data_ZGP
# 
_chem_comp.id                                    ZGP 
_chem_comp.name                                  "5'-O-[(R)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxo-2-sulfanylethyl)pyridin-4-yl]oxy}phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H23 N6 O10 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-05-23 
_chem_comp.pdbx_modified_date                    2015-04-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        558.459 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZGP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3WVC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZGP O6    O6    O 0 1 N N N -1.413 9.105  1.915  -7.211  -3.973 -0.333 O6    ZGP 1  
ZGP C6    C6    C 0 1 N N N -0.321 8.870  1.393  -7.097  -2.760 -0.398 C6    ZGP 2  
ZGP N1    N1    N 0 1 N N N -0.041 9.415  0.121  -8.169  -1.977 -0.652 N1    ZGP 3  
ZGP C2    C2    C 0 1 N N N 1.206  9.140  -0.478 -8.030  -0.623 -0.723 C2    ZGP 4  
ZGP N2    N2    N 0 1 N N N 1.526  9.619  -1.675 -9.136  0.147  -0.982 N2    ZGP 5  
ZGP N3    N3    N 0 1 N N N 2.084  8.375  0.174  -6.868  -0.034 -0.549 N3    ZGP 6  
ZGP C4    C4    C 0 1 Y N N 1.790  7.873  1.395  -5.764  -0.744 -0.293 C4    ZGP 7  
ZGP C5    C5    C 0 1 Y N N 0.614  8.107  2.002  -5.842  -2.139 -0.203 C5    ZGP 8  
ZGP N7    N7    N 0 1 Y N N 0.652  7.459  3.181  -4.595  -2.595 0.068  N7    ZGP 9  
ZGP C8    C8    C 0 1 Y N N 1.829  6.839  3.314  -3.776  -1.587 0.152  C8    ZGP 10 
ZGP N9    N9    N 0 1 Y N N 2.515  7.097  2.202  -4.452  -0.422 -0.073 N9    ZGP 11 
ZGP "C1'" "C1'" C 0 1 N N R 3.861  6.695  1.742  -3.881  0.927  -0.063 "C1'" ZGP 12 
ZGP "O4'" "O4'" O 0 1 N N N 4.372  5.587  2.517  -2.449  0.874  -0.244 "O4'" ZGP 13 
ZGP "C2'" "C2'" C 0 1 N N R 4.835  7.854  1.866  -4.045  1.578  1.334  "C2'" ZGP 14 
ZGP "O2'" "O2'" O 0 1 N N N 5.602  7.847  0.693  -5.315  2.223  1.450  "O2'" ZGP 15 
ZGP "C3'" "C3'" C 0 1 N N S 5.674  7.492  3.076  -2.896  2.616  1.344  "C3'" ZGP 16 
ZGP "O3'" "O3'" O 0 1 N N N 7.013  7.966  2.996  -3.390  3.912  0.998  "O3'" ZGP 17 
ZGP "C4'" "C4'" C 0 1 N N R 5.702  5.969  3.028  -1.916  2.105  0.271  "C4'" ZGP 18 
ZGP "C5'" "C5'" C 0 1 N N N 6.001  5.477  4.458  -0.542  1.855  0.898  "C5'" ZGP 19 
ZGP "O5'" "O5'" O 0 1 N N N 5.172  6.136  5.382  0.385   1.478  -0.122 "O5'" ZGP 20 
ZGP PBK   PBK   P 0 1 N N N 5.846  6.837  6.589  1.930   1.138  0.180  PBK   ZGP 21 
ZGP OAJ   OAJ   O 0 1 N N N 4.786  7.934  6.995  2.020   -0.183 1.096  OAJ   ZGP 22 
ZGP OAG   OAG   O 0 1 N N N 7.222  7.266  6.239  2.555   2.275  0.892  OAG   ZGP 23 
ZGP OAT   OAT   O 0 1 N N N 5.784  5.750  7.803  2.704   0.883  -1.208 OAT   ZGP 24 
ZGP CBA   CBA   C 0 1 Y N N 6.250  4.483  7.674  4.043   0.708  -1.069 CBA   ZGP 25 
ZGP CAX   CAX   C 0 1 Y N N 7.589  4.244  8.026  4.590   -0.571 -0.974 CAX   ZGP 26 
ZGP CAA   CAA   C 0 1 N N N 8.411  5.336  8.468  3.700   -1.786 -1.023 CAA   ZGP 27 
ZGP CAY   CAY   C 0 1 Y N N 5.395  3.489  7.228  4.903   1.799  -1.025 CAY   ZGP 28 
ZGP CAB   CAB   C 0 1 N N N 4.090  3.765  6.939  4.364   3.202  -1.130 CAB   ZGP 29 
