data_0VR
#

_chem_comp.id                                   0VR
_chem_comp.name                                 "1-(O-carboxy-phenylamino)-1-deoxy-D-ribulose-5-phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H18 N O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1-[(2-carboxyphenyl)amino]-1-deoxy-5-O-phosphono-D-ribitol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-07-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       351.246
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0VR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4EWN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0VR  P      P      P  0  1  N  N  N  19.134  17.555  24.767   6.019   0.049  -0.156  P      0VR   1  
0VR  O1P    O1P    O  0  1  N  N  N  20.482  17.884  24.171   6.178   1.121  -1.165  O1P    0VR   2  
0VR  O2P    O2P    O  0  1  N  N  N  18.890  18.349  26.042   6.998  -1.177  -0.518  O2P    0VR   3  
0VR  O3P    O3P    O  0  1  N  N  N  19.187  16.072  25.080   6.395   0.623   1.300  O3P    0VR   4  
0VR  "O5'"  "O5'"  O  0  1  N  N  N  17.952  17.920  23.793   4.494  -0.465  -0.154  "O5'"  0VR   5  
0VR  "C5'"  "C5'"  C  0  1  N  N  N  17.225  16.932  23.112   3.378   0.409   0.030  "C5'"  0VR   6  
0VR  "C4'"  "C4'"  C  0  1  N  N  R  16.153  17.569  22.230   2.081  -0.401  -0.023  "C4'"  0VR   7  
0VR  "O4'"  "O4'"  O  0  1  N  N  N  15.206  18.158  23.038   2.039  -1.305   1.083  "O4'"  0VR   8  
0VR  "C3'"  "C3'"  C  0  1  N  N  S  16.725  18.564  21.229   0.884   0.549   0.049  "C3'"  0VR   9  
0VR  "O3'"  "O3'"  O  0  1  N  N  N  17.767  17.937  20.577   0.926   1.453  -1.057  "O3'"  0VR  10  
0VR  "C2'"  "C2'"  C  0  1  N  N  S  15.757  19.036  20.161  -0.413  -0.261  -0.003  "C2'"  0VR  11  
0VR  "O2'"  "O2'"  O  0  1  N  N  N  14.445  18.747  20.445  -0.455  -1.165   1.103  "O2'"  0VR  12  
0VR  "C1'"  "C1'"  C  0  1  N  N  N  15.843  20.521  19.940  -1.611   0.688   0.068  "C1'"  0VR  13  
0VR  NH     NH     N  0  1  N  N  N  14.648  20.957  19.205  -2.852  -0.087   0.018  NH     0VR  14  
0VR  C1     C1     C  0  1  Y  N  N  12.887  22.391  18.956  -5.269  -0.165  -0.097  C1     0VR  15  
0VR  C2     C2     C  0  1  Y  N  N  13.864  22.105  19.640  -4.079   0.562   0.069  C2     0VR  16  
0VR  C3     C3     C  0  1  Y  N  N  14.373  22.668  20.771  -4.135   1.933   0.284  C3     0VR  17  
0VR  C4     C4     C  0  1  Y  N  N  13.466  23.915  21.193  -5.355   2.575   0.335  C4     0VR  18  
0VR  C5     C5     C  0  1  Y  N  N  12.263  24.134  20.199  -6.532   1.862   0.172  C5     0VR  19  
0VR  C6     C6     C  0  1  Y  N  N  12.134  23.293  19.162  -6.497   0.501  -0.043  C6     0VR  20  
0VR  C7     C7     C  0  1  N  N  N  12.550  21.584  17.742  -5.224  -1.618  -0.333  C7     0VR  21  
0VR  O71    O71    O  0  1  N  N  N  12.521  20.345  17.962  -6.358  -2.291  -0.613  O71    0VR  22  
0VR  O72    O72    O  0  1  N  N  N  12.340  22.307  16.735  -4.165  -2.211  -0.273  O72    0VR  23  
0VR  H1     H1     H  0  1  N  N  N  19.641  18.904  26.219   7.935  -0.940  -0.538  H1     0VR  24  
0VR  H2     H2     H  0  1  N  N  N  20.035  15.725  24.830   6.313  -0.026   2.012  H2     0VR  25  
0VR  H3     H3     H  0  1  N  N  N  16.743  16.268  23.844   3.459   0.903   0.998  H3     0VR  26  
0VR  H4     H4     H  0  1  N  N  N  17.911  16.347  22.482   3.370   1.159  -0.761  H4     0VR  27  
0VR  H5     H5     H  0  1  N  N  N  15.682  16.759  21.653   2.043  -0.965  -0.955  H5     0VR  28  
0VR  H6     H6     H  0  1  N  N  N  14.868  17.515  23.651   2.070  -0.871   1.947  H6     0VR  29  
0VR  H7     H7     H  0  1  N  N  N  17.091  19.442  21.782   0.923   1.113   0.981  H7     0VR  30  
0VR  H8     H8     H  0  1  N  N  N  18.398  17.625  21.215   0.895   1.019  -1.921  H8     0VR  31  
0VR  H9     H9     H  0  1  N  N  N  16.041  18.544  19.219  -0.452  -0.825  -0.935  H9     0VR  32  
