data_5VR
# 
_chem_comp.id                                    5VR 
_chem_comp.name                                  "[[(3~{R},6~{S})-6-(acetamidocarbamoyl)-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H16 N4 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.311 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5VR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FA7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5VR OAL O1  O 0 1 N N N N N N 19.732 -5.919 -27.391 -5.295 -1.572 -0.044 OAL 5VR 1  
5VR SAI S1  S 0 1 N N N N N N 20.172 -5.607 -26.172 -5.166 -0.156 -0.046 SAI 5VR 2  
5VR OAJ O2  O 0 1 N N N N N N 21.399 -6.230 -25.968 -5.984 0.697  -0.835 OAJ 5VR 3  
5VR OAK O3  O 0 1 N N N N N N 19.289 -5.903 -25.149 -5.343 0.294  1.397  OAK 5VR 4  
5VR OAH O4  O 0 1 N N N N N N 20.423 -3.974 -26.161 -3.727 0.143  -0.439 OAH 5VR 5  
5VR NAG N1  N 0 1 N N N N N N 20.581 -3.503 -25.002 -2.749 -0.783 0.132  NAG 5VR 6  
5VR CAE C1  C 0 1 N N R N N N 21.420 -2.246 -25.016 -1.385 -0.434 -0.288 CAE 5VR 7  
5VR CAF C2  C 0 1 N N N N N N 22.758 -2.521 -25.666 -0.529 -1.701 -0.347 CAF 5VR 8  
5VR CB  C3  C 0 1 N N N N N N 23.587 -3.472 -24.820 0.883  -1.343 -0.817 CB  5VR 9  
5VR CAD C4  C 0 1 N N N N N N 21.638 -1.668 -23.633 -0.774 0.544  0.721  CAD 5VR 10 
5VR N   N2  N 0 1 N N N N N N 22.313 -2.723 -22.919 0.630  0.780  0.359  N   5VR 11 
5VR CAM C5  C 0 1 N N N N N N 21.664 -3.621 -22.044 1.093  2.035  0.188  CAM 5VR 12 
5VR OAN O5  O 0 1 N N N N N N 22.150 -4.647 -21.880 0.329  2.975  0.237  OAN 5VR 13 
5VR CA  C6  C 0 1 N N S N N N 23.674 -2.985 -23.373 1.520  -0.376 0.186  CA  5VR 14 
5VR C   C7  C 0 1 N N N N N N 24.674 -1.824 -23.299 2.855  0.088  -0.337 C   5VR 15 
5VR O   O6  O 0 1 N N N N N N 24.343 -0.715 -23.027 2.905  0.895  -1.241 O   5VR 16 
5VR NAQ N3  N 0 1 N N N N N N 25.954 -2.152 -23.537 3.994  -0.394 0.199  NAQ 5VR 17 
5VR NAR N4  N 0 1 N N N N N N 26.994 -1.250 -23.554 5.235  0.036  -0.287 NAR 5VR 18 
5VR CAS C8  C 0 1 N N N N N N 27.651 -0.868 -22.453 6.373  -0.446 0.249  CAS 5VR 19 
5VR OAU O7  O 0 1 N N N N N N 27.335 -1.227 -21.361 6.323  -1.253 1.153  OAU 5VR 20 
5VR CAT C9  C 0 1 N N N N N N 28.776 0.088  -22.678 7.708  0.018  -0.275 CAT 5VR 21 
5VR HAG H1  H 0 1 N N N N N N 19.684 -3.289 -24.615 -2.821 -0.811 1.138  HAG 5VR 22 
5VR HAE H2  H 0 1 N N N N N N 20.895 -1.492 -25.621 -1.416 0.032  -1.273 HAE 5VR 23 
5VR HB4 H3  H 0 1 N N N N N N 22.592 -2.971 -26.656 -0.479 -2.152 0.644  HB4 5VR 24 
5VR HAF H4  H 0 1 N N N N N N 23.304 -1.573 -25.782 -0.975 -2.408 -1.046 HAF 5VR 25 
5VR HB2 H5  H 0 1 N N N N N N 23.120 -4.468 -24.837 1.486  -2.249 -0.881 HB2 5VR 26 
5VR HB1 H6  H 0 1 N N N N N N 24.602 -3.535 -25.240 0.831  -0.869 -1.797 HB1 5VR 27 
5VR HAD H7  H 0 1 N N N N N N 22.264 -0.765 -23.680 -1.322 1.485  0.695  HAD 5VR 28 
5VR HB3 H8  H 0 1 N N N N N N 20.678 -1.424 -23.155 -0.826 0.116  1.722  HB3 5VR 29 
5VR H1  H9  H 0 1 N N N N N N 20.744 -3.352 -21.547 2.145  2.202  0.007  H1  5VR 30 
5VR HA  H10 H 0 1 N N N N N N 24.085 -3.810 -22.773 1.658  -0.879 1.143  HA  5VR 31 
