data_2LR
# 
_chem_comp.id                                    2LR 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-L-leucyl-N-{(1R,2S)-1-hydroxy-4-methyl-1-[(2R)-2-methyloxiran-2-yl]pentan-2-yl}-L-leucinamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H47 N3 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "PHQ-LEU-LEU-LEU-EPOXYKETONE, unbound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        533.700 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2LR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NO9 
_chem_comp.pdbx_subcomponent_list                "PHQ LEU LEU 2LS" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2LR C7  C7  C 0 1 N N N N N N 9.340  -163.407 31.814 -4.398  -0.345 0.636  C1   PHQ 1  
2LR O8  O8  O 0 1 N N N N N N 9.192  -162.208 32.055 -4.411  -0.932 1.700  O1   PHQ 2  
2LR O6  O6  O 0 1 N N N N N N 10.419 -163.845 31.090 -5.556  0.022  0.056  O2   PHQ 3  
2LR C5  C5  C 0 1 N N N N N N 11.501 -162.933 30.953 -6.781  -0.318 0.757  C2   PHQ 4  
2LR C4  C4  C 0 1 Y N N N N N 12.506 -163.393 31.820 -7.966  0.168  -0.037 C3   PHQ 5  
2LR C31 C31 C 0 1 Y N N N N N 13.539 -164.207 31.347 -8.465  1.440  0.174  C4   PHQ 6  
2LR C32 C32 C 0 1 Y N N N N N 14.536 -164.658 32.212 -9.552  1.886  -0.555 C5   PHQ 7  
2LR C1  C1  C 0 1 Y N N N N N 14.511 -164.299 33.559 -10.139 1.060  -1.495 C6   PHQ 8  
2LR C2  C2  C 0 1 Y N N N N N 13.485 -163.487 34.038 -9.640  -0.212 -1.707 C7   PHQ 9  
2LR C3  C3  C 0 1 Y N N N N N 12.489 -163.035 33.172 -8.551  -0.656 -0.981 C8   PHQ 10 
2LR N9  N9  N 0 1 N N N N N N 8.431  -164.300 32.255 -3.224  -0.055 0.041  N    LEU 11 
2LR C10 C10 C 0 1 N N S N N N 7.256  -163.892 33.052 -1.964  -0.448 0.675  CA   LEU 12 
2LR C15 C15 C 0 1 N N N N N N 7.659  -163.868 34.536 -0.859  0.462  0.204  C    LEU 13 
2LR O30 O30 O 0 1 N N N N N N 8.192  -164.848 35.058 -1.100  1.351  -0.585 O    LEU 14 
2LR C11 C11 C 0 1 N N N N N N 6.083  -164.861 32.836 -1.631  -1.893 0.296  CB   LEU 15 
2LR C12 C12 C 0 1 N N N N N N 5.331  -164.489 31.543 -2.689  -2.830 0.882  CG   LEU 16 
2LR C13 C13 C 0 1 N N N N N N 4.607  -165.717 30.959 -2.428  -4.259 0.401  CD1  LEU 17 
2LR C14 C14 C 0 1 N N N N N N 4.320  -163.370 31.833 -2.620  -2.786 2.410  CD2  LEU 18 
2LR N16 N16 N 0 1 N N N N N N 7.402  -162.710 35.172 0.398   0.287  0.658  N    LEU 19 
2LR C17 C17 C 0 1 N N S N N N 7.736  -162.477 36.591 1.492   1.098  0.118  CA   LEU 20 
2LR C22 C22 C 0 1 N N N N N N 6.469  -162.652 37.447 2.782   0.326  0.208  C    LEU 21 
2LR O23 O23 O 0 1 N N N N N N 5.349  -162.532 36.947 2.899   -0.567 1.020  O    LEU 22 
2LR C18 C18 C 0 1 N N N N N N 8.303  -161.046 36.733 1.614   2.391  0.927  CB   LEU 23 
2LR C19 C19 C 0 1 N N N N N N 9.822  -161.014 37.021 2.670   3.295  0.287  CG   LEU 24 
2LR C20 C20 C 0 1 N N N N N N 10.110 -161.481 38.459 2.173   3.772  -1.079 CD1  LEU 25 
2LR C21 C21 C 0 1 N N N N N N 10.614 -161.853 35.992 2.921   4.505  1.189  CD2  LEU 26 
2LR C26 C26 C 0 1 N N N N N N 5.812  -164.552 40.360 5.628   -0.228 -2.005 C26  2LS 27 
2LR C28 C28 C 0 1 N N N N N N 5.209  -166.981 40.313 5.194   -0.825 -4.392 C28  2LS 28 
2LR C33 C33 C 0 1 N N R N N N 5.529  -162.021 40.767 6.032   0.413  0.376  C33  2LS 29 
2LR C34 C34 C 0 1 N N R N N N 5.113  -160.756 39.968 7.056   -0.652 0.774  C34  2LS 30 
