data_GDQ
# 
_chem_comp.id                                    GDQ 
_chem_comp.name                                  "(1~{S},2~{R},3~{R},4~{R},6~{S})-4-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H13 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-12 
_chem_comp.pdbx_modified_date                    2018-09-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        159.183 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GDQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HMG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GDQ C7  C1  C 0 1 N N N 4.955 24.740 3.307 -0.122 -1.802 0.495  C7  GDQ 1  
GDQ C4  C2  C 0 1 N N R 2.812 24.027 4.365 0.344  0.666  0.269  C4  GDQ 2  
GDQ C2  C3  C 0 1 N N S 4.926 22.774 4.983 -2.057 -0.074 0.072  C2  GDQ 3  
GDQ C1  C4  C 0 1 N N S 5.709 23.724 4.135 -1.598 -1.495 0.356  C1  GDQ 4  
GDQ O4  O1  O 0 1 N N N 1.403 23.778 4.166 1.278  1.592  -0.288 O4  GDQ 5  
GDQ C5  C5  C 0 1 N N R 3.510 24.374 3.041 0.757  -0.735 -0.122 C5  GDQ 6  
GDQ C6  C6  C 0 1 N N N 2.848 25.532 2.273 2.202  -0.966 0.326  C6  GDQ 7  
GDQ O6  O2  O 0 1 N N N 3.000 26.801 2.911 3.061  -0.039 -0.339 O6  GDQ 8  
GDQ C3  C7  C 0 1 N N R 3.408 22.787 4.993 -1.046 1.026  -0.213 C3  GDQ 9  
GDQ O3  O3  O 0 1 N N N 2.948 22.730 6.358 -1.468 2.224  0.442  O3  GDQ 10 
GDQ N2  N1  N 0 1 N N N 5.609 22.307 3.745 -2.163 -1.140 -0.944 N2  GDQ 11 
GDQ H1  H1  H 0 1 N N N 5.468 24.846 2.340 0.121  -1.889 1.554  H1  GDQ 12 
GDQ H2  H2  H 0 1 N N N 4.975 25.702 3.840 0.087  -2.754 0.008  H2  GDQ 13 
GDQ H3  H3  H 0 1 N N N 2.943 24.871 5.058 0.371  0.751  1.356  H3  GDQ 14 
GDQ H4  H4  H 0 1 N N N 5.399 22.480 5.931 -2.980 0.251  0.553  H4  GDQ 15 
GDQ H5  H5  H 0 1 N N N 6.675 24.057 4.542 -2.248 -2.086 1.002  H5  GDQ 16 
GDQ H6  H6  H 0 1 N N N 0.998 23.566 4.999 1.114  2.513  -0.042 H6  GDQ 17 
GDQ H7  H7  H 0 1 N N N 3.490 23.481 2.398 0.710  -0.826 -1.207 H7  GDQ 18 
GDQ H8  H8  H 0 1 N N N 1.773 25.317 2.178 2.275  -0.821 1.404  H8  GDQ 19 
GDQ H9  H9  H 0 1 N N N 3.301 25.589 1.272 2.501  -1.984 0.076  H9  GDQ 20 
GDQ H10 H10 H 0 1 N N N 2.572 27.471 2.391 3.995  -0.128 -0.103 H10 GDQ 21 
GDQ H11 H11 H 0 1 N N N 3.046 21.905 4.444 -1.012 1.205  -1.287 H11 GDQ 22 
GDQ H12 H12 H 0 1 N N N 3.307 21.959 6.782 -0.896 2.986  0.274  H12 GDQ 23 
GDQ H13 H13 H 0 1 N N N 5.068 22.047 2.945 -1.439 -1.049 -1.640 H13 GDQ 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GDQ C6 O6  SING N N 1  
GDQ C6 C5  SING N N 2  
GDQ C5 C7  SING N N 3  
GDQ C5 C4  SING N N 4  
GDQ C7 C1  SING N N 5  
GDQ N2 C1  SING N N 6  
GDQ N2 C2  SING N N 7  
GDQ C1 C2  SING N N 8  
GDQ O4 C4  SING N N 9  
GDQ C4 C3  SING N N 10 
GDQ C2 C3  SING N N 11 
GDQ C3 O3  SING N N 12 
GDQ C7 H1  SING N N 13 
GDQ C7 H2  SING N N 14 
GDQ C4 H3  SING N N 15 
GDQ C2 H4  SING N N 16 
GDQ C1 H5  SING N N 17 
GDQ O4 H6  SING N N 18 
GDQ C5 H7  SING N N 19 
GDQ C6 H8  SING N N 20 
GDQ C6 H9  SING N N 21 
GDQ O6 H10 SING N N 22 
GDQ C3 H11 SING N N 23 
GDQ O3 H12 SING N N 24 
GDQ N2 H13 SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GDQ InChI            InChI                1.03  "InChI=1S/C7H13NO3/c9-2-3-1-4-5(8-4)7(11)6(3)10/h3-11H,1-2H2/t3-,4+,5+,6-,7-/m1/s1" 
GDQ InChIKey         InChI                1.03  JACJTGDBUDQHPY-VOQCIKJUSA-N                                                         
GDQ SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1C[C@@H]2N[C@@H]2[C@@H](O)[C@@H]1O"                                         
GDQ SMILES           CACTVS               3.385 "OC[CH]1C[CH]2N[CH]2[CH](O)[CH]1O"                                                  
GDQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H]([C@@H]([C@@H]2[C@H]1N2)O)O)CO"                                      
GDQ SMILES           "OpenEye OEToolkits" 2.0.6 "C1C(C(C(C2C1N2)O)O)CO"                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GDQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{S},2~{R},3~{R},4~{R},6~{S})-4-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GDQ "Create component" 2018-09-12 EBI  
GDQ "Initial release"  2018-09-26 RCSB 
# 
