data_WDQ
# 
_chem_comp.id                                    WDQ 
_chem_comp.name                                  "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-1-(4-fluorophenyl)-4-oxo-4-{[3-(pyridin-3-yl)propyl]amino}butan-2-yl]-D-phenylalaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H37 Cl2 F N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-02 
_chem_comp.pdbx_modified_date                    2024-12-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        703.632 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WDQ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UEA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WDQ C1  C1  C  0 1 N N R N N N 9.146  1.353   20.227 -3.743 -0.946 -1.346 C1  WDQ 1  
WDQ C10 C2  C  0 1 Y N N N N N 8.128  1.160   24.808 -0.823 -3.082 2.484  C10 WDQ 2  
WDQ C11 C3  C  0 1 N N N N N N 9.702  -2.583  22.532 0.138  1.109  0.731  C11 WDQ 3  
WDQ C12 C4  C  0 1 N N S N N N 9.951  -4.955  22.066 2.060  2.469  1.359  C12 WDQ 4  
WDQ C13 C5  C  0 1 N N N N N N 9.286  -6.185  22.645 1.553  3.353  2.499  C13 WDQ 5  
WDQ C14 C6  C  0 1 Y N N N N N 9.211  -6.074  24.144 0.114  3.724  2.246  C14 WDQ 6  
WDQ C15 C7  C  0 1 Y N N N N N 10.201 -6.642  24.945 -0.188 4.866  1.528  C15 WDQ 7  
WDQ C16 C8  C  0 1 Y N N N N N 10.139 -6.541  26.333 -1.506 5.208  1.294  C16 WDQ 8  
WDQ C17 C9  C  0 1 Y N N N N N 9.082  -5.864  26.933 -2.525 4.406  1.780  C17 WDQ 9  
WDQ C18 C10 C  0 1 Y N N N N N 8.095  -5.297  26.138 -2.221 3.262  2.499  C18 WDQ 10 
WDQ C19 C11 C  0 1 Y N N N N N 8.157  -5.400  24.752 -0.902 2.920  2.727  C19 WDQ 11 
WDQ C2  C12 C  0 1 N N N N N N 8.635  0.176   21.019 -2.456 -1.109 -0.579 C2  WDQ 12 
WDQ C20 C13 C  0 1 N N N N N N 10.181 -5.109  20.591 3.553  2.194  1.551  C20 WDQ 13 
WDQ C21 C14 C  0 1 N N N N N N 10.963 -6.356  20.312 4.079  1.427  0.365  C21 WDQ 14 
WDQ C22 C15 C  0 1 N N N N N N 11.238 -8.441  19.077 5.890  0.326  -0.837 C22 WDQ 15 
WDQ C23 C16 C  0 1 N N N N N N 10.260 -9.428  18.498 7.383  0.052  -0.645 C23 WDQ 16 
WDQ C24 C17 C  0 1 N N N N N N 11.039 -10.517 17.830 7.917  -0.727 -1.849 C24 WDQ 17 
WDQ C25 C18 C  0 1 Y N N N N N 10.117 -11.550 17.249 9.388  -0.997 -1.659 C25 WDQ 18 
WDQ C26 C19 C  0 1 Y N N N N N 9.799  -11.546 15.894 10.333 -0.091 -2.116 C26 WDQ 19 
WDQ C27 C20 C  0 1 Y N N N N N 8.944  -12.528 15.393 11.674 -0.381 -1.920 C27 WDQ 20 
WDQ C28 C21 C  0 1 Y N N N N N 8.422  -13.496 16.251 12.022 -1.556 -1.279 C28 WDQ 21 
WDQ C29 C22 C  0 1 Y N N N N N 9.577  -12.533 18.066 9.811  -2.148 -1.023 C29 WDQ 22 
WDQ C3  C23 C  0 1 N N R N N N 8.875  -1.386  22.871 -0.617 -0.195 0.733  C3  WDQ 23 
