data_8LR
# 
_chem_comp.id                                    8LR 
_chem_comp.name                                  "2-hydroxyethyl alpha-D-mannopyranoside" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C8 H16 O7" 
_chem_comp.mon_nstd_parent_comp_id               MAN 
_chem_comp.pdbx_synonyms                         "2-hydroxyethyl alpha-D-mannoside; 2-hydroxyethyl D-mannoside; 2-hydroxyethyl mannoside" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        224.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8LR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CZS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 8LR "2-hydroxyethyl alpha-D-mannoside" PDB ? 
2 8LR "2-hydroxyethyl D-mannoside"       PDB ? 
3 8LR "2-hydroxyethyl mannoside"         PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8LR OAF  OAF  O 0 1 N N N N N N -31.570 -81.577 11.263 3.372  -0.196 -1.557 OAF  8LR 1  
8LR CAG  CAG  C 0 1 N N N N N N -32.138 -80.285 11.488 3.615  -1.040 -0.430 CAG  8LR 2  
8LR CAH  CAH  C 0 1 N N N N N N -33.389 -80.200 10.596 2.566  -0.764 0.649  CAH  8LR 3  
8LR O1   O1   O 0 1 N N N N N N -33.648 -78.826 10.249 1.275  -1.141 0.166  O1   8LR 4  
8LR C1   C1   C 0 1 N N S N N N -34.981 -78.667 9.827  0.217  -0.923 1.102  C1   8LR 5  
8LR O5   O5   O 0 1 N N N N N N -35.882 -79.021 10.954 0.001  0.481  1.258  O5   8LR 6  
8LR C5   C5   C 0 1 N N R N N N -35.731 -78.066 12.066 -0.336 1.158  0.045  C5   8LR 7  
8LR C6   C6   C 0 1 N N N N N N -36.705 -78.443 13.170 -0.516 2.651  0.327  C6   8LR 8  
8LR O6   O6   O 0 1 N N N N N N -37.995 -78.603 12.610 0.733  3.212  0.738  O6   8LR 9  
8LR C4   C4   C 0 1 N N S N N N -35.947 -76.643 11.623 -1.640 0.583  -0.513 C4   8LR 10 
8LR O4   O4   O 0 1 N N N N N N -35.610 -75.761 12.716 -1.949 1.218  -1.756 O4   8LR 11 
8LR C3   C3   C 0 1 N N S N N N -35.080 -76.293 10.459 -1.472 -0.923 -0.736 C3   8LR 12 
8LR O3   O3   O 0 1 N N N N N N -35.409 -74.947 9.951  -2.707 -1.481 -1.188 O3   8LR 13 
8LR C2   C2   C 0 1 N N S N N N -35.211 -77.253 9.359  -1.065 -1.581 0.586  C2   8LR 14 
8LR O2   O2   O 0 1 N N N N N N -36.553 -77.202 8.804  -2.109 -1.409 1.546  O2   8LR 15 
8LR HAG1 HAG1 H 0 0 N N N N N N -32.416 -80.171 12.546 3.553  -2.084 -0.738 HAG1 8LR 16 
8LR HAG2 HAG2 H 0 0 N N N N N N -31.419 -79.500 11.211 4.609  -0.837 -0.031 HAG2 8LR 17 
8LR HAH1 HAH1 H 0 0 N N N N N N -33.224 -80.784 9.678  2.802  -1.343 1.542  HAH1 8LR 18 
8LR HAH2 HAH2 H 0 0 N N N N N N -34.254 -80.609 11.140 2.566  0.298  0.894  HAH2 8LR 19 
8LR H1   H1   H 0 1 N N N N N N -35.187 -79.347 8.987  0.488  -1.358 2.064  H1   8LR 20 
8LR H2   H2   H 0 1 N N N N N N -34.478 -77.014 8.575  -0.889 -2.645 0.425  H2   8LR 21 
8LR H5   H5   H 0 1 N N N N N N -34.710 -78.151 12.467 0.463  1.019  -0.683 H5   8LR 22 
8LR H61  H61C H 0 1 N N N N N N -36.386 -79.386 13.637 -0.859 3.153  -0.578 H61  8LR 23 
8LR H62  H62C H 0 1 N N N N N N -36.728 -77.647 13.929 -1.253 2.785  1.118  H62  8LR 24 
8LR H4   H4   H 0 1 N N N N N N -37.002 -76.509 11.344 -2.449 0.759  0.196  H4   8LR 25 
8LR HO6  H6   H 0 1 N Y N N N N -38.611 -78.839 13.294 0.693  4.158  0.934  HO6  8LR 26 
8LR HO4  HA   H 0 1 N Y N N N N -35.742 -74.859 12.448 -2.765 0.901  -2.167 HO4  8LR 27 
8LR H3   H3   H 0 1 N N N N N N -34.034 -76.290 10.798 -0.698 -1.097 -1.484 H3   8LR 28 
8LR HO3  HB   H 0 1 N Y N N N N -34.849 -74.741 9.212  -2.673 -2.434 -1.349 HO3  8LR 29 
8LR HO2  HC   H 0 1 N Y N N N N -36.736 -76.322 8.497  -1.917 -1.798 2.411  HO2  8LR 30 
8LR HAF  HAF  H 0 1 N N N N N N -30.790 -81.677 11.796 4.001  -0.317 -2.282 HAF  8LR 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8LR OAF CAG  SING N N 1  
8LR CAG CAH  SING N N 2  
8LR CAH O1   SING N N 3  
8LR O1  C1   SING N N 4  
8LR C1  O5   SING N N 5  
8LR C1  C2   SING N N 6  
8LR O5  C5   SING N N 7  
8LR C5  C6   SING N N 8  
8LR C5  C4   SING N N 9  
8LR C6  O6   SING N N 10 
8LR C4  O4   SING N N 11 
8LR C4  C3   SING N N 12 
