data_AFR
#

_chem_comp.id                                   AFR
_chem_comp.name                                 "alpha-D-threo-hexo-2,5-diulo-5,1-pyranosyl fluoride"
_chem_comp.type                                 D-SACCHARIDE
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H9 F O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;2-OXO-1,2,DIDEOXY-5F-D-GLUCOPYRANOSE; alpha-D-threo-hexo-2,5-diulo-5,1-syl fluoride; D-threo-hexo-2,5-diulo-5,1-syl
fluoride; threo-hexo-2,5-diulo-5,1-syl fluoride
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-03-14
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       180.131
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AFR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4AMX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AFR  "2-OXO-1,2,DIDEOXY-5F-D-GLUCOPYRANOSE"           PDB  ?  
2  AFR  "alpha-D-threo-hexo-2,5-diulo-5,1-syl fluoride"  PDB  ?  
3  AFR  "D-threo-hexo-2,5-diulo-5,1-syl fluoride"        PDB  ?  
4  AFR  "threo-hexo-2,5-diulo-5,1-syl fluoride"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AFR  F1   F1   F  0  1  N  N  N  52.197  22.658  43.167   0.943  -0.336  -1.728  F1   AFR   1  
AFR  C5   C5   C  0  1  N  N  S  53.206  23.473  43.439   1.006  -0.295  -0.331  C5   AFR   2  
AFR  C4   C4   C  0  1  N  N  S  54.289  23.239  42.385   0.169   0.879   0.181  C4   AFR   3  
AFR  O4   O4   O  0  1  N  N  N  54.818  21.920  42.501   0.696   2.104  -0.334  O4   AFR   4  
AFR  C6   C6   C  0  1  N  N  N  53.662  23.206  44.871   2.461  -0.111   0.107  C6   AFR   5  
AFR  O6   O6   O  0  1  N  N  N  54.638  24.158  45.302   2.526  -0.069   1.534  O6   AFR   6  
AFR  O5   O5   O  0  1  N  N  N  52.776  24.831  43.336   0.502  -1.520   0.203  O5   AFR   7  
AFR  C1   C1   C  0  1  N  N  N  52.572  25.408  42.006  -0.821  -1.847  -0.236  C1   AFR   8  
AFR  C2   C2   C  0  1  N  N  N  53.052  24.804  40.896  -1.735  -0.687   0.097  C2   AFR   9  
AFR  O2   O2   O  0  1  N  N  N  52.949  25.377  39.819  -2.790  -0.865   0.656  O2   AFR  10  
AFR  C3   C3   C  0  1  N  N  S  53.679  23.434  40.995  -1.280   0.705  -0.292  C3   AFR  11  
AFR  O3   O3   O  0  1  N  Y  N  54.659  23.221  39.973  -2.115   1.679   0.336  O3   AFR  12  
AFR  H4   H4   H  0  1  N  N  N  55.088  23.982  42.528   0.198   0.900   1.271  H4   AFR  13  
AFR  H61  H61  H  0  1  N  N  N  52.790  23.262  45.539   3.059  -0.946  -0.260  H61  AFR  14  
AFR  H62  H62  H  0  1  N  N  N  54.100  22.198  44.924   2.849   0.821  -0.302  H62  AFR  15  
AFR  HO4  HO4  H  0  1  N  N  N  55.489  21.788  41.841   0.212   2.891  -0.048  HO4  AFR  16  
AFR  H3   H3   H  0  1  N  N  N  52.878  22.689  40.878  -1.331   0.819  -1.375  H3   AFR  17  
AFR  H6   H6   H  0  1  N  N  N  54.899  23.963  46.194   3.421   0.045   1.883  H6   AFR  18  
AFR  H11  H11  H  0  1  N  N  N  51.484  25.494  41.868  -0.820  -2.015  -1.314  H11  AFR  19  
AFR  H12  H12  H  0  1  N  N  N  53.019  26.413  42.031  -1.166  -2.745   0.275  H12  AFR  20  
AFR  HO3  HO3  H  0  1  N  N  N  54.589  23.906  39.319  -3.046   1.624   0.080  HO3  AFR  21  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AFR  F1  C5   SING  N  N   1  
AFR  C5  C4   SING  N  N   2  
AFR  C5  C6   SING  N  N   3  
AFR  C5  O5   SING  N  N   4  
AFR  C4  O4   SING  N  N   5  
AFR  C4  C3   SING  N  N   6  
AFR  C6  O6   SING  N  N   7  
AFR  O5  C1   SING  N  N   8  
AFR  C1  C2   SING  N  N   9  
AFR  C2  O2   DOUB  N  N  10  
AFR  C2  C3   SING  N  N  11  
AFR  C3  O3   SING  N  N  12  
AFR  C4  H4   SING  N  N  13  
AFR  C6  H61  SING  N  N  14  
AFR  C6  H62  SING  N  N  15  
AFR  O4  HO4  SING  N  N  16  
AFR  C3  H3   SING  N  N  17  
AFR  O6  H6   SING  N  N  18  
AFR  C1  H11  SING  N  N  19  
AFR  C1  H12  SING  N  N  20  
AFR  O3  HO3  SING  N  N  21  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AFR  SMILES            ACDLabs               12.01  "O=C1C(O)C(O)C(F)(OC1)CO"  
AFR  InChI             InChI                 1.03   "InChI=1S/C6H9FO5/c7-6(2-8)5(11)4(10)3(9)1-12-6/h4-5,8,10-11H,1-2H2/t4-,5+,6-/m1/s1"  
AFR  InChIKey          InChI                 1.03   VCJAHEOIRFFLTQ-NGJCXOISSA-N  
AFR  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@]1(F)OCC(=O)[C@@H](O)[C@@H]1O"  
AFR  SMILES            CACTVS                3.385  "OC[C]1(F)OCC(=O)[CH](O)[CH]1O"  
AFR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C1C(=O)[C@H]([C@@H]([C@](O1)(CO)F)O)O"  
AFR  SMILES            "OpenEye OEToolkits"  1.9.2  "C1C(=O)C(C(C(O1)(CO)F)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AFR  "SYSTEMATIC NAME"  ACDLabs               12.01  "alpha-D-threo-hexo-2,5-diulo-5,1-pyranosyl fluoride"  
AFR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(4S,5S,6S)-6-fluoranyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-one"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AFR  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
AFR  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AFR  "Create component"    2012-03-14  EBI   
AFR  "Other modification"  2012-03-14  EBI   
AFR  "Initial release"     2013-03-27  RCSB  
AFR  "Modify descriptor"   2014-09-05  RCSB  
AFR  "Other modification"  2020-07-03  RCSB  
AFR  "Modify name"         2020-07-17  RCSB  
AFR  "Modify synonyms"     2020-07-17  RCSB  
##