WDQ C30 C24 C  0 1 N N N N N N 9.057  1.019   18.754 -3.438 -0.420 -2.750 C30 WDQ 24 
WDQ C31 C25 C  0 1 Y N N N N N 9.867  -0.212  18.434 -4.729 -0.140 -3.474 C31 WDQ 25 
WDQ C32 C26 C  0 1 Y N N N N N 9.323  -1.194  17.624 -5.374 1.088  -3.306 C32 WDQ 26 
WDQ C33 C27 C  0 1 N N N N N N 7.943  -0.994  17.104 -4.810 2.085  -2.446 C33 WDQ 27 
WDQ C34 C28 C  0 1 Y N N N N N 10.037 -2.343  17.296 -6.570 1.339  -3.981 C34 WDQ 28 
WDQ C35 C29 C  0 1 Y N N N N N 11.328 -2.522  17.786 -7.107 0.374  -4.808 C35 WDQ 29 
WDQ C36 C30 C  0 1 Y N N N N N 11.886 -1.543  18.600 -6.464 -0.840 -4.969 C36 WDQ 30 
WDQ C37 C31 C  0 1 Y N N N N N 11.160 -0.396  18.925 -5.275 -1.093 -4.308 C37 WDQ 31 
WDQ C4  C32 C  0 1 N N N N N N 9.090  -1.113  24.341 -0.930 -0.601 2.174  C4  WDQ 32 
WDQ C5  C33 C  0 1 Y N N N N N 7.987  -0.224  24.851 -1.576 -1.963 2.184  C5  WDQ 33 
WDQ C6  C34 C  0 1 Y N N N N N 6.808  -0.774  25.354 -2.922 -2.093 1.891  C6  WDQ 34 
WDQ C7  C35 C  0 1 Y N N N N N 5.783  0.026   25.815 -3.514 -3.343 1.899  C7  WDQ 35 
WDQ C8  C36 C  0 1 Y N N N N N 5.921  1.399   25.771 -2.760 -4.463 2.201  C8  WDQ 36 
WDQ C9  C37 C  0 1 Y N N N N N 7.092  1.969   25.269 -1.414 -4.332 2.493  C9  WDQ 37 
WDQ CL1 CL1 CL 0 0 N N N N N N 6.570  -2.475  25.425 -3.868 -0.687 1.513  CL1 WDQ 38 
WDQ CL2 CL2 CL 0 0 N N N N N N 4.618  2.368   26.363 -3.503 -6.032 2.213  CL2 WDQ 39 
WDQ F1  F1  F  0 1 N N N N N N 9.010  -5.753  28.283 -3.815 4.739  1.553  F1  WDQ 40 
WDQ N1  N1  N  0 1 N N N N N N 8.467  2.618   20.557 -4.422 -2.245 -1.446 N1  WDQ 41 
WDQ N2  N2  N  0 1 N N N N N N 9.325  -0.235  22.085 -1.868 -0.036 -0.013 N2  WDQ 42 
WDQ N3  N3  N  0 1 N N N N N N 9.130  -3.769  22.344 1.326  1.201  1.360  N3  WDQ 43 
WDQ N4  N4  N  0 1 N N N N N N 10.523 -7.207  19.386 5.378  1.072  0.315  N4  WDQ 44 
WDQ N5  N5  N  0 1 Y N N N N N 8.744  -13.490 17.575 11.096 -2.394 -0.858 N5  WDQ 45 
WDQ N6  N6  N  0 1 N N N N N N 6.876  -0.831  16.710 -4.363 2.875  -1.764 N6  WDQ 46 
WDQ O1  O1  O  0 1 N N N N N N 12.008 -6.583  20.931 3.334  1.129  -0.544 O1  WDQ 47 
WDQ O2  O2  O  0 1 N N N N N N 10.885 -2.471  22.460 -0.324 2.076  0.163  O2  WDQ 48 
WDQ O3  O3  O  0 1 N N N N N N 7.605  -0.415  20.683 -1.950 -2.205 -0.472 O3  WDQ 49 
WDQ H1  H1  H  0 1 N N N N N N 10.212 1.472   20.470 -4.389 -0.238 -0.825 H1  WDQ 50 
WDQ H2  H2  H  0 1 N N N N N N 9.033  1.603   24.420 0.229  -2.981 2.708  H2  WDQ 51 
WDQ H3  H3  H  0 1 N N N N N N 10.928 -4.831  22.557 1.903  2.977  0.407  H3  WDQ 52 
WDQ H4  H4  H  0 1 N N N N N N 8.269  -6.276  22.235 1.627  2.809  3.441  H4  WDQ 53 
