data_BER
#

_chem_comp.id                                   BER
_chem_comp.name                                 BERBERINE
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H18 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2001-09-12
_chem_comp.pdbx_modified_date                   2011-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       336.361
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BER
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1JUM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BER  C1    C1    C  0  1  Y  N  N  109.426  45.703  92.527  -0.540  -0.194   0.013  C1    BER   1  
BER  C2    C2    C  0  1  Y  N  N  108.127  45.512  91.775  -2.025  -0.139   0.014  C2    BER   2  
BER  N1    N1    N  1  1  Y  N  N  110.670  45.869  91.777   0.078  -1.379  -0.033  N1    BER   3  
BER  C3    C3    C  0  1  Y  N  N  109.444  45.704  93.976   0.171   0.993   0.038  C3    BER   4  
BER  C4    C4    C  0  1  Y  N  N  108.151  45.226  90.292  -2.739  -1.294   0.327  C4    BER   5  
BER  C5    C5    C  0  1  Y  N  N  106.865  45.566  92.491  -2.676   1.067  -0.264  C5    BER   6  
BER  C6    C6    C  0  1  Y  N  N  111.918  46.001  92.495   1.391  -1.476   0.008  C6    BER   7  
BER  C7    C7    C  0  1  N  N  N  110.680  45.888  90.228  -0.697  -2.620  -0.141  C7    BER   8  
BER  C8    C8    C  0  1  Y  N  N  110.680  45.846  94.671   1.573   0.945   0.066  C8    BER   9  
BER  C9    C9    C  0  1  Y  N  N  106.895  45.024  89.600  -4.124  -1.310   0.330  C9    BER  10  
BER  C10   C10   C  0  1  N  N  N  109.488  45.143  89.503  -1.975  -2.544   0.686  C10   BER  11  
BER  C11   C11   C  0  1  Y  N  N  105.635  45.359  91.789  -4.062   1.054  -0.257  C11   BER  12  
BER  C12   C12   C  0  1  Y  N  N  111.949  45.985  93.943   2.197  -0.332   0.067  C12   BER  13  
BER  C13   C13   C  0  1  Y  N  N  110.667  45.841  96.079   2.360   2.105   0.098  C13   BER  14  
BER  C14   C14   C  0  1  Y  N  N  105.632  45.088  90.342  -4.777  -0.121   0.030  C14   BER  15  
BER  O1    O1    O  0  1  N  N  N  104.334  45.356  92.234  -4.942   2.053  -0.494  O1    BER  16  
BER  C15   C15   C  0  1  Y  N  N  113.224  46.107  94.679   3.601  -0.411   0.117  C15   BER  17  
BER  C16   C16   C  0  1  Y  N  N  111.894  45.967  96.814   3.718   2.001   0.144  C16   BER  18  
BER  O2    O2    O  0  1  N  N  N  104.302  44.932  89.927  -6.101   0.148  -0.040  O2    BER  19  
BER  C17   C17   C  0  1  N  N  N  103.527  44.779  91.146  -6.206   1.586   0.023  C17   BER  20  
BER  C18   C18   C  0  1  Y  N  N  113.188  46.093  96.162   4.343   0.753   0.159  C18   BER  21  
BER  O3    O3    O  0  1  N  N  N  114.441  46.227  93.930   4.220  -1.621   0.129  O3    BER  22  
BER  O4    O4    O  0  1  N  N  N  114.393  46.211  96.949   5.701   0.683   0.210  O4    BER  23  
BER  C19   C19   C  0  1  N  N  N  115.772  46.352  94.530   4.458  -1.976  -1.234  C19   BER  24  
BER  C20   C20   C  0  1  N  N  N  114.392  46.207  98.420   6.183   2.028   0.237  C20   BER  25  
BER  H31   1H3   H  0  1  N  N  N  108.510  45.596  94.553  -0.345   1.941   0.035  H31   BER  26  
BER  H51   1H5   H  0  1  N  N  N  106.840  45.765  93.575  -2.123   1.970  -0.474  H51   BER  27  
BER  H61   1H6   H  0  1  N  N  N  112.858  46.115  91.930   1.853  -2.452  -0.003  H61   BER  28  
BER  H71   1H7   H  0  1  N  N  N  110.738  46.941  89.866  -0.090  -3.453   0.214  H71   BER  29  
BER  H72   2H7   H  0  1  N  N  N  111.652  45.490  89.854  -0.957  -2.790  -1.186  H72   BER  30  
BER  H91   1H9   H  0  1  N  N  N  106.900  44.822  88.515  -4.675  -2.212   0.557  H91   BER  31  
BER  H101  1H10  H  0  0  N  N  N  109.755  44.083  89.283  -1.721  -2.522   1.746  H101  BER  32  
BER  H102  2H10  H  0  0  N  N  N  109.359  45.517  88.460  -2.593  -3.418   0.480  H102  BER  33  
