data_ATR
# 
_chem_comp.id                                    ATR 
_chem_comp.name                                  "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        507.181 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ATR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1AFL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ATR PB     PB   P 0 1 N N N 9.209  7.097  2.633  0.821  -0.010 -6.586 PB     ATR 1  
ATR O1B    O1B  O 0 1 N N N 8.783  7.302  4.022  1.170  1.416  -6.406 O1B    ATR 2  
ATR O2B    O2B  O 0 1 N N N 10.027 5.875  2.468  1.852  -0.690 -7.619 O2B    ATR 3  
ATR O3B    O3B  O 0 1 N N N 8.084  7.266  1.680  -0.675 -0.127 -7.167 O3B    ATR 4  
ATR PA     PA   P 0 1 N N R 10.591 9.841  2.298  -0.145 -0.039 -4.188 PA     ATR 5  
ATR O1A    O1A  O 0 1 N N N 12.076 10.063 2.321  -1.506 -0.146 -4.760 O1A    ATR 6  
ATR O2A    O2A  O 0 1 N N N 9.764  10.523 3.361  0.251  1.513  -4.033 O2A    ATR 7  
ATR O3A    O3A  O 0 1 N N N 10.265 8.188  2.075  0.906  -0.766 -5.167 O3A    ATR 8  
ATR "O5'"  O5*  O 0 1 N N N 10.047 10.373 0.789  -0.112 -0.748 -2.743 "O5'"  ATR 9  
ATR "C5'"  C5*  C 0 1 N N N 10.741 9.732  -0.232 -1.061 -0.062 -1.925 "C5'"  ATR 10 
ATR "C4'"  C4*  C 0 1 N N R 11.808 10.475 -0.781 -1.080 -0.690 -0.530 "C4'"  ATR 11 
ATR "O4'"  O4*  O 0 1 N N N 12.092 9.601  -1.852 0.215  -0.564 0.095  "O4'"  ATR 12 
ATR "C3'"  C3*  C 0 1 N N R 11.437 11.823 -1.499 -2.042 0.084  0.397  "C3'"  ATR 13 
ATR "O3'"  O3*  O 0 1 N N N 11.368 13.033 -0.650 -3.306 -0.578 0.474  "O3'"  ATR 14 
ATR "C2'"  C2*  C 0 1 N N R 12.582 11.954 -2.560 -1.335 0.065  1.773  "C2'"  ATR 15 
ATR "O2'"  O2*  O 0 1 N N N 13.981 12.121 -2.135 -2.142 -0.608 2.741  "O2'"  ATR 16 
ATR "P2'"  P2*  P 0 1 N N N 15.194 12.393 -3.346 -2.419 0.443  3.928  "P2'"  ATR 17 
ATR O1P    O1P  O 0 1 N N N 15.792 11.054 -3.772 -3.126 1.625  3.386  O1P    ATR 18 
ATR O2P    O2P  O 0 1 N N N 14.400 13.137 -4.438 -3.328 -0.252 5.061  O2P    ATR 19 
ATR O3P    O3P  O 0 1 N N N 16.076 13.234 -2.440 -1.018 0.905  4.573  O3P    ATR 20 
ATR "C1'"  C1*  C 0 1 N N R 12.590 10.463 -2.923 -0.028 -0.715 1.510  "C1'"  ATR 21 
ATR N9     N9   N 0 1 Y N N 11.833 10.231 -4.171 1.074  -0.138 2.282  N9     ATR 22 
ATR C8     C8   C 0 1 Y N N 12.415 10.092 -5.415 1.896  0.872  1.882  C8     ATR 23 
ATR N7     N7   N 0 1 Y N N 11.582 9.664  -6.303 2.765  1.134  2.815  N7     ATR 24 
ATR C5     C5   C 0 1 Y N N 10.351 9.510  -5.612 2.553  0.314  3.872  C5     ATR 25 
ATR C6     C6   C 0 1 Y N N 9.068  9.036  -6.005 3.166  0.136  5.124  C6     ATR 26 
ATR N6     N6   N 0 1 N N N 8.860  8.633  -7.262 4.241  0.920  5.503  N6     ATR 27 
ATR N1     N1   N 0 1 Y N N 8.077  9.000  -5.051 2.686  -0.798 5.937  N1     ATR 28 
ATR C2     C2   C 0 1 Y N N 8.334  9.413  -3.808 1.660  -1.551 5.584  C2     ATR 29 
ATR N3     N3   N 0 1 Y N N 9.474  9.870  -3.314 1.058  -1.424 4.420  N3     ATR 30 
ATR C4     C4   C 0 1 Y N N 10.473 9.883  -4.286 1.468  -0.516 3.541  C4     ATR 31 
ATR HOB2   2HOB H 0 0 N N N 10.302 5.742  1.568  1.769  -0.208 -8.454 HOB2   ATR 32 
ATR HOB3   3HOB H 0 0 N N N 8.359  7.133  0.780  -0.863 -1.070 -7.269 HOB3   ATR 33 
ATR HOA2   2HOA H 0 0 N N N 8.824  10.382 3.346  1.142  1.538  -3.659 HOA2   ATR 34 
ATR "H5'1" 1H5* H 0 0 N N N 11.102 8.735  0.113  -2.052 -0.141 -2.373 "H5'1" ATR 35 
ATR "H5'2" 2H5* H 0 0 N N N 10.037 9.414  -1.036 -0.781 0.988  -1.847 "H5'2" ATR 36 
ATR "H4'"  H4*  H 0 1 N N N 12.555 10.747 0.000  -1.373 -1.738 -0.590 "H4'"  ATR 37 
ATR "H3'"  H3*  H 0 1 N N N 10.397 11.773 -1.898 -2.170 1.108  0.046  "H3'"  ATR 38 
ATR "HO3'" *HO3 H 0 0 N N N 11.143 13.847 -1.084 -3.670 -0.589 -0.421 "HO3'" ATR 39 
ATR "H2'"  H2*  H 0 1 N N N 12.375 12.820 -3.231 -1.113 1.080  2.102  "H2'"  ATR 40 
