data_DMQ
#

_chem_comp.id                                   DMQ
_chem_comp.name                                 "[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-1,3-BIS([(3-AMINO)PHENYL]METHYL)-4,7-BIS(PHENYLMETHYL)-2H-1,3-DIAZEPINONE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H36 N4 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "DMP450(INHIBITOR OF DUPONT MERCK)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        450
_chem_comp.formula_weight                       536.664
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DMQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1MER
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DMQ  C1    C1    C  0  1  N  N  N   -8.871  15.514  27.906   2.544  -2.502   0.504  C1    DMQ   1  
DMQ  O1    O1    O  0  1  N  N  N   -8.183  14.504  27.937   3.078  -3.607   0.334  O1    DMQ   2  
DMQ  N2    N2    N  0  1  N  N  N   -8.707  16.340  26.843   2.481  -1.910   1.773  N2    DMQ   3  
DMQ  C2    C2    C  0  1  N  N  N   -8.054  15.792  25.645   3.378  -2.410   2.809  C2    DMQ   4  
DMQ  C3    C3    C  0  1  N  N  R   -8.897  17.811  26.885   1.336  -1.112   2.250  C3    DMQ   5  
DMQ  C4    C4    C  0  1  N  N  S  -10.289  18.339  27.132   1.301   0.313   1.694  C4    DMQ   6  
DMQ  O4    O4    O  0  1  N  N  N  -10.202  19.708  26.819   0.283   1.033   2.401  O4    DMQ   7  
DMQ  C5    C5    C  0  1  N  N  S  -10.714  18.104  28.571   1.003   0.394   0.201  C5    DMQ   8  
DMQ  O5    O5    O  0  1  N  N  N  -11.943  18.729  28.856   0.944   1.773  -0.186  O5    DMQ   9  
DMQ  C6    C6    C  0  1  N  N  R  -10.940  16.633  28.847   2.022  -0.322  -0.689  C6    DMQ  10  
DMQ  C7    C7    C  0  1  N  N  N   -9.615  14.945  30.156   1.683  -2.522  -1.794  C7    DMQ  11  
DMQ  N7    N7    N  0  1  N  N  N   -9.746  15.750  28.932   1.980  -1.792  -0.566  N7    DMQ  12  
DMQ  C20   C20   C  0  1  Y  N  N   -8.677  16.113  24.313   4.687  -1.674   2.822  C20   DMQ  13  
DMQ  C21   C21   C  0  1  Y  N  N  -10.074  15.993  24.106   4.827  -0.538   3.611  C21   DMQ  14  
DMQ  C22   C22   C  0  1  Y  N  N  -10.639  16.317  22.860   6.042   0.147   3.623  C22   DMQ  15  
DMQ  C23   C23   C  0  1  Y  N  N   -9.797  16.756  21.822   7.108  -0.308   2.846  C23   DMQ  16  
DMQ  C28   C28   C  0  1  Y  N  N   -8.409  16.869  22.033   6.958  -1.449   2.058  C28   DMQ  17  
DMQ  N29   N29   N  0  1  N  N  N   -7.580  17.364  20.991   8.035  -1.909   1.272  N29   DMQ  18  
DMQ  C29   C29   C  0  1  Y  N  N   -7.839  16.548  23.275   5.743  -2.134   2.046  C29   DMQ  19  
DMQ  C31   C31   C  0  1  N  N  N   -7.790  18.443  27.746   0.015  -1.882   2.102  C31   DMQ  20  
DMQ  C32   C32   C  0  1  Y  N  N   -6.429  18.274  27.118  -0.103  -2.965   3.135  C32   DMQ  21  
DMQ  C33   C33   C  0  1  Y  N  N   -5.509  17.356  27.673   0.380  -4.238   2.855  C33   DMQ  22  
DMQ  C34   C34   C  0  1  Y  N  N   -4.254  17.165  27.057   0.270  -5.244   3.815  C34   DMQ  23  
DMQ  C35   C35   C  0  1  Y  N  N   -3.924  17.894  25.891  -0.323  -4.970   5.048  C35   DMQ  24  
DMQ  C36   C36   C  0  1  Y  N  N   -4.848  18.818  25.333  -0.805  -3.690   5.321  C36   DMQ  25  