8LR C3  O3   SING N N 13 
8LR C3  C2   SING N N 14 
8LR C2  O2   SING N N 15 
8LR CAG HAG1 SING N N 16 
8LR CAG HAG2 SING N N 17 
8LR CAH HAH1 SING N N 18 
8LR CAH HAH2 SING N N 19 
8LR C1  H1   SING N N 20 
8LR C2  H2   SING N N 21 
8LR C5  H5   SING N N 22 
8LR C6  H61  SING N N 23 
8LR C6  H62  SING N N 24 
8LR C4  H4   SING N N 25 
8LR O6  HO6  SING N N 26 
8LR O4  HO4  SING N N 27 
8LR C3  H3   SING N N 28 
8LR O3  HO3  SING N N 29 
8LR O2  HO2  SING N N 30 
8LR OAF HAF  SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8LR SMILES           ACDLabs              12.01 "O(CCO)C1OC(C(O)C(O)C1O)CO"                                                                  
8LR InChI            InChI                1.03  "InChI=1S/C8H16O7/c9-1-2-14-8-7(13)6(12)5(11)4(3-10)15-8/h4-13H,1-3H2/t4-,5-,6+,7+,8+/m1/s1" 
8LR InChIKey         InChI                1.03  SMORULFPMBCEPX-HEIBUPTGSA-N                                                                  
8LR SMILES_CANONICAL CACTVS               3.385 "OCCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O"                                              
8LR SMILES           CACTVS               3.385 "OCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"                                                     
8LR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C(CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)O"                                          
8LR SMILES           "OpenEye OEToolkits" 1.7.6 "C(COC1C(C(C(C(O1)CO)O)O)O)O"                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8LR "SYSTEMATIC NAME" ACDLabs              12.01 "2-hydroxyethyl alpha-D-mannopyranoside"                                    
8LR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3S,4S,5S,6R)-2-(2-hydroxyethyloxy)-6-(hydroxymethyl)oxane-3,4,5-triol" 
# 
_pdbx_chem_comp_related.comp_id             8LR 
_pdbx_chem_comp_related.related_comp_id     MAN 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  8LR C1  MAN C1  "Carbohydrate core" 
2  8LR C2  MAN C2  "Carbohydrate core" 
3  8LR C3  MAN C3  "Carbohydrate core" 
4  8LR C4  MAN C4  "Carbohydrate core" 
5  8LR C5  MAN C5  "Carbohydrate core" 
6  8LR C6  MAN C6  "Carbohydrate core" 
7  8LR O1  MAN O1  "Carbohydrate core" 
8  8LR O2  MAN O2  "Carbohydrate core" 
9  8LR O3  MAN O3  "Carbohydrate core" 
10 8LR O4  MAN O4  "Carbohydrate core" 
11 8LR O5  MAN O5  "Carbohydrate core" 
12 8LR O6  MAN O6  "Carbohydrate core" 
13 8LR H1  MAN H1  "Carbohydrate core" 
14 8LR H2  MAN H2  "Carbohydrate core" 
15 8LR H3  MAN H3  "Carbohydrate core" 
16 8LR H4  MAN H4  "Carbohydrate core" 
17 8LR H5  MAN H5  "Carbohydrate core" 
18 8LR HO6 MAN HO6 "Carbohydrate core" 
19 8LR H61 MAN H61 "Carbohydrate core" 
20 8LR H62 MAN H62 "Carbohydrate core" 
21 8LR HO4 MAN HO4 "Carbohydrate core" 
22 8LR HO3 MAN HO3 "Carbohydrate core" 
23 8LR HO2 MAN HO2 "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
8LR "CARBOHYDRATE ISOMER"                 D        PDB ? 
8LR "CARBOHYDRATE RING"                   pyranose PDB ? 
8LR "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
8LR "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8LR "Create component"         2014-04-22 EBI  
8LR "Initial release"          2015-04-22 RCSB 
8LR "Other modification"       2020-07-03 RCSB 
8LR "Modify parent residue"    2020-07-17 RCSB 
8LR "Modify synonyms"          2020-07-17 RCSB 
8LR "Modify internal type"     2020-07-17 RCSB 
8LR "Modify linking type"      2020-07-17 RCSB 
8LR "Modify atom id"           2020-07-17 RCSB 
8LR "Modify component atom id" 2020-07-17 RCSB 
8LR "Modify leaving atom flag" 2020-07-17 RCSB 
8LR "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8LR 
_pdbx_chem_comp_pcm.modified_residue_id                GLY 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               OAF 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   N 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
