data_08R
# 
_chem_comp.id                                    08R 
_chem_comp.name                                  "6-{[(3S,4S)-4-{2-[(2-methoxybenzyl)amino]ethoxy}pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-10-18 
_chem_comp.pdbx_modified_date                    2012-03-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        370.489 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     08R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3TYM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
08R N02   N02   N 0 1 N N N 15.395 -0.773 23.722 5.993  1.760  0.683  N02   08R 1  
08R C02   C02   C 0 1 Y N N 14.524 0.151  23.273 4.664  1.858  0.288  C02   08R 2  
08R C03   C03   C 0 1 Y N N 14.857 0.952  22.167 4.173  3.072  -0.182 C03   08R 3  
08R C04   C04   C 0 1 Y N N 13.899 1.869  21.718 2.849  3.156  -0.572 C04   08R 4  
08R C07   C07   C 0 1 N N N 14.183 2.782  20.548 2.278  4.452  -1.088 C07   08R 5  
08R C05   C05   C 0 1 Y N N 12.669 1.956  22.363 2.057  2.019  -0.478 C05   08R 6  
08R N01   N01   N 0 1 Y N N 13.299 0.239  23.870 3.879  0.795  0.358  N01   08R 7  
08R C06   C06   C 0 1 Y N N 12.373 1.135  23.455 2.610  0.847  -0.002 C06   08R 8  
08R C08   C08   C 0 1 N N N 11.007 1.214  24.157 1.756  -0.390 0.103  C08   08R 9  
08R "C3'" "C3'" C 0 1 N N S 9.992  0.271  23.490 2.418  -1.534 -0.667 "C3'" 08R 10 
08R "C2'" "C2'" C 0 1 N N N 10.348 -1.204 23.600 3.742  -1.944 0.015  "C2'" 08R 11 
08R "N1'" "N1'" N 0 1 N N N 9.741  -1.629 24.858 3.797  -3.421 -0.133 "N1'" 08R 12 
08R "C5'" "C5'" C 0 1 N N N 8.739  -0.686 25.341 2.397  -3.863 0.092  "C5'" 08R 13 
08R "C4'" "C4'" C 0 1 N N S 8.640  0.321  24.186 1.534  -2.797 -0.616 "C4'" 08R 14 
08R O09   O09   O 0 1 N N N 8.353  1.636  24.639 0.346  -2.541 0.135  O09   08R 15 
08R C10   C10   C 0 1 N N N 7.205  2.170  23.989 -0.784 -3.308 -0.285 C10   08R 16 
08R C11   C11   C 0 1 N N N 6.123  2.441  25.009 -1.992 -2.954 0.585  C11   08R 17 
08R N12   N12   N 0 1 N N N 6.646  3.087  26.196 -2.367 -1.552 0.355  N12   08R 18 
08R C13   C13   C 0 1 N N N 5.946  2.888  27.469 -3.526 -1.176 1.176  C13   08R 19 
08R C21   C21   C 0 1 Y N N 4.669  3.707  27.527 -3.880 0.265  0.914  C21   08R 20 
08R C22   C22   C 0 1 Y N N 3.323  3.047  27.547 -4.612 0.607  -0.214 C22   08R 21 
08R O22   O22   O 0 1 N N N 3.214  1.663  27.520 -5.010 -0.358 -1.085 O22   08R 22 
08R C27   C27   C 0 1 N N N 2.000  0.966  27.851 -5.760 0.066  -2.225 C27   08R 23 
08R C26   C26   C 0 1 Y N N 4.747  5.101  27.547 -3.482 1.247  1.800  C26   08R 24 
08R C25   C25   C 0 1 Y N N 3.580  5.857  27.589 -3.806 2.569  1.561  C25   08R 25 
08R C24   C24   C 0 1 Y N N 2.321  5.248  27.607 -4.531 2.913  0.434  C24   08R 26 
08R C23   C23   C 0 1 Y N N 2.183  3.860  27.583 -4.936 1.934  -0.452 C23   08R 27 
08R H1    H1    H 0 1 N N N 14.980 -1.285 24.474 6.342  0.915  1.008  H1    08R 28 
08R H2    H2    H 0 1 N N N 15.627 -1.401 22.979 6.574  2.536  0.630  H2    08R 29 