WDQ H5  H5  H  0 1 N N N N N N 9.871  -7.076  22.375 2.158  4.258  2.554  H5  WDQ 54 
WDQ H6  H6  H  0 1 N N N N N N 11.025 -7.166  24.484 0.607  5.492  1.150  H6  WDQ 55 
WDQ H7  H7  H  0 1 N N N N N N 10.911 -6.988  26.943 -1.742 6.100  0.734  H7  WDQ 56 
WDQ H8  H8  H  0 1 N N N N N N 7.272  -4.771  26.600 -3.015 2.636  2.878  H8  WDQ 57 
WDQ H9  H9  H  0 1 N N N N N N 7.383  -4.954  24.145 -0.665 2.026  3.284  H9  WDQ 58 
WDQ H10 H10 H  0 1 N N N N N N 10.741 -4.239  20.219 4.088  3.140  1.638  H10 WDQ 59 
WDQ H11 H11 H  0 1 N N N N N N 9.210  -5.167  20.077 3.700  1.608  2.458  H11 WDQ 60 
WDQ H12 H12 H  0 1 N N N N N N 11.681 -8.853  19.996 5.742  0.913  -1.744 H12 WDQ 61 
WDQ H13 H13 H  0 1 N N N N N N 12.034 -8.235  18.346 5.355  -0.619 -0.925 H13 WDQ 62 
WDQ H14 H14 H  0 1 N N N N N N 9.615  -8.926  17.762 7.918  0.998  -0.557 H14 WDQ 63 
WDQ H15 H15 H  0 1 N N N N N N 9.639  -9.852  19.301 7.531  -0.535 0.262  H15 WDQ 64 
WDQ H16 H16 H  0 1 N N N N N N 11.697 -10.996 18.570 7.382  -1.673 -1.936 H16 WDQ 65 
WDQ H17 H17 H  0 1 N N N N N N 11.648 -10.083 17.024 7.770  -0.140 -2.756 H17 WDQ 66 
WDQ H18 H18 H  0 1 N N N N N N 10.209 -10.792 15.238 10.031 0.819  -2.614 H18 WDQ 67 
WDQ H19 H19 H  0 1 N N N N N N 8.687  -12.539 14.344 12.437 0.302  -2.263 H19 WDQ 68 
WDQ H20 H20 H  0 1 N N N N N N 7.758  -14.255 15.864 13.065 -1.789 -1.122 H20 WDQ 69 
WDQ H21 H21 H  0 1 N N N N N N 9.824  -12.539 19.117 9.081  -2.857 -0.660 H21 WDQ 70 
WDQ H22 H22 H  0 1 N N N N N N 7.812  -1.593  22.680 -0.009 -0.968 0.261  H22 WDQ 71 
WDQ H23 H23 H  0 1 N N N N N N 9.442  1.867   18.168 -2.857 0.500  -2.675 H23 WDQ 72 
WDQ H24 H24 H  0 1 N N N N N N 8.005  0.838   18.488 -2.866 -1.166 -3.301 H24 WDQ 73 
WDQ H25 H25 H  0 1 N N N N N N 9.590  -3.095  16.662 -7.074 2.286  -3.856 H25 WDQ 74 
WDQ H26 H26 H  0 1 N N N N N N 11.889 -3.411  17.537 -8.032 0.567  -5.331 H26 WDQ 75 
WDQ H27 H27 H  0 1 N N N N N N 12.888 -1.671  18.983 -6.889 -1.592 -5.618 H27 WDQ 76 
WDQ H28 H28 H  0 1 N N N N N N 11.603 0.355   19.562 -4.775 -2.041 -4.442 H28 WDQ 77 
WDQ H29 H29 H  0 1 N N N N N N 9.082  -2.063  24.896 -0.006 -0.633 2.751  H29 WDQ 78 
WDQ H30 H30 H  0 1 N N N N N N 10.060 -0.613  24.484 -1.611 0.126  2.617  H30 WDQ 79 
WDQ H31 H31 H  0 1 N N N N N N 4.880  -0.418  26.207 -4.565 -3.444 1.671  H31 WDQ 80 
WDQ H32 H32 H  0 1 N N N N N N 7.195  3.044   25.238 -0.825 -5.206 2.728  H32 WDQ 81 
WDQ H33 H33 H  0 1 N N N N N N 8.552  2.797   21.537 -5.318 -2.150 -1.900 H33 WDQ 82 
WDQ H34 H34 H  0 1 N N N N N N 8.888  3.366   20.044 -3.843 -2.918 -1.925 H34 WDQ 83 
WDQ H36 H36 H  0 1 N N N N N N 10.159 0.249   22.350 -2.274 0.841  -0.098 H36 WDQ 84 