2LR C45 C45 C 0 1 N N N N N N 4.178  -160.434 39.031 7.285   -1.768 -0.247 C45  2LS 31 
2LR O40 O40 O 0 1 N N N N N N 6.177  -160.089 39.295 7.168   -0.983 2.160  O40  2LS 32 
2LR C35 C35 C 0 1 N N N N N N 5.577  -159.334 40.302 8.247   -0.212 1.628  C35  2LS 33 
2LR O43 O43 O 0 1 N N N N N N 6.792  -161.845 41.437 5.349   0.877  1.542  O43  2LS 34 
2LR C25 C25 C 0 1 N N S N N N 5.598  -163.163 39.720 5.022   -0.192 -0.601 C25  2LS 35 
2LR C27 C27 C 0 1 N N N N N N 4.706  -165.568 39.989 4.658   -0.923 -2.962 C27  2LS 36 
2LR C29 C29 C 0 1 N N N N N N 4.297  -165.518 38.503 4.520   -2.395 -2.569 C29  2LS 37 
2LR N24 N24 N 0 1 N N N N N N 6.693  -162.938 38.748 3.806   0.626  -0.615 N24  2LS 38 
2LR H1  H1  H 0 1 N N N N N N 11.865 -162.925 29.915 -6.843  -1.400 0.877  H21  PHQ 39 
2LR H2  H2  H 0 1 N N N N N N 11.185 -161.919 31.238 -6.782  0.157  1.738  H22  PHQ 40 
2LR H47 H47 H 0 1 N N N N N N 13.565 -164.489 30.305 -8.006  2.085  0.908  H41  PHQ 41 
2LR H46 H46 H 0 1 N N N N N N 15.330 -165.287 31.837 -9.942  2.879  -0.390 H51  PHQ 42 
2LR H45 H45 H 0 1 N N N N N N 15.283 -164.649 34.228 -10.989 1.408  -2.064 H61  PHQ 43 
2LR H44 H44 H 0 1 N N N N N N 13.461 -163.207 35.081 -10.100 -0.857 -2.441 H71  PHQ 44 
2LR H43 H43 H 0 1 N N N N N N 11.698 -162.403 33.549 -8.158  -1.648 -1.149 H81  PHQ 45 
2LR H42 H42 H 0 1 N N N N N N 8.556  -165.268 32.036 -3.214  0.415  -0.808 H    LEU 46 
2LR H3  H3  H 0 1 N N N N N N 6.941  -162.881 32.754 -2.062  -0.370 1.758  HA   LEU 47 
2LR H36 H36 H 0 1 N N N N N N 5.394  -164.797 33.691 -1.621  -1.990 -0.789 HB2  LEU 48 
2LR H37 H37 H 0 1 N N N N N N 6.468  -165.888 32.752 -0.652  -2.157 0.695  HB3  LEU 49 
2LR H38 H38 H 0 1 N N N N N N 6.060  -164.125 30.804 -3.679  -2.511 0.554  HG   LEU 50 
2LR H4  H4  H 0 1 N N N N N N 5.339  -166.512 30.755 -3.182  -4.926 0.818  HD11 LEU 51 
2LR H5  H5  H 0 1 N N N N N N 3.862  -166.081 31.682 -2.477  -4.290 -0.688 HD12 LEU 52 
2LR H6  H6  H 0 1 N N N N N N 4.102  -165.434 30.023 -1.439  -4.577 0.729  HD13 LEU 53 
2LR H39 H39 H 0 1 N N N N N N 4.846  -162.498 32.249 -1.630  -3.105 2.738  HD21 LEU 54 
2LR H40 H40 H 0 1 N N N N N N 3.815  -163.082 30.899 -2.806  -1.768 2.753  HD22 LEU 55 
2LR H41 H41 H 0 1 N N N N N N 3.574  -163.729 32.558 -3.374  -3.454 2.827  HD23 LEU 56 
2LR H35 H35 H 0 1 N N N N N N 6.964  -161.972 34.659 0.578   -0.376 1.343  H    LEU 57 
2LR H7  H7  H 0 1 N N N N N N 8.497  -163.199 36.922 1.285   1.340  -0.924 HA   LEU 58 
2LR H32 H32 H 0 1 N N N N N N 8.114  -160.501 35.796 0.654   2.906  0.937  HB2  LEU 59 
2LR H33 H33 H 0 1 N N N N N N 7.780  -160.544 37.561 1.910   2.154  1.949  HB3  LEU 60 
2LR H34 H34 H 0 1 N N N N N N 10.158 -159.970 36.932 3.598   2.737  0.161  HG   LEU 61 
2LR H8  H8  H 0 1 N N N N N N 9.534  -160.867 39.167 2.952   4.361  -1.564 HD11 LEU 62 
2LR H9  H9  H 0 1 N N N N N N 9.818  -162.536 38.567 1.930   2.909  -1.699 HD12 LEU 63 
2LR H10 H10 H 0 1 N N N N N N 11.184 -161.374 38.671 1.282   4.387  -0.947 HD13 LEU 64 
2LR H11 H11 H 0 1 N N N N N N 11.687 -161.806 36.228 3.276   4.164  2.162  HD21 LEU 65 
2LR H12 H12 H 0 1 N N N N N N 10.275 -162.899 36.033 3.674   5.148  0.733  HD22 LEU 66 
2LR H13 H13 H 0 1 N N N N N N 10.443 -161.451 34.982 1.994   5.063  1.315  HD23 LEU 67 
