data_YSP
#

_chem_comp.id                                   YSP
_chem_comp.name                                 "5-(3-{3-chloro-5-[(2-methylphenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H21 Cl N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-30
_chem_comp.pdbx_modified_date                   2021-06-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       512.944
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YSP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M8N
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YSP  C7   C1   C   0  1  N  N  N  -21.271  -4.392  -25.884  -3.424  -1.009   0.188  C7   YSP   1  
YSP  C6   C2   C   0  1  Y  N  N  -18.395  -5.854  -26.063  -2.562  -4.116   0.570  C6   YSP   2  
YSP  C1   C3   C   0  1  N  N  N  -20.487  -4.159  -28.187  -1.229  -1.396  -0.573  C1   YSP   3  
YSP  C2   C4   C   0  1  Y  N  N  -18.858  -4.635  -26.444  -2.761  -3.203  -0.463  C2   YSP   4  
YSP  C4   C5   C   0  1  Y  N  N  -16.266  -4.840  -25.732  -3.372  -5.821  -0.892  C4   YSP   5  
YSP  C5   C6   C   0  1  Y  N  N  -17.090  -5.960  -25.708  -2.872  -5.446   0.342  C5   YSP   6  
YSP  C10  C7   C   0  1  N  N  N  -23.554  -3.559  -23.887  -4.672   2.384   0.117  C10  YSP   7  
YSP  C11  C8   C   0  1  N  N  N  -24.881  -4.831  -25.606  -4.789   1.006   2.117  C11  YSP   8  
YSP  C16  C9   C   0  1  Y  N  N  -21.686  -4.476  -31.195   1.547   0.030   0.017  C16  YSP   9  
YSP  C17  C10  C   0  1  Y  N  N  -21.970  -4.170  -32.445   2.814   0.497  -0.291  C17  YSP  10  
YSP  C21  C11  C   0  1  N  N  N  -19.114  -3.923  -35.341   7.931   1.346  -0.308  C21  YSP  11  
YSP  C22  C12  C   0  1  Y  N  N  -19.121  -6.008  -36.959   8.525  -0.166   1.597  C22  YSP  12  
YSP  C23  C13  C   0  1  Y  N  N  -19.377  -7.282  -37.184   8.176  -1.057   2.593  C23  YSP  13  
YSP  C20  C14  C   0  1  Y  N  N  -19.407  -5.402  -35.594   7.551   0.369   0.775  C20  YSP  14  
YSP  C24  C15  C   0  1  Y  N  N  -19.959  -8.149  -36.083   6.852  -1.414   2.768  C24  YSP  15  
YSP  C25  C16  C   0  1  Y  N  N  -20.209  -7.623  -34.887   5.877  -0.879   1.947  C25  YSP  16  
YSP  C26  C17  C   0  1  Y  N  N  -22.804  -2.951  -32.779   2.987   1.403  -1.329  C26  YSP  17  
YSP  C27  C18  C   0  1  Y  N  N  -23.236  -2.194  -31.793   1.897   1.842  -2.059  C27  YSP  18  
YSP  C28  C19  C   0  1  Y  N  N  -22.911  -2.535  -30.354   0.630   1.381  -1.758  C28  YSP  19  
YSP  C12  C20  C   0  1  N  N  N  -25.834  -4.334  -23.322  -6.162   2.909   1.839  C12  YSP  20  
YSP  C13  C21  C   0  1  N  N  N  -22.907  -3.876  -27.680  -1.878   0.834   0.087  C13  YSP  21  
YSP  C14  C22  C   0  1  N  N  N  -21.875  -3.890  -28.619  -0.909  -0.029  -0.396  C14  YSP  22  
YSP  C15  C23  C   0  1  Y  N  N  -22.192  -3.597  -30.074   0.448   0.471  -0.717  C15  YSP  23  
YSP  C18  C24  C   0  1  N  N  N  -20.220  -5.542  -33.275   5.165   0.592   0.050  C18  YSP  24  
YSP  C19  C25  C   0  1  Y  N  N  -19.905  -6.159  -34.630   6.228   0.009   0.946  C19  YSP  25  
YSP  C3   C26  C   0  1  Y  N  N  -18.034  -3.523  -26.466  -3.261  -3.658  -1.676  C3   YSP  26  
YSP  C8   C27  C   0  1  N  N  N  -22.605  -4.126  -26.301  -3.158   0.326   0.383  C8   YSP  27  
