data_AXR
#

_chem_comp.id                                   AXR
_chem_comp.name                                 "methyl alpha-D-arabinofuranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O5"
_chem_comp.mon_nstd_parent_comp_id              BXY
_chem_comp.pdbx_synonyms                        "1-O-methyl-alpha-D-arabinofuranoside; methyl alpha-D-arabinoside; methyl D-arabinoside; methyl arabinoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-06-03
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       164.156
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AXR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3HNS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AXR  1-O-methyl-alpha-D-arabinofuranoside    PDB  ?  
2  AXR  "methyl alpha-D-arabinoside"            PDB  ?  
3  AXR  "methyl D-arabinoside"                  PDB  ?  
4  AXR  "methyl arabinoside"                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AXR  O5   O5   O  0  1  N  N  N  12.889  38.831  -1.581  -2.502  -2.089  -0.275  O5   AXR   1  
AXR  C5   C5   C  0  1  N  N  N  14.147  38.121  -1.615  -2.035  -0.812  -0.716  C5   AXR   2  
AXR  C4   C4   C  0  1  N  N  R  15.182  39.190  -1.956  -1.237  -0.145   0.406  C4   AXR   3  
AXR  O4   O4   O  0  1  N  N  N  15.153  40.111  -0.863  -0.024  -0.878   0.646  O4   AXR   4  
AXR  C3   C3   C  0  1  N  N  S  16.551  38.544  -1.749  -0.835   1.282  -0.014  C3   AXR   5  
AXR  O3   O3   O  0  1  N  N  N  16.924  37.977  -3.011  -1.303   2.236   0.941  O3   AXR   6  
AXR  C2   C2   C  0  1  N  N  S  17.356  39.835  -1.630   0.713   1.250  -0.034  C2   AXR   7  
AXR  O2   O2   O  0  1  N  N  N  18.553  39.546  -0.896   1.224   1.965  -1.161  O2   AXR   8  
AXR  C1   C1   C  0  1  N  N  S  16.468  40.657  -0.697   1.005  -0.267  -0.163  C1   AXR   9  
AXR  O1   O1   O  0  1  N  N  N  16.515  41.989  -1.216   2.301  -0.576   0.353  O1   AXR  10  
AXR  C6   C6   C  0  1  N  N  N  15.899  42.890  -0.286   2.695  -1.936   0.157  C6   AXR  11  
AXR  HO5  HO5  H  0  1  N  Y  N  12.637  38.987  -0.678  -3.017  -2.569  -0.937  HO5  AXR  12  
AXR  H51  H5   H  0  1  N  N  N  14.365  37.653  -0.644  -1.395  -0.942  -1.589  H51  AXR  13  
AXR  H52  H5A  H  0  1  N  N  N  14.141  37.300  -2.347  -2.886  -0.185  -0.980  H52  AXR  14  
AXR  H4   H4   H  0  1  N  N  N  15.006  39.616  -2.955  -1.837  -0.108   1.315  H4   AXR  15  
AXR  H3   H3   H  0  1  N  N  N  16.644  37.797  -0.947  -1.224   1.512  -1.006  H3   AXR  16  
AXR  HO3  HO3  H  0  1  N  Y  N  17.007  38.668  -3.657  -1.078   3.151   0.726  HO3  AXR  17  
AXR  H2   H2   H  0  1  N  N  N  17.608  40.304  -2.592   1.122   1.647   0.895  H2   AXR  18  
AXR  HO2  HO2  H  0  1  N  Y  N  19.286  39.482  -1.497   2.189   1.973  -1.217  HO2  AXR  19  
AXR  H1   H1   H  0  1  N  N  N  16.763  40.645   0.363   0.917  -0.588  -1.201  H1   AXR  20  
AXR  H6   H6   H  0  1  N  N  N  15.741  42.376   0.674   3.690  -2.089   0.577  H6   AXR  21  
AXR  H6A  H6A  H  0  1  N  N  N  16.553  43.761  -0.132   1.985  -2.596   0.655  H6A  AXR  22  
AXR  H6B  H6B  H  0  1  N  N  N  14.930  43.224  -0.686   2.713  -2.159  -0.909  H6B  AXR  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AXR  C5  O5   SING  N  N   1  
AXR  O5  HO5  SING  N  N   2  
AXR  C4  C5   SING  N  N   3  