08R H3    H3    H 0 1 N N N 15.817 0.863  21.681 4.817  3.937  -0.242 H3    08R 30 
08R H4    H4    H 0 1 N N N 13.867 2.292  19.615 2.405  4.500  -2.169 H4    08R 31 
08R H5    H5    H 0 1 N N N 13.628 3.723  20.674 1.216  4.503  -0.844 H5    08R 32 
08R H6    H6    H 0 1 N N N 15.261 2.996  20.503 2.799  5.289  -0.623 H6    08R 33 
08R H7    H7    H 0 1 N N N 11.934 2.667  22.016 1.019  2.051  -0.774 H7    08R 34 
08R H8    H8    H 0 1 N N N 11.128 0.922  25.211 1.650  -0.670 1.151  H8    08R 35 
08R H9    H9    H 0 1 N N N 10.632 2.246  24.095 0.772  -0.189 -0.320 H9    08R 36 
08R H10   H10   H 0 1 N N N 9.986  0.621  22.447 2.601  -1.239 -1.700 H10   08R 37 
08R H11   H11   H 0 1 N N N 9.945  -1.775 22.751 4.589  -1.479 -0.489 H11   08R 38 
08R H12   H12   H 0 1 N N N 11.438 -1.351 23.614 3.727  -1.667 1.069  H12   08R 39 
08R H13   H13   H 0 1 N N N 9.299  -2.514 24.713 4.115  -3.680 -1.055 H13   08R 40 
08R H15   H15   H 0 1 N N N 9.051  -0.203 26.279 2.232  -4.844 -0.354 H15   08R 41 
08R H16   H16   H 0 1 N N N 7.775  -1.179 25.537 2.173  -3.889 1.158  H16   08R 42 
08R H17   H17   H 0 1 N N N 7.813  0.060  23.510 1.280  -3.122 -1.625 H17   08R 43 
08R H18   H18   H 0 1 N N N 7.475  3.109  23.484 -1.009 -3.083 -1.327 H18   08R 44 
08R H19   H19   H 0 1 N N N 6.835  1.447  23.247 -0.561 -4.370 -0.182 H19   08R 45 
08R H20   H20   H 0 1 N N N 5.368  3.099  24.554 -2.830 -3.601 0.324  H20   08R 46 
08R H21   H21   H 0 1 N N N 5.668  1.483  25.302 -1.738 -3.095 1.635  H21   08R 47 
08R H22   H22   H 0 1 N N N 7.575  2.739  26.324 -1.587 -0.936 0.528  H22   08R 48 
08R H24   H24   H 0 1 N N N 5.691  1.823  27.573 -4.374 -1.811 0.919  H24   08R 49 
08R H25   H25   H 0 1 N N N 6.607  3.199  28.291 -3.282 -1.304 2.230  H25   08R 50 
08R H26   H26   H 0 1 N N N 2.161  -0.118 27.756 -5.164 0.763  -2.813 H26   08R 51 
08R H27   H27   H 0 1 N N N 1.711  1.205  28.885 -6.015 -0.800 -2.835 H27   08R 52 
08R H28   H28   H 0 1 N N N 1.199  1.278  27.165 -6.675 0.559  -1.895 H28   08R 53 
08R H29   H29   H 0 1 N N N 5.710  5.590  27.530 -2.916 0.981  2.681  H29   08R 54 
08R H30   H30   H 0 1 N N N 3.647  6.935  27.608 -3.494 3.335  2.255  H30   08R 55 
08R H31   H31   H 0 1 N N N 1.436  5.866  27.640 -4.784 3.947  0.250  H31   08R 56 
08R H32   H32   H 0 1 N N N 1.200  3.413  27.592 -5.505 2.203  -1.330 H32   08R 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
08R C07   C04   SING N N 1  
08R C04   C03   DOUB Y N 2  
08R C04   C05   SING Y N 3  
08R C03   C02   SING Y N 4  
08R C05   C06   DOUB Y N 5  
08R C02   N02   SING N N 6  
08R C02   N01   DOUB Y N 7  
08R C06   N01   SING Y N 8  
08R C06   C08   SING N N 9  
08R "C3'" "C2'" SING N N 10 
08R "C3'" C08   SING N N 11 
08R "C3'" "C4'" SING N N 12 
08R "C2'" "N1'" SING N N 13 
08R C10   O09   SING N N 14 
08R C10   C11   SING N N 15 
08R "C4'" O09   SING N N 16 
08R "C4'" "C5'" SING N N 17 
08R "N1'" "C5'" SING N N 18 
08R C11   N12   SING N N 19 
08R N12   C13   SING N N 20 
08R C13   C21   SING N N 21 
08R O22   C22   SING N N 22 