DMQ  C37   C37   C  0  1  Y  N  N   -6.104  19.013  25.948  -0.695  -2.684   4.361  C37   DMQ  26  
DMQ  C61   C61   C  0  1  N  N  N  -12.035  15.950  27.990   3.461   0.204  -0.574  C61   DMQ  27  
DMQ  C62   C62   C  0  1  Y  N  N  -12.630  14.749  28.693   4.249  -0.086  -1.818  C62   DMQ  28  
DMQ  C63   C63   C  0  1  Y  N  N  -13.571  14.957  29.728   4.959  -1.276  -1.920  C63   DMQ  29  
DMQ  C64   C64   C  0  1  Y  N  N  -14.068  13.860  30.463   5.692  -1.545  -3.076  C64   DMQ  30  
DMQ  C65   C65   C  0  1  Y  N  N  -13.619  12.551  30.156   5.709  -0.623  -4.122  C65   DMQ  31  
DMQ  C66   C66   C  0  1  Y  N  N  -12.688  12.341  29.115   4.993   0.570  -4.012  C66   DMQ  32  
DMQ  C67   C67   C  0  1  Y  N  N  -12.196  13.442  28.379   4.261   0.839  -2.855  C67   DMQ  33  
DMQ  C70   C70   C  0  1  Y  N  N   -9.615  15.656  31.486   0.294  -3.092  -1.787  C70   DMQ  34  
DMQ  C71   C71   C  0  1  Y  N  N  -10.438  15.153  32.513   0.077  -4.367  -1.280  C71   DMQ  35  
DMQ  C72   C72   C  0  1  Y  N  N  -10.450  15.815  33.756  -1.214  -4.896  -1.273  C72   DMQ  36  
DMQ  N79   N79   N  0  1  N  N  N  -11.313  15.356  34.793  -1.444  -6.190  -0.760  N79   DMQ  37  
DMQ  C77   C77   C  0  1  Y  N  N   -9.638  16.948  33.986  -2.279  -4.145  -1.771  C77   DMQ  38  
DMQ  C78   C78   C  0  1  Y  N  N   -8.801  17.448  32.968  -2.052  -2.865  -2.277  C78   DMQ  39  
DMQ  C79   C79   C  0  1  Y  N  N   -8.800  16.801  31.716  -0.761  -2.336  -2.285  C79   DMQ  40  
DMQ  H21A  1H2   H  0  0  N  N  N   -6.981  16.097  25.635   3.539  -3.479   2.629  H21A  DMQ  41  
DMQ  H22A  2H2   H  0  0  N  N  N   -7.954  14.686  25.750   2.864  -2.316   3.771  H22A  DMQ  42  
DMQ  H3    H3    H  0  1  N  N  N   -8.783  18.160  25.832   1.471  -1.007   3.336  H3    DMQ  43  
DMQ  H4    H4    H  0  1  N  N  N  -11.062  17.824  26.515   2.243   0.828   1.915  H4    DMQ  44  
DMQ  HO4   HO4   H  0  1  N  N  N  -11.078  20.040  26.974   0.029   1.770   1.829  HO4   DMQ  45  
DMQ  H5    H5    H  0  1  N  N  N   -9.889  18.518  29.196   0.000  -0.005   0.005  H5    DMQ  46  
DMQ  HO5   HO5   H  0  1  N  N  N  -12.208  18.582  29.756   1.430   1.838  -1.020  HO5   DMQ  47  
DMQ  H6    H6    H  0  1  N  N  N  -11.317  16.729  29.891   1.730  -0.095  -1.724  H6    DMQ  48  
DMQ  H71A  1H7   H  0  0  N  N  N  -10.409  14.163  30.162   2.426  -3.319  -1.901  H71A  DMQ  49  
DMQ  H72   2H7   H  0  1  N  N  N   -8.696  14.316  30.080   1.820  -1.833  -2.634  H72   DMQ  50  
DMQ  H21   H21   H  0  1  N  N  N  -10.728  15.644  24.922   4.002  -0.176   4.219  H21   DMQ  51  
DMQ  H22   H22   H  0  1  N  N  N  -11.726  16.228  22.699   6.159   1.035   4.238  H22   DMQ  52  
DMQ  H23   H23   H  0  1  N  N  N  -10.226  17.012  20.839   8.050   0.233   2.863  H23   DMQ  53  
DMQ  HN21  1HN2  H  0  0  N  N  N   -6.574  17.445  21.143   8.354  -2.850   1.384  HN21  DMQ  54  
DMQ  HN22  2HN2  H  0  0  N  N  N   -7.938  18.271  20.693   8.521  -1.262   0.685  HN22  DMQ  55  
DMQ  H29   H29   H  0  1  N  N  N   -6.750  16.636  23.432   5.624  -3.024   1.431  H29   DMQ  56  
DMQ  H311  1H31  H  0  0  N  N  N   -8.006  19.514  27.964  -0.038  -2.308   1.098  H311  DMQ  57  