5VR HAQ H11 H 0 1 N N N N N N 26.166 -3.113 -23.713 3.954  -1.040 0.922  HAQ 5VR 32 
5VR HAR H12 H 0 1 N N N N N N 27.272 -0.861 -24.432 5.274  0.682  -1.011 HAR 5VR 33 
5VR HAT H13 H 0 1 N N N N N N 29.217 0.370  -21.711 7.553  0.737  -1.079 HAT 5VR 34 
5VR HB6 H14 H 0 1 N N N N N N 29.543 -0.390 -23.305 8.270  0.490  0.531  HB6 5VR 35 
5VR HB5 H15 H 0 1 N N N N N N 28.397 0.988  -23.184 8.267  -0.838 -0.654 HB5 5VR 36 
5VR H2  H16 H 0 1 N N N N N N 18.501 -6.289 -25.512 -6.231 0.147  1.749  H2  5VR 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5VR OAL SAI DOUB N N 1  
5VR SAI OAH SING N N 2  
5VR SAI OAJ DOUB N N 3  
5VR SAI OAK SING N N 4  
5VR OAH NAG SING N N 5  
5VR CAF CAE SING N N 6  
5VR CAF CB  SING N N 7  
5VR CAE NAG SING N N 8  
5VR CAE CAD SING N N 9  
5VR CB  CA  SING N N 10 
5VR CAD N   SING N N 11 
5VR NAR NAQ SING N N 12 
5VR NAR CAS SING N N 13 
5VR NAQ C   SING N N 14 
5VR CA  C   SING N N 15 
5VR CA  N   SING N N 16 
5VR C   O   DOUB N N 17 
5VR N   CAM SING N N 18 
5VR CAT CAS SING N N 19 
5VR CAS OAU DOUB N N 20 
5VR CAM OAN DOUB N N 21 
5VR NAG HAG SING N N 22 
5VR CAE HAE SING N N 23 
5VR CAF HB4 SING N N 24 
5VR CAF HAF SING N N 25 
5VR CB  HB2 SING N N 26 
5VR CB  HB1 SING N N 27 
5VR CAD HAD SING N N 28 
5VR CAD HB3 SING N N 29 
5VR CAM H1  SING N N 30 
5VR CA  HA  SING N N 31 
5VR NAQ HAQ SING N N 32 
5VR NAR HAR SING N N 33 
5VR CAT HAT SING N N 34 
5VR CAT HB6 SING N N 35 
5VR CAT HB5 SING N N 36 
5VR OAK H2  SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5VR InChI            InChI                1.03  "InChI=1S/C9H16N4O7S/c1-6(15)10-11-9(16)8-3-2-7(4-13(8)5-14)12-20-21(17,18)19/h5,7-8,12H,2-4H2,1H3,(H,10,15)(H,11,16)(H,17,18,19)/t7-,8+/m1/s1" 
5VR InChIKey         InChI                1.03  XVXACCGCTLPGSZ-SFYZADRCSA-N                                                                                                                     
5VR SMILES_CANONICAL CACTVS               3.385 "CC(=O)NNC(=O)[C@@H]1CC[C@H](CN1C=O)NO[S](O)(=O)=O"                                                                                             
5VR SMILES           CACTVS               3.385 "CC(=O)NNC(=O)[CH]1CC[CH](CN1C=O)NO[S](O)(=O)=O"                                                                                                
5VR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(=O)NNC(=O)[C@@H]1CC[C@H](CN1C=O)NOS(=O)(=O)O"                                                                                               
5VR SMILES           "OpenEye OEToolkits" 2.0.4 "CC(=O)NNC(=O)C1CCC(CN1C=O)NOS(=O)(=O)O"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           5VR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "[[(3~{R},6~{S})-6-(acetamidocarbamoyl)-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5VR "Create component" 2015-12-11 RCSB 
5VR "Initial release"  2016-01-20 RCSB 
5VR "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5VR 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAM 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