AXR  C5  H51  SING  N  N   4  
AXR  C5  H52  SING  N  N   5  
AXR  C4  C3   SING  N  N   6  
AXR  C4  O4   SING  N  N   7  
AXR  C4  H4   SING  N  N   8  
AXR  O4  C1   SING  N  N   9  
AXR  O3  C3   SING  N  N  10  
AXR  C3  C2   SING  N  N  11  
AXR  C3  H3   SING  N  N  12  
AXR  O3  HO3  SING  N  N  13  
AXR  C2  O2   SING  N  N  14  
AXR  C2  C1   SING  N  N  15  
AXR  C2  H2   SING  N  N  16  
AXR  O2  HO2  SING  N  N  17  
AXR  O1  C1   SING  N  N  18  
AXR  C1  H1   SING  N  N  19  
AXR  O1  C6   SING  N  N  20  
AXR  C6  H6   SING  N  N  21  
AXR  C6  H6A  SING  N  N  22  
AXR  C6  H6B  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AXR  SMILES            ACDLabs               10.04  "OC1C(OC(OC)C1O)CO"  
AXR  SMILES_CANONICAL  CACTVS                3.341  "CO[C@H]1O[C@H](CO)[C@@H](O)[C@@H]1O"  
AXR  SMILES            CACTVS                3.341  "CO[CH]1O[CH](CO)[CH](O)[CH]1O"  
AXR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CO[C@@H]1[C@H]([C@@H]([C@H](O1)CO)O)O"  
AXR  SMILES            "OpenEye OEToolkits"  1.5.0  "COC1C(C(C(O1)CO)O)O"  
AXR  InChI             InChI                 1.03   "InChI=1S/C6H12O5/c1-10-6-5(9)4(8)3(2-7)11-6/h3-9H,2H2,1H3/t3-,4-,5+,6+/m1/s1"  
AXR  InChIKey          InChI                 1.03   NALRCAPFICWVAQ-ZXXMMSQZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AXR  "SYSTEMATIC NAME"  ACDLabs               10.04  "methyl alpha-D-arabinofuranoside"  
AXR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,4S,5S)-2-(hydroxymethyl)-5-methoxy-oxolane-3,4-diol"  
#
_pdbx_chem_comp_related.comp_id            AXR
_pdbx_chem_comp_related.related_comp_id    BXY
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  AXR  C1   BXY  C1   "Carbohydrate core"  
 2  AXR  C2   BXY  C2   "Carbohydrate core"  
 3  AXR  C3   BXY  C3   "Carbohydrate core"  
 4  AXR  C4   BXY  C4   "Carbohydrate core"  
 5  AXR  C5   BXY  C5   "Carbohydrate core"  
 6  AXR  O1   BXY  O1   "Carbohydrate core"  
 7  AXR  O2   BXY  O2   "Carbohydrate core"  
 8  AXR  O3   BXY  O3   "Carbohydrate core"  
 9  AXR  O4   BXY  O4   "Carbohydrate core"  
10  AXR  O5   BXY  O5   "Carbohydrate core"  
11  AXR  H1   BXY  H1   "Carbohydrate core"  
12  AXR  H2   BXY  H2   "Carbohydrate core"  
13  AXR  H3   BXY  H3   "Carbohydrate core"  
14  AXR  H4   BXY  H4   "Carbohydrate core"  
15  AXR  H51  BXY  H51  "Carbohydrate core"  
16  AXR  H52  BXY  H52  "Carbohydrate core"  
17  AXR  HO2  BXY  HO2  "Carbohydrate core"  
18  AXR  HO3  BXY  HO3  "Carbohydrate core"  
19  AXR  HO5  BXY  HO5  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AXR  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
AXR  "CARBOHYDRATE RING"                    furanose  PDB  ?  
AXR  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
AXR  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AXR  "Create component"          2009-06-03  RCSB  
AXR  "Modify descriptor"         2011-06-04  RCSB  
AXR  "Other modification"        2020-07-03  RCSB  
AXR  "Modify parent residue"     2020-07-17  RCSB  
AXR  "Modify synonyms"           2020-07-17  RCSB  
AXR  "Modify linking type"       2020-07-17  RCSB  
AXR  "Modify atom id"            2020-07-17  RCSB  
AXR  "Modify component atom id"  2020-07-17  RCSB  
AXR  "Modify leaving atom flag"  2020-07-17  RCSB  
##