YSP  C9   C28  C   0  1  N  N  N  -23.711  -4.157  -25.268  -4.216   1.229   0.902  C9   YSP  28  
YSP  N1   N1   N   0  1  N  N  N  -20.220  -4.409  -26.842  -2.463  -1.847  -0.281  N1   YSP  29  
YSP  N2   N2   N   0  1  Y  N  N  -16.748  -3.635  -26.099  -3.544  -4.933  -1.851  N2   YSP  30  
YSP  N3   N3   N   0  1  N  N  N  -24.628  -3.653  -22.951  -5.633   3.178   0.632  N3   YSP  31  
YSP  N4   N4   N   0  1  N  N  N  -25.971  -4.928  -24.645  -5.762   1.855   2.568  N4   YSP  32  
YSP  O1   O1   O   0  1  N  N  N  -19.431  -4.186  -29.100  -0.383  -2.169  -0.993  O1   YSP  33  
YSP  O2   O2   O   0  1  N  N  N  -22.382  -2.910  -23.534  -4.188   2.622  -0.974  O2   YSP  34  
YSP  O3   O3   O   0  1  N  N  N  -26.888  -4.444  -22.427  -7.027   3.640   2.282  O3   YSP  35  
YSP  O4   O4   O   0  1  N  N  N  -21.494  -4.970  -33.477   3.888   0.069   0.423  O4   YSP  36  
YSP  CL1  CL1  CL  0  0  N  N  N  -24.230  -0.771  -32.134   2.122   2.974  -3.355  CL1  YSP  37  
YSP  H5   H1   H   0  1  N  N  N  -21.057  -4.581  -24.842  -4.406  -1.397   0.416  H5   YSP  38  
YSP  H4   H2   H   0  1  N  N  N  -19.047  -6.714  -26.043  -2.170  -3.795   1.524  H4   YSP  39  
YSP  H2   H3   H   0  1  N  N  N  -15.227  -4.936  -25.453  -3.615  -6.857  -1.075  H2   YSP  40  
YSP  H3   H4   H   0  1  N  N  N  -16.690  -6.917  -25.406  -2.725  -6.183   1.118  H3   YSP  41  
YSP  H7   H5   H   0  1  N  N  N  -24.981  -5.283  -26.582  -4.478   0.166   2.720  H7   YSP  42  
YSP  H10  H6   H   0  1  N  N  N  -21.094  -5.351  -30.972   1.412  -0.678   0.821  H10  YSP  43  
YSP  H13  H7   H   0  1  N  N  N  -20.004  -3.325  -35.588   8.150   0.803  -1.227  H13  YSP  44  
YSP  H14  H8   H   0  1  N  N  N  -18.856  -3.776  -34.282   7.105   2.036  -0.482  H14  YSP  45  
YSP  H15  H9   H   0  1  N  N  N  -18.271  -3.603  -35.971   8.813   1.906   0.002  H15  YSP  46  
YSP  H16  H10  H   0  1  N  N  N  -18.708  -5.394  -37.746   9.559   0.116   1.463  H16  YSP  47  
YSP  H17  H11  H   0  1  N  N  N  -19.172  -7.709  -38.154   8.937  -1.475   3.235  H17  YSP  48  
YSP  H18  H12  H   0  1  N  N  N  -20.170  -9.192  -36.270   6.578  -2.111   3.547  H18  YSP  49  
YSP  H19  H13  H   0  1  N  N  N  -20.627  -8.236  -34.102   4.843  -1.157   2.084  H19  YSP  50  
YSP  H20  H14  H   0  1  N  N  N  -23.039  -2.708  -33.805   3.976   1.766  -1.567  H20  YSP  51  
YSP  H21  H15  H   0  1  N  N  N  -23.272  -1.903  -29.556  -0.220   1.726  -2.329  H21  YSP  52  
YSP  H9   H16  H   0  1  N  N  N  -23.923  -3.679  -27.989  -1.655   1.881   0.235  H9   YSP  53  
YSP  H11  H17  H   0  1  N  N  N  -20.251  -6.310  -32.488   5.158   1.677   0.154  H11  YSP  54  
YSP  H12  H18  H   0  1  N  N  N  -19.479  -4.774  -33.008   5.378   0.328  -0.985  H12  YSP  55  
YSP  H1   H19  H   0  1  N  N  N  -18.426  -2.566  -26.778  -3.420  -2.959  -2.484  H1   YSP  56  
YSP  H6   H20  H   0  1  N  N  N  -24.540  -3.246  -22.042  -5.944   3.948   0.130  H6   YSP  57  
YSP  H8   H21  H   0  1  N  N  N  -26.815  -5.403  -24.894  -6.169   1.694   3.434  H8   YSP  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YSP  C23  C22  DOUB  Y  N   1  
YSP  C23  C24  SING  Y  N   2  
YSP  C22  C20  SING  Y  N   3  
YSP  C24  C25  DOUB  Y  N   4  