DMQ  H312  2H31  H  0  0  N  N  N   -7.809  18.046  28.787  -0.817  -1.181   2.190  H312  DMQ  58  
DMQ  H33   H33   H  0  1  N  N  N   -5.769  16.790  28.583   0.843  -4.461   1.898  H33   DMQ  59  
DMQ  H34   H34   H  0  1  N  N  N   -3.533  16.448  27.485   0.645  -6.241   3.603  H34   DMQ  60  
DMQ  H35   H35   H  0  1  N  N  N   -2.941  17.741  25.414  -0.408  -5.754   5.795  H35   DMQ  61  
DMQ  H36   H36   H  0  1  N  N  N   -4.590  19.384  24.422  -1.266  -3.477   6.281  H36   DMQ  62  
DMQ  H37   H37   H  0  1  N  N  N   -6.821  19.733  25.520  -1.074  -1.690   4.582  H37   DMQ  63  
DMQ  H611  1H61  H  0  0  N  N  N  -12.825  16.675  27.686   3.939  -0.255   0.294  H611  DMQ  64  
DMQ  H612  2H61  H  0  0  N  N  N  -11.649  15.679  26.979   3.432   1.279  -0.384  H612  DMQ  65  
DMQ  H63   H63   H  0  1  N  N  N  -13.918  15.977  29.962   4.952  -2.001  -1.111  H63   DMQ  66  
DMQ  H64   H64   H  0  1  N  N  N  -14.801  14.024  31.270   6.249  -2.474  -3.162  H64   DMQ  67  
DMQ  H65   H65   H  0  1  N  N  N  -13.996  11.689  30.731   6.279  -0.832  -5.022  H65   DMQ  68  
DMQ  H66   H66   H  0  1  N  N  N  -12.346  11.319  28.877   5.006   1.288  -4.826  H66   DMQ  69  
DMQ  H67   H67   H  0  1  N  N  N  -11.474  13.281  27.560   3.706   1.770  -2.778  H67   DMQ  70  
DMQ  H71   H71   H  0  1  N  N  N  -11.061  14.258  32.347   0.908  -4.951  -0.891  H71   DMQ  71  
DMQ  HN71  1HN7  H  0  0  N  N  N  -11.321  15.835  35.693  -2.089  -6.308  -0.005  HN71  DMQ  72  
DMQ  HN72  2HN7  H  0  0  N  N  N  -11.127  14.366  34.954  -0.890  -6.952  -1.094  HN72  DMQ  73  
DMQ  H77   H77   H  0  1  N  N  N   -9.657  17.446  34.969  -3.288  -4.547  -1.770  H77   DMQ  74  
DMQ  H78   H78   H  0  1  N  N  N   -8.160  18.327  33.147  -2.881  -2.280  -2.666  H78   DMQ  75  
DMQ  H79   H79   H  0  1  N  N  N   -8.156  17.193  30.910  -0.594  -1.338  -2.681  H79   DMQ  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DMQ  C1   O1    DOUB  N  N   1  
DMQ  C1   N2    SING  N  N   2  
DMQ  C1   N7    SING  N  N   3  
DMQ  N2   C2    SING  N  N   4  
DMQ  N2   C3    SING  N  N   5  
DMQ  C2   C20   SING  N  N   6  
DMQ  C2   H21A  SING  N  N   7  
DMQ  C2   H22A  SING  N  N   8  
DMQ  C3   C4    SING  N  N   9  
DMQ  C3   C31   SING  N  N  10  
DMQ  C3   H3    SING  N  N  11  
DMQ  C4   O4    SING  N  N  12  
DMQ  C4   C5    SING  N  N  13  
DMQ  C4   H4    SING  N  N  14  
DMQ  O4   HO4   SING  N  N  15  
DMQ  C5   O5    SING  N  N  16  
DMQ  C5   C6    SING  N  N  17  
DMQ  C5   H5    SING  N  N  18  
DMQ  O5   HO5   SING  N  N  19  
DMQ  C6   N7    SING  N  N  20  
DMQ  C6   C61   SING  N  N  21  
DMQ  C6   H6    SING  N  N  22  
DMQ  C7   N7    SING  N  N  23  
DMQ  C7   C70   SING  N  N  24  
DMQ  C7   H71A  SING  N  N  25  
DMQ  C7   H72   SING  N  N  26  
DMQ  C20  C21   DOUB  Y  N  27  
DMQ  C20  C29   SING  Y  N  28  
DMQ  C21  C22   SING  Y  N  29  
DMQ  C21  H21   SING  N  N  30  
DMQ  C22  C23   DOUB  Y  N  31  
DMQ  C22  H22   SING  N  N  32  
DMQ  C23  C28   SING  Y  N  33  
DMQ  C23  H23   SING  N  N  34  
DMQ  C28  N29   SING  N  N  35  
DMQ  C28  C29   DOUB  Y  N  36  