WDQ H37 H37 H  0 1 N N N N N N 8.135  -3.854  22.392 1.695  0.427  1.814  H37 WDQ 85 
WDQ H38 H38 H  0 1 N N N N N N 9.681  -6.995  18.890 5.974  1.310  1.042  H38 WDQ 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WDQ C27 C26 DOUB Y N 1  
WDQ C27 C28 SING Y N 2  
WDQ C26 C25 SING Y N 3  
WDQ C28 N5  DOUB Y N 4  
WDQ N6  C33 TRIP N N 5  
WDQ C33 C32 SING N N 6  
WDQ C25 C24 SING N N 7  
WDQ C25 C29 DOUB Y N 8  
WDQ C34 C32 DOUB Y N 9  
WDQ C34 C35 SING Y N 10 
WDQ N5  C29 SING Y N 11 
WDQ C32 C31 SING Y N 12 
WDQ C35 C36 DOUB Y N 13 
WDQ C24 C23 SING N N 14 
WDQ C31 C30 SING N N 15 
WDQ C31 C37 DOUB Y N 16 
WDQ C23 C22 SING N N 17 
WDQ C36 C37 SING Y N 18 
WDQ C30 C1  SING N N 19 
WDQ C22 N4  SING N N 20 
WDQ N4  C21 SING N N 21 
WDQ C1  N1  SING N N 22 
WDQ C1  C2  SING N N 23 
WDQ C21 C20 SING N N 24 
WDQ C21 O1  DOUB N N 25 
WDQ C20 C12 SING N N 26 
WDQ O3  C2  DOUB N N 27 
WDQ C2  N2  SING N N 28 
WDQ C12 N3  SING N N 29 
WDQ C12 C13 SING N N 30 
WDQ N2  C3  SING N N 31 
WDQ N3  C11 SING N N 32 
WDQ O2  C11 DOUB N N 33 
WDQ C11 C3  SING N N 34 
WDQ C13 C14 SING N N 35 
WDQ C3  C4  SING N N 36 
WDQ C14 C19 DOUB Y N 37 
WDQ C14 C15 SING Y N 38 
WDQ C4  C5  SING N N 39 
WDQ C19 C18 SING Y N 40 
WDQ C10 C5  DOUB Y N 41 
WDQ C10 C9  SING Y N 42 
WDQ C5  C6  SING Y N 43 
WDQ C15 C16 DOUB Y N 44 
WDQ C9  C8  DOUB Y N 45 
WDQ C6  CL1 SING N N 46 
WDQ C6  C7  DOUB Y N 47 
WDQ C8  C7  SING Y N 48 
WDQ C8  CL2 SING N N 49 
WDQ C18 C17 DOUB Y N 50 
WDQ C16 C17 SING Y N 51 
WDQ C17 F1  SING N N 52 
WDQ C1  H1  SING N N 53 
WDQ C10 H2  SING N N 54 
WDQ C12 H3  SING N N 55 
WDQ C13 H4  SING N N 56 
WDQ C13 H5  SING N N 57 
WDQ C15 H6  SING N N 58 
WDQ C16 H7  SING N N 59 
WDQ C18 H8  SING N N 60 
WDQ C19 H9  SING N N 61 
WDQ C20 H10 SING N N 62 
WDQ C20 H11 SING N N 63 
WDQ C22 H12 SING N N 64 
WDQ C22 H13 SING N N 65 
WDQ C23 H14 SING N N 66 
WDQ C23 H15 SING N N 67 
WDQ C24 H16 SING N N 68 
WDQ C24 H17 SING N N 69 
WDQ C26 H18 SING N N 70 
WDQ C27 H19 SING N N 71 
WDQ C28 H20 SING N N 72 
WDQ C29 H21 SING N N 73 
WDQ C3  H22 SING N N 74 
WDQ C30 H23 SING N N 75 
WDQ C30 H24 SING N N 76 
WDQ C34 H25 SING N N 77 
WDQ C35 H26 SING N N 78 
WDQ C36 H27 SING N N 79 
WDQ C37 H28 SING N N 80 
WDQ C4  H29 SING N N 81 
WDQ C4  H30 SING N N 82 
WDQ C7  H31 SING N N 83 
WDQ C9  H32 SING N N 84 
WDQ N1  H33 SING N N 85 
WDQ N1  H34 SING N N 86 
WDQ N2  H36 SING N N 87 
WDQ N3  H37 SING N N 88 