2LR H14 H14 H 0 1 N N N N N N 6.780  -164.949 40.020 5.810   0.791  -2.349 H14  2LS 68 
2LR H15 H15 H 0 1 N N N N N N 5.827  -164.435 41.454 6.570   -0.776 -1.981 H15  2LS 69 
2LR H16 H16 H 0 1 N N N N N N 5.505  -167.032 41.371 4.462   -1.243 -5.084 H16  2LS 70 
2LR H17 H17 H 0 1 N N N N N N 4.407  -167.709 40.121 5.374   0.220  -4.642 H17  2LS 71 
2LR H18 H18 H 0 1 N N N N N N 6.076  -167.216 39.678 6.127   -1.383 -4.469 H18  2LS 72 
2LR H19 H19 H 0 1 N N N N N N 4.739  -162.255 41.496 6.544   1.248  -0.102 H19  2LS 73 
2LR H20 H20 H 0 1 N N N N N N 3.204  -160.853 39.325 7.857   -2.572 0.215  H20  2LS 74 
2LR H21 H21 H 0 1 N N N N N N 4.098  -159.340 38.954 6.323   -2.154 -0.585 H21  2LS 75 
2LR H22 H22 H 0 1 N N N N N N 4.477  -160.849 38.057 7.837   -1.373 -1.100 H22  2LS 76 
2LR H23 H23 H 0 1 N N N N N N 6.115  -159.131 41.240 9.200   -0.716 1.468  H23  2LS 77 
2LR H24 H24 H 0 1 N N N N N N 4.946  -158.470 40.047 8.309   0.839  1.911  H24  2LS 78 
2LR H25 H25 H 0 1 N N N N N N 6.719  -161.141 42.071 4.870   0.185  2.018  H25  2LS 79 
2LR H26 H26 H 0 1 N N N N N N 4.641  -163.183 39.177 4.774   -1.205 -0.287 H26  2LS 80 
2LR H27 H27 H 0 1 N N N N N N 3.819  -165.360 40.605 3.683   -0.439 -2.906 H27  2LS 81 
2LR H28 H28 H 0 1 N N N N N N 3.934  -164.510 38.256 5.496   -2.879 -2.625 H28  2LS 82 
2LR H29 H29 H 0 1 N N N N N N 5.168  -165.758 37.875 4.139   -2.465 -1.550 H29  2LS 83 
2LR H30 H30 H 0 1 N N N N N N 3.498  -166.251 38.318 3.829   -2.891 -3.250 H30  2LS 84 
2LR H31 H31 H 0 1 N N N N N N 7.638  -163.001 39.069 3.739   1.385  -1.216 H31  2LS 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2LR C5  O6  SING N N 1  
2LR C5  C4  SING N N 2  
2LR C13 C12 SING N N 3  
2LR O6  C7  SING N N 4  
2LR C31 C4  DOUB Y N 5  
2LR C31 C32 SING Y N 6  
2LR C12 C14 SING N N 7  
2LR C12 C11 SING N N 8  
2LR C7  O8  DOUB N N 9  
2LR C7  N9  SING N N 10 
2LR C4  C3  SING Y N 11 
2LR C32 C1  DOUB Y N 12 
2LR N9  C10 SING N N 13 
2LR C11 C10 SING N N 14 
2LR C10 C15 SING N N 15 
2LR C3  C2  DOUB Y N 16 
2LR C1  C2  SING Y N 17 
2LR C15 O30 DOUB N N 18 
2LR C15 N16 SING N N 19 
2LR N16 C17 SING N N 20 
2LR C21 C19 SING N N 21 
2LR C17 C18 SING N N 22 
2LR C17 C22 SING N N 23 
2LR C18 C19 SING N N 24 
2LR O23 C22 DOUB N N 25 
2LR C19 C20 SING N N 26 
2LR C22 N24 SING N N 27 
2LR C29 C27 SING N N 28 
2LR N24 C25 SING N N 29 
2LR C45 C34 SING N N 30 
2LR O40 C34 SING N N 31 
2LR O40 C35 SING N N 32 
2LR C25 C26 SING N N 33 
2LR C25 C33 SING N N 34 
2LR C34 C35 SING N N 35 
2LR C34 C33 SING N N 36 
2LR C27 C28 SING N N 37 
2LR C27 C26 SING N N 38 
2LR C33 O43 SING N N 39 
2LR C5  H1  SING N N 40 
2LR C5  H2  SING N N 41 
2LR C10 H3  SING N N 42 
2LR C13 H4  SING N N 43 
2LR C13 H5  SING N N 44 
2LR C13 H6  SING N N 45 
2LR C17 H7  SING N N 46 
2LR C20 H8  SING N N 47 
2LR C20 H9  SING N N 48 
2LR C20 H10 SING N N 49 
2LR C21 H11 SING N N 50 
2LR C21 H12 SING N N 51 
2LR C21 H13 SING N N 52 
2LR C26 H14 SING N N 53 
2LR C26 H15 SING N N 54 
2LR C28 H16 SING N N 55 
2LR C28 H17 SING N N 56 
2LR C28 H18 SING N N 57 
2LR C33 H19 SING N N 58 
2LR C45 H20 SING N N 59 
2LR C45 H21 SING N N 60 
2LR C45 H22 SING N N 61 
2LR C35 H23 SING N N 62 
2LR C35 H24 SING N N 63 
2LR O43 H25 SING N N 64 
