data_ZDP
# 
_chem_comp.id                                    ZDP 
_chem_comp.name                                  "(2S,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H16 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-04-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        204.224 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZDP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2GKE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZDP OAE  OAE  O 0 1 N N N N N N 21.913 18.911 7.402  4.272  1.398  -0.830 OAE  ZDP 1  
ZDP CAP  CAP  C 0 1 N N N N N N 21.882 17.944 6.600  3.912  0.369  -0.047 CAP  ZDP 2  
ZDP OAG  OAG  O 0 1 N N N N N N 21.703 18.132 5.371  4.596  0.062  0.900  OAG  ZDP 3  
ZDP CAS  CAS  C 0 1 N N S N N N 22.085 16.561 7.119  2.655  -0.405 -0.352 CAS  ZDP 4  
ZDP NAB  NAB  N 0 1 N N N N N N 21.611 15.591 6.129  2.718  -1.719 0.302  NAB  ZDP 5  
ZDP CAK  CAK  C 0 1 N N N N N N 23.592 16.361 7.386  1.442  0.367  0.171  CAK  ZDP 6  
ZDP CAJ  CAJ  C 0 1 N N N N N N 23.940 14.972 7.954  0.159  -0.355 -0.246 CAJ  ZDP 7  
ZDP CAM  CAM  C 0 1 N N N N N N 23.530 14.823 9.424  -1.054 0.416  0.277  CAM  ZDP 8  
ZDP CAT  CAT  C 0 1 N N S N N N 23.913 13.469 10.045 -2.337 -0.306 -0.140 CAT  ZDP 9  
ZDP NAC  NAC  N 0 1 N N N N N N 22.883 12.438 9.708  -2.343 -0.490 -1.597 NAC  ZDP 10 
ZDP CAQ  CAQ  C 0 1 N N N N N N 23.956 13.563 11.563 -3.532 0.517  0.268  CAQ  ZDP 11 
ZDP OAH  OAH  O 0 1 N N N N N N 24.172 12.498 12.173 -4.694 0.383  -0.389 OAH  ZDP 12 
ZDP OAF  OAF  O 0 1 N N N N N N 23.757 14.674 12.158 -3.443 1.296  1.187  OAF  ZDP 13 
ZDP CAN  CAN  C 0 1 N N N N N N 25.216 12.943 9.410  -2.399 -1.672 0.547  CAN  ZDP 14 
ZDP HOAE HOAE H 0 0 N N N N N N 21.785 19.723 6.925  5.086  1.864  -0.595 HOAE ZDP 15 
ZDP HAS  HAS  H 0 1 N N N N N N 21.519 16.412 8.051  2.563  -0.540 -1.429 HAS  ZDP 16 
ZDP HAB1 1HAB H 0 0 N N N N N N 21.503 16.043 5.244  2.804  -1.621 1.303  HAB1 ZDP 17 
ZDP HAB2 2HAB H 0 0 N N N N N N 22.276 14.849 6.045  1.916  -2.282 0.062  HAB2 ZDP 18 
ZDP HAK1 1HAK H 0 0 N N N N N N 24.127 16.484 6.433  1.489  0.424  1.259  HAK1 ZDP 19 
ZDP HAK2 2HAK H 0 0 N N N N N N 23.889 17.104 8.141  1.444  1.374  -0.246 HAK2 ZDP 20 
ZDP HAJ1 1HAJ H 0 0 N N N N N N 23.409 14.210 7.364  0.112  -0.413 -1.333 HAJ1 ZDP 21 
ZDP HAJ2 2HAJ H 0 0 N N N N N N 25.031 14.847 7.894  0.157  -1.362 0.172  HAJ2 ZDP 22 
ZDP HAM1 1HAM H 0 0 N N N N N N 24.032 15.615 9.999  -1.007 0.474  1.365  HAM1 ZDP 23 
ZDP HAM2 2HAM H 0 0 N N N N N N 22.433 14.894 9.460  -1.052 1.423  -0.140 HAM2 ZDP 24 
ZDP HAC1 1HAC H 0 0 N N N N N N 22.653 12.501 8.737  -2.303 0.399  -2.074 HAC1 ZDP 25 
ZDP HAC2 2HAC H 0 0 N N N N N N 23.246 11.527 9.906  -1.588 -1.092 -1.889 HAC2 ZDP 26 
ZDP HOAH HOAH H 0 0 N N N N N N 24.161 12.661 13.109 -5.433 0.932  -0.091 HOAH ZDP 27 