ATR HOP2   2HOP H 0 0 N N N 15.064 13.285 -5.100 -3.469 0.410  5.751  HOP2   ATR 41 
ATR HOP3   3HOP H 0 0 N N N 16.740 13.382 -3.102 -0.591 0.108  4.914  HOP3   ATR 42 
ATR "H1'"  H1*  H 0 1 N N N 13.658 10.182 -3.078 -0.158 -1.767 1.763  "H1'"  ATR 43 
ATR H8     H8   H 0 1 N N N 13.464 10.306 -5.679 1.836  1.380  0.931  H8     ATR 44 
ATR HN61   1HN6 H 0 0 N N N 7.940  8.293  -7.543 4.654  0.791  6.371  HN61   ATR 45 
ATR HN62   2HN6 H 0 0 N N N 9.551  7.918  -7.490 4.585  1.597  4.899  HN62   ATR 46 
ATR H2     H2   H 0 1 N N N 7.493  9.371  -3.095 1.302  -2.299 6.275  H2     ATR 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ATR PB    O1B    DOUB N N 1  
ATR PB    O2B    SING N N 2  
ATR PB    O3B    SING N N 3  
ATR PB    O3A    SING N N 4  
ATR O2B   HOB2   SING N N 5  
ATR O3B   HOB3   SING N N 6  
ATR PA    O1A    DOUB N N 7  
ATR PA    O2A    SING N N 8  
ATR PA    O3A    SING N N 9  
ATR PA    "O5'"  SING N N 10 
ATR O2A   HOA2   SING N N 11 
ATR "O5'" "C5'"  SING N N 12 
ATR "C5'" "C4'"  SING N N 13 
ATR "C5'" "H5'1" SING N N 14 
ATR "C5'" "H5'2" SING N N 15 
ATR "C4'" "O4'"  SING N N 16 
ATR "C4'" "C3'"  SING N N 17 
ATR "C4'" "H4'"  SING N N 18 
ATR "O4'" "C1'"  SING N N 19 
ATR "C3'" "O3'"  SING N N 20 
ATR "C3'" "C2'"  SING N N 21 
ATR "C3'" "H3'"  SING N N 22 
ATR "O3'" "HO3'" SING N N 23 
ATR "C2'" "O2'"  SING N N 24 
ATR "C2'" "C1'"  SING N N 25 
ATR "C2'" "H2'"  SING N N 26 
ATR "O2'" "P2'"  SING N N 27 
ATR "P2'" O1P    DOUB N N 28 
ATR "P2'" O2P    SING N N 29 
ATR "P2'" O3P    SING N N 30 
ATR O2P   HOP2   SING N N 31 
ATR O3P   HOP3   SING N N 32 
ATR "C1'" N9     SING N N 33 
ATR "C1'" "H1'"  SING N N 34 
ATR N9    C8     SING Y N 35 
ATR N9    C4     SING Y N 36 
ATR C8    N7     DOUB Y N 37 
ATR C8    H8     SING N N 38 
ATR N7    C5     SING Y N 39 
ATR C5    C6     SING Y N 40 
ATR C5    C4     DOUB Y N 41 
ATR C6    N6     SING N N 42 
ATR C6    N1     DOUB Y N 43 
ATR N6    HN61   SING N N 44 
ATR N6    HN62   SING N N 45 
ATR N1    C2     SING Y N 46 
ATR C2    N3     DOUB Y N 47 
ATR C2    H2     SING N N 48 
ATR N3    C4     SING Y N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ATR SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(OP(=O)(O)O)C3O"                                                                                                                                                  
ATR SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O[P](O)(O)=O"                                                                                                                         
ATR SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O[P](O)(O)=O"                                                                                                                                
ATR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O)O)OP(=O)(O)O)N"                                                                                                                      
ATR SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)OP(=O)(O)O)N"                                                                                                                                            
ATR InChI            InChI                1.03  "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(27-29(17,18)19)6(16)4(26-10)1-25-31(23,24)28-30(20,21)22/h2-4,6-7,10,16H,1H2,(H,23,24)(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1" 
ATR InChIKey         InChI                1.03  YPTPYQSAVGGMFN-KQYNXXCUSA-N                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ATR "SYSTEMATIC NAME" ACDLabs              10.04 
;adenosine 2'-(dihydrogen phosphate) 5'-(trihydrogen diphosphate)
;
ATR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ATR "Create component"  1999-07-08 EBI  
ATR "Modify descriptor" 2011-06-04 RCSB 
# 