ZGP CBB   CBB   C 0 1 Y N N 5.892  2.180  7.136  6.265   1.578  -0.882 CBB   ZGP 30 
ZGP OAE   OAE   O 0 1 N N N 5.192  1.217  6.772  7.115   2.634  -0.836 OAE   ZGP 31 
ZGP NAR   NAR   N 0 1 Y N N 7.251  1.921  7.464  6.743   0.347  -0.789 NAR   ZGP 32 
ZGP CAZ   CAZ   C 0 1 Y N N 8.096  2.940  7.880  5.954   -0.711 -0.833 CAZ   ZGP 33 
ZGP CAM   CAM   C 0 1 N N N 9.417  2.658  8.262  6.553   -2.089 -0.723 CAM   ZGP 34 
ZGP CAV   CAV   C 0 1 N N N 9.251  2.496  9.837  6.606   -2.499 0.727  CAV   ZGP 35 
ZGP OAD   OAD   O 0 1 N N N 8.662  1.519  10.271 6.198   -1.746 1.585  OAD   ZGP 36 
ZGP SAK   SAK   S 0 1 N N N 9.638  3.977  10.864 7.242   -4.028 1.161  SAK   ZGP 37 
ZGP H1    H1    H 0 1 N N N -0.715 9.986  -0.347 -9.041  -2.380 -0.786 H1    ZGP 38 
ZGP H2    H2    H 0 1 N N N 2.416  9.405  -2.077 -10.000 -0.273 -1.113 H2    ZGP 39 
ZGP H3    H3    H 0 1 N N N 0.877  10.193 -2.174 -9.053  1.112  -1.036 H3    ZGP 40 
ZGP H4    H4    H 0 1 N N N 2.158  6.247  4.155  -2.719  -1.661 0.358  H4    ZGP 41 
ZGP H5    H5    H 0 1 N N N 3.803  6.403  0.683  -4.345  1.544  -0.832 H5    ZGP 42 
ZGP H6    H6    H 0 1 N N N 4.302  8.803  2.024  -3.910  0.841  2.125  H6    ZGP 43 
ZGP H7    H7    H 0 1 N N N 6.231  8.558  0.721  -5.465  2.645  2.307  H7    ZGP 44 
ZGP H8    H8    H 0 1 N N N 5.179  7.832  3.997  -2.414  2.641  2.321  H8    ZGP 45 
ZGP H9    H9    H 0 1 N N N 7.487  7.710  3.778  -4.054  4.256  1.611  H9    ZGP 46 
ZGP H10   H10   H 0 1 N N N 6.494  5.629  2.344  -1.831  2.837  -0.532 H10   ZGP 47 
ZGP H11   H11   H 0 1 N N N 5.819  4.394  4.515  -0.195  2.766  1.387  H11   ZGP 48 
ZGP H12   H12   H 0 1 N N N 7.053  5.685  4.701  -0.619  1.055  1.634  H12   ZGP 49 
ZGP H13   H13   H 0 1 N N N 5.190  8.793  6.962  1.548   -0.946 0.733  H13   ZGP 50 
ZGP H15   H15   H 0 1 N N N 8.349  5.422  9.563  3.537   -2.075 -2.062 H15   ZGP 51 
ZGP H16   H16   H 0 1 N N N 9.455  5.152  8.173  4.177   -2.608 -0.489 H16   ZGP 52 
ZGP H17   H17   H 0 1 N N N 8.059  6.270  8.006  2.743   -1.556 -0.555 H17   ZGP 53 
ZGP H18   H18   H 0 1 N N N 3.480  3.649  7.847  4.133   3.578  -0.133 H18   ZGP 54 
ZGP H19   H19   H 0 1 N N N 4.007  4.798  6.571  5.110   3.845  -1.596 H19   ZGP 55 
ZGP H20   H20   H 0 1 N N N 3.731  3.070  6.165  3.457   3.199  -1.735 H20   ZGP 56 
ZGP H21   H21   H 0 1 N N N 9.783  1.731  7.797  5.938   -2.798 -1.278 H21   ZGP 57 
ZGP H22   H22   H 0 1 N N N 10.096 3.486  8.011  7.562   -2.082 -1.135 H22   ZGP 58 
ZGP H23   H23   H 0 1 N N N 9.136  3.645  12.016 7.092   -3.967 2.562  H23   ZGP 59 
ZGP H14   H14   H 0 1 N N N 5.716  0.425  6.775  7.275   2.972  0.055  H14   ZGP 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZGP N2    C2    SING N N 1  
ZGP C2    N1    SING N N 2  
ZGP C2    N3    DOUB N N 3  
ZGP N1    C6    SING N N 4  
ZGP N3    C4    SING N N 5  
ZGP "O2'" "C2'" SING N N 6  
ZGP C6    O6    DOUB N N 7  
ZGP C6    C5    SING N N 8  
ZGP C4    C5    DOUB Y N 9  
ZGP C4    N9    SING Y N 10 
ZGP "C1'" "C2'" SING N N 11 
ZGP "C1'" N9    SING N N 12 
ZGP "C1'" "O4'" SING N N 13 
ZGP "C2'" "C3'" SING N N 14 
ZGP C5    N7    SING Y N 15 
ZGP N9    C8    SING Y N 16 