2LR C25 H26 SING N N 65 
2LR C27 H27 SING N N 66 
2LR C29 H28 SING N N 67 
2LR C29 H29 SING N N 68 
2LR C29 H30 SING N N 69 
2LR N24 H31 SING N N 70 
2LR C18 H32 SING N N 71 
2LR C18 H33 SING N N 72 
2LR C19 H34 SING N N 73 
2LR N16 H35 SING N N 74 
2LR C11 H36 SING N N 75 
2LR C11 H37 SING N N 76 
2LR C12 H38 SING N N 77 
2LR C14 H39 SING N N 78 
2LR C14 H40 SING N N 79 
2LR C14 H41 SING N N 80 
2LR N9  H42 SING N N 81 
2LR C3  H43 SING N N 82 
2LR C2  H44 SING N N 83 
2LR C1  H45 SING N N 84 
2LR C32 H46 SING N N 85 
2LR C31 H47 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2LR SMILES           ACDLabs              12.01 "O=C(OCc1ccccc1)NC(C(=O)NC(C(=O)NC(C(O)C2(OC2)C)CC(C)C)CC(C)C)CC(C)C"                                                                                                                                                            
2LR InChI            InChI                1.03  "InChI=1S/C29H47N3O6/c1-18(2)13-22(25(33)29(7)17-38-29)30-26(34)23(14-19(3)4)31-27(35)24(15-20(5)6)32-28(36)37-16-21-11-9-8-10-12-21/h8-12,18-20,22-25,33H,13-17H2,1-7H3,(H,30,34)(H,31,35)(H,32,36)/t22-,23-,24-,25+,29+/m0/s1" 
2LR InChIKey         InChI                1.03  HBAZSHAOSQCUFB-ABJYOQOBSA-N                                                                                                                                                                                                      
2LR SMILES_CANONICAL CACTVS               3.370 "CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)[C@@H](O)[C@@]2(C)CO2"                                                                                                                                       
2LR SMILES           CACTVS               3.370 "CC(C)C[CH](NC(=O)[CH](CC(C)C)NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1)[CH](O)[C]2(C)CO2"                                                                                                                                              
2LR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H]([C@H]([C@]1(CO1)C)O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                                        
2LR SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(C1(CO1)C)O)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)OCc2ccccc2"                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2LR "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-L-leucyl-N-{(1R,2S)-1-hydroxy-4-methyl-1-[(2R)-2-methyloxiran-2-yl]pentan-2-yl}-L-leucinamide"                                                                                      
2LR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-4-methyl-1-[[(2S)-4-methyl-1-[[(1R,2S)-4-methyl-1-[(2R)-2-methyloxiran-2-yl]-1-oxidanyl-pentan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2LR "Create component" 2013-11-28 RCSB 
2LR "Initial release"  2014-02-12 RCSB 
2LR "Modify synonyms"  2021-03-13 RCSB 
2LR "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      2LR 
_pdbx_chem_comp_synonyms.name         "PHQ-LEU-LEU-LEU-EPOXYKETONE, unbound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2LR 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C33 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG1 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