WDQ N4  H38 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WDQ SMILES           ACDLabs              12.01 "N#Cc1ccccc1CC(N)C(=O)NC(Cc1ccc(Cl)cc1Cl)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NCCCc1cccnc1"                                                                                                                                                                                             
WDQ InChI            InChI                1.06  "InChI=1S/C37H37Cl2FN6O3/c38-29-12-11-27(32(39)20-29)19-34(46-36(48)33(42)18-26-7-1-2-8-28(26)22-41)37(49)45-31(17-24-9-13-30(40)14-10-24)21-35(47)44-16-4-6-25-5-3-15-43-23-25/h1-3,5,7-15,20,23,31,33-34H,4,6,16-19,21,42H2,(H,44,47)(H,45,49)(H,46,48)/t31-,33+,34+/m0/s1" 
WDQ InChIKey         InChI                1.06  NFTGBANRPYFIJR-HEAIWMBWSA-N                                                                                                                                                                                                                                                   
WDQ SMILES_CANONICAL CACTVS               3.385 "N[C@H](Cc1ccccc1C#N)C(=O)N[C@H](Cc2ccc(Cl)cc2Cl)C(=O)N[C@H](CC(=O)NCCCc3cccnc3)Cc4ccc(F)cc4"                                                                                                                                                                                 
WDQ SMILES           CACTVS               3.385 "N[CH](Cc1ccccc1C#N)C(=O)N[CH](Cc2ccc(Cl)cc2Cl)C(=O)N[CH](CC(=O)NCCCc3cccnc3)Cc4ccc(F)cc4"                                                                                                                                                                                    
WDQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C[C@H](C(=O)N[C@H](Cc2ccc(cc2Cl)Cl)C(=O)N[C@@H](Cc3ccc(cc3)F)CC(=O)NCCCc4cccnc4)N)C#N"                                                                                                                                                                            
WDQ SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CC(C(=O)NC(Cc2ccc(cc2Cl)Cl)C(=O)NC(Cc3ccc(cc3)F)CC(=O)NCCCc4cccnc4)N)C#N"                                                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WDQ "SYSTEMATIC NAME" ACDLabs              12.01 "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-1-(4-fluorophenyl)-4-oxo-4-{[3-(pyridin-3-yl)propyl]amino}butan-2-yl]-D-phenylalaninamide"                                      
WDQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-azanyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-4-(4-fluorophenyl)-~{N}-(3-pyridin-3-ylpropyl)butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WDQ "Create component" 2023-10-02 RCSB 
WDQ "Initial release"  2025-01-01 RCSB 
# 