DMQ  N29  HN21  SING  N  N  37  
DMQ  N29  HN22  SING  N  N  38  
DMQ  C29  H29   SING  N  N  39  
DMQ  C31  C32   SING  N  N  40  
DMQ  C31  H311  SING  N  N  41  
DMQ  C31  H312  SING  N  N  42  
DMQ  C32  C33   DOUB  Y  N  43  
DMQ  C32  C37   SING  Y  N  44  
DMQ  C33  C34   SING  Y  N  45  
DMQ  C33  H33   SING  N  N  46  
DMQ  C34  C35   DOUB  Y  N  47  
DMQ  C34  H34   SING  N  N  48  
DMQ  C35  C36   SING  Y  N  49  
DMQ  C35  H35   SING  N  N  50  
DMQ  C36  C37   DOUB  Y  N  51  
DMQ  C36  H36   SING  N  N  52  
DMQ  C37  H37   SING  N  N  53  
DMQ  C61  C62   SING  N  N  54  
DMQ  C61  H611  SING  N  N  55  
DMQ  C61  H612  SING  N  N  56  
DMQ  C62  C63   DOUB  Y  N  57  
DMQ  C62  C67   SING  Y  N  58  
DMQ  C63  C64   SING  Y  N  59  
DMQ  C63  H63   SING  N  N  60  
DMQ  C64  C65   DOUB  Y  N  61  
DMQ  C64  H64   SING  N  N  62  
DMQ  C65  C66   SING  Y  N  63  
DMQ  C65  H65   SING  N  N  64  
DMQ  C66  C67   DOUB  Y  N  65  
DMQ  C66  H66   SING  N  N  66  
DMQ  C67  H67   SING  N  N  67  
DMQ  C70  C71   DOUB  Y  N  68  
DMQ  C70  C79   SING  Y  N  69  
DMQ  C71  C72   SING  Y  N  70  
DMQ  C71  H71   SING  N  N  71  
DMQ  C72  N79   SING  N  N  72  
DMQ  C72  C77   DOUB  Y  N  73  
DMQ  N79  HN71  SING  N  N  74  
DMQ  N79  HN72  SING  N  N  75  
DMQ  C77  C78   SING  Y  N  76  
DMQ  C77  H77   SING  N  N  77  
DMQ  C78  C79   DOUB  Y  N  78  
DMQ  C78  H78   SING  N  N  79  
DMQ  C79  H79   SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DMQ  SMILES            ACDLabs               10.04  "O=C1N(C(C(O)C(O)C(N1Cc2cccc(N)c2)Cc3ccccc3)Cc4ccccc4)Cc5cccc(N)c5"  
DMQ  SMILES_CANONICAL  CACTVS                3.341  "Nc1cccc(CN2[C@H](Cc3ccccc3)[C@H](O)[C@@H](O)[C@@H](Cc4ccccc4)N(Cc5cccc(N)c5)C2=O)c1"  
DMQ  SMILES            CACTVS                3.341  "Nc1cccc(CN2[CH](Cc3ccccc3)[CH](O)[CH](O)[CH](Cc4ccccc4)N(Cc5cccc(N)c5)C2=O)c1"  
DMQ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)C[C@@H]2[C@@H]([C@H]([C@H](N(C(=O)N2Cc3cccc(c3)N)Cc4cccc(c4)N)Cc5ccccc5)O)O"  
DMQ  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)CC2C(C(C(N(C(=O)N2Cc3cccc(c3)N)Cc4cccc(c4)N)Cc5ccccc5)O)O"  
DMQ  InChI             InChI                 1.03   "InChI=1S/C33H36N4O3/c34-27-15-7-13-25(17-27)21-36-29(19-23-9-3-1-4-10-23)31(38)32(39)30(20-24-11-5-2-6-12-24)37(33(36)40)22-26-14-8-16-28(35)18-26/h1-18,29-32,38-39H,19-22,34-35H2/t29-,30-,31+,32+/m1/s1"  
DMQ  InChIKey          InChI                 1.03   KYRSNWPSSXSNEP-ZRTHHSRSSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DMQ  "SYSTEMATIC NAME"  ACDLabs               10.04  "(4R,5S,6S,7R)-1,3-bis(3-aminobenzyl)-4,7-dibenzyl-5,6-dihydroxy-1,3-diazepan-2-one"  
DMQ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(4R,5S,6S,7R)-1,3-bis[(3-aminophenyl)methyl]-5,6-dihydroxy-4,7-bis(phenylmethyl)-1,3-diazepan-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DMQ  "Create component"   1999-07-08  RCSB  
DMQ  "Modify descriptor"  2011-06-04  RCSB  
DMQ  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DMQ
_pdbx_chem_comp_synonyms.name        "DMP450(INHIBITOR OF DUPONT MERCK)"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