ZDP HAN1 1HAN H 0 0 N N N N N N 25.072 12.818 8.327  -2.394 -1.535 1.628  HAN1 ZDP 28 
ZDP HAN2 2HAN H 0 0 N N N N N N 26.028 13.662 9.591  -3.313 -2.186 0.250  HAN2 ZDP 29 
ZDP HAN3 3HAN H 0 0 N N N N N N 25.477 11.974 9.859  -1.535 -2.267 0.252  HAN3 ZDP 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZDP OAE CAP  SING N N 1  
ZDP OAE HOAE SING N N 2  
ZDP CAP OAG  DOUB N N 3  
ZDP CAP CAS  SING N N 4  
ZDP CAS NAB  SING N N 5  
ZDP CAS CAK  SING N N 6  
ZDP CAS HAS  SING N N 7  
ZDP NAB HAB1 SING N N 8  
ZDP NAB HAB2 SING N N 9  
ZDP CAK CAJ  SING N N 10 
ZDP CAK HAK1 SING N N 11 
ZDP CAK HAK2 SING N N 12 
ZDP CAJ CAM  SING N N 13 
ZDP CAJ HAJ1 SING N N 14 
ZDP CAJ HAJ2 SING N N 15 
ZDP CAM CAT  SING N N 16 
ZDP CAM HAM1 SING N N 17 
ZDP CAM HAM2 SING N N 18 
ZDP CAT NAC  SING N N 19 
ZDP CAT CAQ  SING N N 20 
ZDP CAT CAN  SING N N 21 
ZDP NAC HAC1 SING N N 22 
ZDP NAC HAC2 SING N N 23 
ZDP CAQ OAH  SING N N 24 
ZDP CAQ OAF  DOUB N N 25 
ZDP OAH HOAH SING N N 26 
ZDP CAN HAN1 SING N N 27 
ZDP CAN HAN2 SING N N 28 
ZDP CAN HAN3 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZDP SMILES           ACDLabs              10.04 "O=C(O)C(N)(CCCC(N)C(=O)O)C"                                                                              
ZDP InChI            InChI                1.03  "InChI=1S/C8H16N2O4/c1-8(10,7(13)14)4-2-3-5(9)6(11)12/h5H,2-4,9-10H2,1H3,(H,11,12)(H,13,14)/t5-,8-/m0/s1" 
ZDP InChIKey         InChI                1.03  TVZGBXIJPFGQBJ-XNCJUZBTSA-N                                                                               
ZDP SMILES_CANONICAL CACTVS               3.385 "C[C@](N)(CCC[C@H](N)C(O)=O)C(O)=O"                                                                       
ZDP SMILES           CACTVS               3.385 "C[C](N)(CCC[CH](N)C(O)=O)C(O)=O"                                                                         
ZDP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C[C@](CCC[C@@H](C(=O)O)N)(C(=O)O)N"                                                                      
ZDP SMILES           "OpenEye OEToolkits" 1.7.5 "CC(CCCC(C(=O)O)N)(C(=O)O)N"                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZDP "SYSTEMATIC NAME" ACDLabs              10.04 "(2S,6S)-2,6-diamino-2-methylheptanedioic acid"  
ZDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,6S)-2,6-diamino-2-methyl-heptanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZDP "Create component"   2006-04-13 EBI  
ZDP "Modify descriptor"  2011-06-04 RCSB 
ZDP "Modify descriptor"  2012-01-05 RCSB 
ZDP "Modify coordinates" 2012-01-05 RCSB 
ZDP "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ZDP 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAN 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