08R O22   C27   SING N N 23 
08R C21   C22   DOUB Y N 24 
08R C21   C26   SING Y N 25 
08R C22   C23   SING Y N 26 
08R C26   C25   DOUB Y N 27 
08R C23   C24   DOUB Y N 28 
08R C25   C24   SING Y N 29 
08R N02   H1    SING N N 30 
08R N02   H2    SING N N 31 
08R C03   H3    SING N N 32 
08R C07   H4    SING N N 33 
08R C07   H5    SING N N 34 
08R C07   H6    SING N N 35 
08R C05   H7    SING N N 36 
08R C08   H8    SING N N 37 
08R C08   H9    SING N N 38 
08R "C3'" H10   SING N N 39 
08R "C2'" H11   SING N N 40 
08R "C2'" H12   SING N N 41 
08R "N1'" H13   SING N N 42 
08R "C5'" H15   SING N N 43 
08R "C5'" H16   SING N N 44 
08R "C4'" H17   SING N N 45 
08R C10   H18   SING N N 46 
08R C10   H19   SING N N 47 
08R C11   H20   SING N N 48 
08R C11   H21   SING N N 49 
08R N12   H22   SING N N 50 
08R C13   H24   SING N N 51 
08R C13   H25   SING N N 52 
08R C27   H26   SING N N 53 
08R C27   H27   SING N N 54 
08R C27   H28   SING N N 55 
08R C26   H29   SING N N 56 
08R C25   H30   SING N N 57 
08R C24   H31   SING N N 58 
08R C23   H32   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
08R SMILES           ACDLabs              12.01 "O(CCNCc1ccccc1OC)C2C(CNC2)Cc3nc(N)cc(c3)C"                                                                                                                                
08R InChI            InChI                1.03  "InChI=1S/C21H30N4O2/c1-15-9-18(25-21(22)10-15)11-17-13-24-14-20(17)27-8-7-23-12-16-5-3-4-6-19(16)26-2/h3-6,9-10,17,20,23-24H,7-8,11-14H2,1-2H3,(H2,22,25)/t17-,20+/m0/s1" 
08R InChIKey         InChI                1.03  CNZPKQOAIMARQF-FXAWDEMLSA-N                                                                                                                                                
08R SMILES_CANONICAL CACTVS               3.370 "COc1ccccc1CNCCO[C@@H]2CNC[C@@H]2Cc3cc(C)cc(N)n3"                                                                                                                          
08R SMILES           CACTVS               3.370 "COc1ccccc1CNCCO[CH]2CNC[CH]2Cc3cc(C)cc(N)n3"                                                                                                                              
08R SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)C[C@H]2CNC[C@H]2OCCNCc3ccccc3OC"                                                                                                                            
08R SMILES           "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)CC2CNCC2OCCNCc3ccccc3OC"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
08R "SYSTEMATIC NAME" ACDLabs              12.01 "6-{[(3S,4S)-4-{2-[(2-methoxybenzyl)amino]ethoxy}pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine"        
08R "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "6-[[(3S,4S)-4-[2-[(2-methoxyphenyl)methylamino]ethoxy]pyrrolidin-3-yl]methyl]-4-methyl-pyridin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
08R "Create component" 2011-10-18 RCSB 
# 