BER  H131  1H13  H  0  0  N  N  N  109.701  45.739  96.602   1.891   3.078   0.086  H131  BER  34  
BER  H161  1H16  H  0  0  N  N  N  111.840  45.967  97.915   4.319   2.898   0.169  H161  BER  35  
BER  H171  1H17  H  0  0  N  N  N  103.214  43.726  91.340  -6.341   1.914   1.054  H171  BER  36  
BER  H172  2H17  H  0  0  N  N  N  102.504  45.217  91.075  -7.027   1.937  -0.601  H172  BER  37  
BER  H191  1H19  H  0  0  N  N  N  116.718  46.445  93.947   4.956  -2.945  -1.276  H191  BER  38  
BER  H192  2H19  H  0  0  N  N  N  115.733  47.220  95.228   3.508  -2.033  -1.766  H192  BER  39  
BER  H193  3H19  H  0  0  N  N  N  115.899  45.486  95.221   5.091  -1.222  -1.701  H193  BER  40  
BER  H201  1H20  H  0  0  N  N  N  115.322  46.298  99.027   7.273   2.022   0.279  H201  BER  41  
BER  H202  2H20  H  0  0  N  N  N  113.694  47.009  98.755   5.857   2.549  -0.662  H202  BER  42  
BER  H203  3H20  H  0  0  N  N  N  113.866  45.280  98.750   5.789   2.537   1.117  H203  BER  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BER  C1   C2    SING  Y  N   1  
BER  C1   N1    DOUB  Y  N   2  
BER  C1   C3    SING  Y  N   3  
BER  C2   C4    DOUB  Y  N   4  
BER  C2   C5    SING  Y  N   5  
BER  N1   C6    SING  Y  N   6  
BER  N1   C7    SING  N  N   7  
BER  C3   C8    DOUB  Y  N   8  
BER  C3   H31   SING  N  N   9  
BER  C4   C9    SING  Y  N  10  
BER  C4   C10   SING  N  N  11  
BER  C5   C11   DOUB  Y  N  12  
BER  C5   H51   SING  N  N  13  
BER  C6   C12   DOUB  Y  N  14  
BER  C6   H61   SING  N  N  15  
BER  C7   C10   SING  N  N  16  
BER  C7   H71   SING  N  N  17  
BER  C7   H72   SING  N  N  18  
BER  C8   C12   SING  Y  N  19  
BER  C8   C13   SING  Y  N  20  
BER  C9   C14   DOUB  Y  N  21  
BER  C9   H91   SING  N  N  22  
BER  C10  H101  SING  N  N  23  
BER  C10  H102  SING  N  N  24  
BER  C11  C14   SING  Y  N  25  
BER  C11  O1    SING  N  N  26  
BER  C12  C15   SING  Y  N  27  
BER  C13  C16   DOUB  Y  N  28  
BER  C13  H131  SING  N  N  29  
BER  C14  O2    SING  N  N  30  
BER  O1   C17   SING  N  N  31  
BER  C15  C18   DOUB  Y  N  32  
BER  C15  O3    SING  N  N  33  
BER  C16  C18   SING  Y  N  34  
BER  C16  H161  SING  N  N  35  
BER  O2   C17   SING  N  N  36  
BER  C17  H171  SING  N  N  37  
BER  C17  H172  SING  N  N  38  
BER  C18  O4    SING  N  N  39  
BER  O3   C19   SING  N  N  40  
BER  O4   C20   SING  N  N  41  
BER  C19  H191  SING  N  N  42  
BER  C19  H192  SING  N  N  43  
BER  C19  H193  SING  N  N  44  
BER  C20  H201  SING  N  N  45  
BER  C20  H202  SING  N  N  46  
BER  C20  H203  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BER  SMILES            ACDLabs               10.04  "O1c2c(OC1)cc5c(c2)c4cc3ccc(OC)c(OC)c3c[n+]4CC5"  
BER  SMILES_CANONICAL  CACTVS                3.341  COc1ccc2cc3c4cc5OCOc5cc4CC[n+]3cc2c1OC  
BER  SMILES            CACTVS                3.341  COc1ccc2cc3c4cc5OCOc5cc4CC[n+]3cc2c1OC  
BER  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "COc1ccc2cc-3[n+](cc2c1OC)CCc4c3cc5c(c4)OCO5"  
BER  SMILES            "OpenEye OEToolkits"  1.5.0  "COc1ccc2cc-3[n+](cc2c1OC)CCc4c3cc5c(c4)OCO5"  
BER  InChI             InChI                 1.03   "InChI=1S/C20H18NO4/c1-22-17-4-3-12-7-16-14-9-19-18(24-11-25-19)8-13(14)5-6-21(16)10-15(12)20(17)23-2/h3-4,7-10H,5-6,11H2,1-2H3/q+1"  
BER  InChIKey          InChI                 1.03   YBHILYKTIRIUTE-UHFFFAOYSA-N  
#
_pdbx_chem_comp_identifier.comp_id          BER
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  10.04
_pdbx_chem_comp_identifier.identifier       "9,10-dimethoxy-5,6-dihydro[1,3]dioxolo[4,5-g]isoquino[3,2-a]isoquinolin-7-ium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BER  "Create component"      2001-09-12  RCSB  
BER  "Modify aromatic_flag"  2011-06-04  RCSB  
BER  "Modify descriptor"     2011-06-04  RCSB  
##