ZGP "O4'" "C4'" SING N N 17 
ZGP "O3'" "C3'" SING N N 18 
ZGP "C4'" "C3'" SING N N 19 
ZGP "C4'" "C5'" SING N N 20 
ZGP N7    C8    DOUB Y N 21 
ZGP "C5'" "O5'" SING N N 22 
ZGP "O5'" PBK   SING N N 23 
ZGP OAG   PBK   DOUB N N 24 
ZGP PBK   OAJ   SING N N 25 
ZGP PBK   OAT   SING N N 26 
ZGP OAE   CBB   SING N N 27 
ZGP CAB   CAY   SING N N 28 
ZGP CBB   CAY   SING Y N 29 
ZGP CBB   NAR   DOUB Y N 30 
ZGP CAY   CBA   DOUB Y N 31 
ZGP NAR   CAZ   SING Y N 32 
ZGP CBA   OAT   SING N N 33 
ZGP CBA   CAX   SING Y N 34 
ZGP CAZ   CAX   DOUB Y N 35 
ZGP CAZ   CAM   SING N N 36 
ZGP CAX   CAA   SING N N 37 
ZGP CAM   CAV   SING N N 38 
ZGP CAV   OAD   DOUB N N 39 
ZGP CAV   SAK   SING N N 40 
ZGP N1    H1    SING N N 41 
ZGP N2    H2    SING N N 42 
ZGP N2    H3    SING N N 43 
ZGP C8    H4    SING N N 44 
ZGP "C1'" H5    SING N N 45 
ZGP "C2'" H6    SING N N 46 
ZGP "O2'" H7    SING N N 47 
ZGP "C3'" H8    SING N N 48 
ZGP "O3'" H9    SING N N 49 
ZGP "C4'" H10   SING N N 50 
ZGP "C5'" H11   SING N N 51 
ZGP "C5'" H12   SING N N 52 
ZGP OAJ   H13   SING N N 53 
ZGP CAA   H15   SING N N 54 
ZGP CAA   H16   SING N N 55 
ZGP CAA   H17   SING N N 56 
ZGP CAB   H18   SING N N 57 
ZGP CAB   H19   SING N N 58 
ZGP CAB   H20   SING N N 59 
ZGP CAM   H21   SING N N 60 
ZGP CAM   H22   SING N N 61 
ZGP SAK   H23   SING N N 62 
ZGP OAE   H14   SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZGP SMILES           ACDLabs              12.01 "O=C(S)Cc4nc(O)c(c(OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O)c4C)C" 
ZGP InChI            InChI                1.03  
"InChI=1S/C19H23N6O10PS/c1-6-8(3-10(26)37)22-16(29)7(2)14(6)35-36(31,32)33-4-9-12(27)13(28)18(34-9)25-5-21-11-15(25)23-19(20)24-17(11)30/h5,9,12-13,18,27-28H,3-4H2,1-2H3,(H,22,29)(H,26,37)(H,31,32)(H3,20,23,24,30)/t9-,12-,13-,18-/m1/s1" 
ZGP InChIKey         InChI                1.03  JZNXQNYXQOKUIF-ACDAHVMNSA-N 
ZGP SMILES_CANONICAL CACTVS               3.385 "Cc1c(O)nc(CC(S)=O)c(C)c1O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N" 
ZGP SMILES           CACTVS               3.385 "Cc1c(O)nc(CC(S)=O)c(C)c1O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N" 
ZGP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(nc(c(c1OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O)C)O)CC(=O)S" 
ZGP SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1c(nc(c(c1OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O)C)O)CC(=O)S" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZGP "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxo-2-sulfanylethyl)pyridin-4-yl]oxy}phosphoryl]guanosine"                                                                              
ZGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[4-[[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3,5-dimethyl-6-oxidanyl-pyridin-2-yl]ethanethioic S-acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZGP "Create component"    2014-05-23 PDBJ 
ZGP "Modify linking type" 2014-06-25 PDBJ 
ZGP "Modify formula"      2014-06-25 PDBJ 
ZGP "Modify name"         2014-06-25 PDBJ 
ZGP "Initial release"     2015-04-29 RCSB 
# 
