"  2014-03-19 RCSB 
# 