0VR  H10    H10    H  0  1  N  N  N  14.351  17.813  20.591  -0.424  -0.732   1.967  H10    0VR  33  
0VR  H11    H11    H  0  1  N  N  N  16.744  20.757  19.355  -1.572   1.252   1.000  H11    0VR  34  
0VR  H12    H12    H  0  1  N  N  N  15.890  21.038  20.910  -1.579   1.378  -0.775  H12    0VR  35  
0VR  H13    H13    H  0  1  N  N  N  14.023  20.176  19.194  -2.818  -1.054  -0.050  H13    0VR  36  
0VR  H14    H14    H  0  1  N  N  N  15.251  22.326  21.299  -3.223   2.496   0.413  H14    0VR  37  
0VR  H15    H15    H  0  1  N  N  N  13.655  24.534  22.057  -5.393   3.642   0.502  H15    0VR  38  
0VR  H16    H16    H  0  1  N  N  N  11.560  24.940  20.349  -7.481   2.375   0.213  H16    0VR  39  
0VR  H17    H17    H  0  1  N  N  N  11.309  23.440  18.481  -7.417  -0.050  -0.169  H17    0VR  40  
0VR  H18    H18    H  0  1  N  N  N  12.283  19.887  17.164  -6.278  -3.243  -0.760  H18    0VR  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0VR  O72    C7     DOUB  N  N   1  
0VR  C7     O71    SING  N  N   2  
0VR  C7     C1     SING  N  N   3  
0VR  C1     C6     DOUB  Y  N   4  
0VR  C1     C2     SING  Y  N   5  
0VR  C6     C5     SING  Y  N   6  
0VR  NH     C2     SING  N  N   7  
0VR  NH     "C1'"  SING  N  N   8  
0VR  C2     C3     DOUB  Y  N   9  
0VR  "C1'"  "C2'"  SING  N  N  10  
0VR  "C2'"  "O2'"  SING  N  N  11  
0VR  "C2'"  "C3'"  SING  N  N  12  
0VR  C5     C4     DOUB  Y  N  13  
0VR  "O3'"  "C3'"  SING  N  N  14  
0VR  C3     C4     SING  Y  N  15  
0VR  "C3'"  "C4'"  SING  N  N  16  
0VR  "C4'"  "O4'"  SING  N  N  17  
0VR  "C4'"  "C5'"  SING  N  N  18  
0VR  "C5'"  "O5'"  SING  N  N  19  
0VR  "O5'"  P      SING  N  N  20  
0VR  O1P    P      DOUB  N  N  21  
0VR  P      O3P    SING  N  N  22  
0VR  P      O2P    SING  N  N  23  
0VR  O2P    H1     SING  N  N  24  
0VR  O3P    H2     SING  N  N  25  
0VR  "C5'"  H3     SING  N  N  26  
0VR  "C5'"  H4     SING  N  N  27  
0VR  "C4'"  H5     SING  N  N  28  
0VR  "O4'"  H6     SING  N  N  29  
0VR  "C3'"  H7     SING  N  N  30  
0VR  "O3'"  H8     SING  N  N  31  
0VR  "C2'"  H9     SING  N  N  32  
0VR  "O2'"  H10    SING  N  N  33  
0VR  "C1'"  H11    SING  N  N  34  
0VR  "C1'"  H12    SING  N  N  35  
0VR  NH     H13    SING  N  N  36  
0VR  C3     H14    SING  N  N  37  
0VR  C4     H15    SING  N  N  38  
0VR  C5     H16    SING  N  N  39  
0VR  C6     H17    SING  N  N  40  
0VR  O71    H18    SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0VR  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC(O)C(O)C(O)CNc1ccccc1C(=O)O"  
0VR  InChI             InChI                 1.03   "InChI=1S/C12H18NO9P/c14-9(11(16)10(15)6-22-23(19,20)21)5-13-8-4-2-1-3-7(8)12(17)18/h1-4,9-11,13-16H,5-6H2,(H,17,18)(H2,19,20,21)/t9-,10+,11-/m0/s1"  
0VR  InChIKey          InChI                 1.03   AULMJMUNCOBRHC-AXFHLTTASA-N  
0VR  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H](CNc1ccccc1C(O)=O)[C@H](O)[C@H](O)CO[P](O)(O)=O"  
0VR  SMILES            CACTVS                3.370  "O[CH](CNc1ccccc1C(O)=O)[CH](O)[CH](O)CO[P](O)(O)=O"  
0VR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1ccc(c(c1)C(=O)O)NC[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O"  
0VR  SMILES            "OpenEye OEToolkits"  1.7.6  "c1ccc(c(c1)C(=O)O)NCC(C(C(COP(=O)(O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0VR  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-[(2-carboxyphenyl)amino]-1-deoxy-5-O-phosphono-D-ribitol"  
0VR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-[[(2S,3S,4R)-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]amino]benzoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0VR  "Create component"  2012-07-13  RCSB  
0VR  "Initial release"   2012-11-30  RCSB  
0VR  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     0VR
_pdbx_chem_comp_synonyms.name        "1-[(2-carboxyphenyl)amino]-1-deoxy-5-O-phosphono-D-ribitol"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