YSP  C20  C21  SING  N  N   5  
YSP  C20  C19  DOUB  Y  N   6  
YSP  C25  C19  SING  Y  N   7  
YSP  C19  C18  SING  N  N   8  
YSP  O4   C18  SING  N  N   9  
YSP  O4   C17  SING  N  N  10  
YSP  C26  C17  DOUB  Y  N  11  
YSP  C26  C27  SING  Y  N  12  
YSP  C17  C16  SING  Y  N  13  
YSP  CL1  C27  SING  N  N  14  
YSP  C27  C28  DOUB  Y  N  15  
YSP  C16  C15  DOUB  Y  N  16  
YSP  C28  C15  SING  Y  N  17  
YSP  C15  C14  SING  N  N  18  
YSP  O1   C1   DOUB  N  N  19  
YSP  C14  C1   SING  N  N  20  
YSP  C14  C13  DOUB  N  N  21  
YSP  C1   N1   SING  N  N  22  
YSP  C13  C8   SING  N  N  23  
YSP  N1   C2   SING  N  N  24  
YSP  N1   C7   SING  N  N  25  
YSP  C3   C2   DOUB  Y  N  26  
YSP  C3   N2   SING  Y  N  27  
YSP  C2   C6   SING  Y  N  28  
YSP  C8   C7   DOUB  N  N  29  
YSP  C8   C9   SING  N  N  30  
YSP  N2   C4   DOUB  Y  N  31  
YSP  C6   C5   DOUB  Y  N  32  
YSP  C4   C5   SING  Y  N  33  
YSP  C11  C9   DOUB  N  N  34  
YSP  C11  N4   SING  N  N  35  
YSP  C9   C10  SING  N  N  36  
YSP  N4   C12  SING  N  N  37  
YSP  C10  O2   DOUB  N  N  38  
YSP  C10  N3   SING  N  N  39  
YSP  C12  N3   SING  N  N  40  
YSP  C12  O3   DOUB  N  N  41  
YSP  C7   H5   SING  N  N  42  
YSP  C6   H4   SING  N  N  43  
YSP  C4   H2   SING  N  N  44  
YSP  C5   H3   SING  N  N  45  
YSP  C11  H7   SING  N  N  46  
YSP  C16  H10  SING  N  N  47  
YSP  C21  H13  SING  N  N  48  
YSP  C21  H14  SING  N  N  49  
YSP  C21  H15  SING  N  N  50  
YSP  C22  H16  SING  N  N  51  
YSP  C23  H17  SING  N  N  52  
YSP  C24  H18  SING  N  N  53  
YSP  C25  H19  SING  N  N  54  
YSP  C26  H20  SING  N  N  55  
YSP  C28  H21  SING  N  N  56  
YSP  C13  H9   SING  N  N  57  
YSP  C18  H11  SING  N  N  58  
YSP  C18  H12  SING  N  N  59  
YSP  C3   H1   SING  N  N  60  
YSP  N3   H6   SING  N  N  61  
YSP  N4   H8   SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YSP  SMILES            ACDLabs               12.01  "Cc1ccccc1COc1cc(cc(Cl)c1)C1=CC(=CN(c2cnccc2)C1=O)C1=CNC(=O)NC1=O"  
YSP  InChI             InChI                 1.03   "InChI=1S/C28H21ClN4O4/c1-17-5-2-3-6-18(17)16-37-23-10-19(9-21(29)12-23)24-11-20(25-14-31-28(36)32-26(25)34)15-33(27(24)35)22-7-4-8-30-13-22/h2-15H,16H2,1H3,(H2,31,32,34,36)"  
YSP  InChIKey          InChI                 1.03   CXKRCAINPQDWER-UHFFFAOYSA-N  
YSP  SMILES_CANONICAL  CACTVS                3.385  "Cc1ccccc1COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
YSP  SMILES            CACTVS                3.385  "Cc1ccccc1COc2cc(Cl)cc(c2)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
YSP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1ccccc1COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
YSP  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1ccccc1COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YSP  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-(3-{3-chloro-5-[(2-methylphenyl)methoxy]phenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl)pyrimidine-2,4(1H,3H)-dione"  
YSP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[5-[3-chloranyl-5-[(2-methylphenyl)methoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YSP  "Create component"  2021-03-30  RCSB  
YSP  "Initial release"   2021-06-30  RCSB  
##
