data_5PR
#

_chem_comp.id                                   5PR
_chem_comp.name                                 "5-hydroxy-4-(hydroxymethyl)-6-methylpyridine-3-carboxylic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H9 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-Pyridoxic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-08-09
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       183.161
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5PR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ALI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5PR  N1    N1    N  0  1  Y  N  N  -26.398  -12.374  -20.604  -1.349   1.832  -0.205  N1    5PR   1  
5PR  C2    C2    C  0  1  Y  N  N  -25.134  -11.895  -20.749  -2.063   0.733  -0.051  C2    5PR   2  
5PR  C3    C3    C  0  1  Y  N  N  -24.220  -12.093  -19.687  -1.449  -0.495   0.161  C3    5PR   3  
5PR  O3    O3    O  0  1  N  N  N  -22.969  -11.636  -19.872  -2.196  -1.619   0.318  O3    5PR   4  
5PR  C4    C4    C  0  1  Y  N  N  -24.557  -12.780  -18.446  -0.063  -0.559   0.210  C4    5PR   5  
5PR  C5    C5    C  0  1  Y  N  N  -25.859  -13.237  -18.420   0.662   0.627   0.043  C5    5PR   6  
5PR  C6    C6    C  0  1  Y  N  N  -26.776  -13.030  -19.508  -0.033   1.819  -0.166  C6    5PR   7  
5PR  C2A   C2A   C  0  1  N  N  N  -24.700  -11.230  -22.095  -3.567   0.811  -0.106  C2A   5PR   8  
5PR  C4A   C4A   C  0  1  N  N  N  -23.532  -12.992  -17.212   0.642  -1.871   0.439  C4A   5PR   9  
5PR  O4A   O4A   O  0  1  N  N  N  -22.396  -12.782  -18.138   1.054  -2.416  -0.816  O4A   5PR  10  
5PR  O51   O51   O  0  1  N  N  N  -25.891  -13.356  -16.054   2.822   1.776   0.043  O51   5PR  11  
5PR  O52   O52   O  0  1  N  N  N  -27.365  -14.521  -17.136   2.736  -0.438   0.162  O52   5PR  12  
5PR  C5A   C5A   C  0  1  N  N  N  -26.313  -13.870  -17.112   2.138   0.616   0.086  C5A   5PR  13  
5PR  HO3   HO3   H  0  1  N  N  N  -22.446  -11.822  -19.101  -2.388  -2.083  -0.509  HO3   5PR  14  
5PR  H6    H6    H  0  1  N  N  N  -27.784  -13.411  -19.436   0.514   2.741  -0.297  H6    5PR  15  
5PR  H2A   H2A   H  0  1  N  N  N  -25.545  -11.241  -22.799  -3.901   0.669  -1.134  H2A   5PR  16  
5PR  H2AA  H2AA  H  0  0  N  N  N  -24.392  -10.191  -21.908  -3.994   0.033   0.525  H2AA  5PR  17  
5PR  H2AB  H2AB  H  0  0  N  N  N  -23.857  -11.790  -22.526  -3.893   1.788   0.250  H2AB  5PR  18  
5PR  H4A   H4A   H  0  1  N  N  N  -23.620  -12.291  -16.369   1.516  -1.709   1.070  H4A   5PR  19  
5PR  H4AA  H4AA  H  0  0  N  N  N  -23.575  -13.961  -16.692  -0.037  -2.568   0.932  H4AA  5PR  20  
5PR  HO4A  HO4A  H  0  0  N  N  N  -21.579  -12.853  -17.659   1.516  -3.262  -0.745  HO4A  5PR  21  
5PR  HO51  HO51  H  0  0  N  N  N  -26.491  -13.553  -15.344   3.786   1.719   0.074  HO51  5PR  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5PR  N1   C2    DOUB  Y  N   1  
5PR  N1   C6    SING  Y  N   2  
5PR  C2   C3    SING  Y  N   3  
5PR  C2   C2A   SING  N  N   4  
5PR  C3   O3    SING  N  N   5  
5PR  C3   C4    DOUB  Y  N   6  
5PR  C4   C5    SING  Y  N   7  
5PR  C4   C4A   SING  N  N   8  
5PR  C5   C6    DOUB  Y  N   9  
5PR  C5   C5A   SING  N  N  10  
5PR  C4A  O4A   SING  N  N  11  
5PR  O51  C5A   SING  N  N  12  
5PR  O52  C5A   DOUB  N  N  13  
5PR  O3   HO3   SING  N  N  14  
5PR  C6   H6    SING  N  N  15  
5PR  C2A  H2A   SING  N  N  16  
5PR  C2A  H2AA  SING  N  N  17  
5PR  C2A  H2AB  SING  N  N  18  
5PR  C4A  H4A   SING  N  N  19  
5PR  C4A  H4AA  SING  N  N  20  
5PR  O4A  HO4A  SING  N  N  21  
5PR  O51  HO51  SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5PR  SMILES            ACDLabs               12.01  "O=C(O)c1cnc(c(O)c1CO)C"  
5PR  SMILES_CANONICAL  CACTVS                3.370  "Cc1ncc(C(O)=O)c(CO)c1O"  
5PR  SMILES            CACTVS                3.370  "Cc1ncc(C(O)=O)c(CO)c1O"  
5PR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "Cc1c(c(c(cn1)C(=O)O)CO)O"  
5PR  SMILES            "OpenEye OEToolkits"  1.7.0  "Cc1c(c(c(cn1)C(=O)O)CO)O"  
5PR  InChI             InChI                 1.03   "InChI=1S/C8H9NO4/c1-4-7(11)6(3-10)5(2-9-4)8(12)13/h2,10-11H,3H2,1H3,(H,12,13)"  
5PR  InChIKey          InChI                 1.03   VJZTVPVXKYQRJZ-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5PR  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-hydroxy-4-(hydroxymethyl)-6-methylpyridine-3-carboxylic acid"  
5PR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "5-hydroxy-4-(hydroxymethyl)-6-methyl-pyridine-3-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5PR  "Create component"      2010-08-09  PDBJ  
5PR  "Modify aromatic_flag"  2011-06-04  RCSB  
5PR  "Modify descriptor"     2011-06-04  RCSB  
5PR  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5PR
_pdbx_chem_comp_synonyms.name        "5-Pyridoxic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
