data_CVR
# 
_chem_comp.id                                    CVR 
_chem_comp.name                                  
;Cyclic adenosine 5'-diphosphocarbocyclic ribose
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H23 N5 O12 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-10-14 
_chem_comp.pdbx_modified_date                    2012-10-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.328 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     CVR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3U4I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CVR N1     N1     N 0 1 N N S 1.502  0.653  1.199  1.502  0.653  1.199  N1     CVR 1  
CVR C2     C2     C 0 1 N N N 2.847  0.911  1.135  2.847  0.911  1.135  C2     CVR 2  
CVR N3     N3     N 0 1 N N N 3.973  0.272  1.546  3.973  0.272  1.546  N3     CVR 3  
CVR C4     C4     C 0 1 Y N N 4.198  -0.727 2.428  4.198  -0.727 2.428  C4     CVR 4  
CVR C5     C5     C 0 1 Y N N 2.839  -0.951 2.669  2.839  -0.951 2.669  C5     CVR 5  
CVR C6     C6     C 0 1 N N N 1.682  -0.331 2.155  1.682  -0.331 2.155  C6     CVR 6  
CVR N6     N6     N 0 1 N N N 0.538  -1.134 2.514  0.538  -1.134 2.514  N6     CVR 7  
CVR N7     N7     N 0 1 Y N N 2.767  -1.961 3.565  2.767  -1.961 3.565  N7     CVR 8  
CVR C8     C8     C 0 1 Y N N 4.022  -2.345 3.862  4.022  -2.345 3.862  C8     CVR 9  
CVR N9     N9     N 0 1 Y N N 4.894  -1.585 3.171  4.894  -1.585 3.171  N9     CVR 10 
CVR PA     PA     P 0 1 N N N 6.426  2.837  4.385  6.426  2.837  4.385  PA     CVR 11 
CVR PB     PB     P 0 1 N N N 3.923  3.893  3.700  3.923  3.893  3.700  PB     CVR 12 
CVR "C1'"  "C1'"  C 0 1 N N R 6.309  -1.906 3.405  6.309  -1.906 3.405  "C1'"  CVR 13 
CVR O1A    O1A    O 0 1 N N N 6.189  3.581  5.679  6.189  3.581  5.679  O1A    CVR 14 
CVR O1B    O1B    O 0 1 N N N 3.566  3.833  5.174  3.566  3.833  5.174  O1B    CVR 15 
CVR C1D    C1D    C 0 1 N N R 0.823  1.543  0.276  0.823  1.543  0.276  C1D    CVR 16 
CVR "C2'"  "C2'"  C 0 1 N N R 7.043  -1.266 2.306  7.043  -1.266 2.306  "C2'"  CVR 17 
CVR "O2'"  "O2'"  O 0 1 N N N 7.345  -2.149 1.328  7.345  -2.149 1.328  "O2'"  CVR 18 
CVR O2A    O2A    O 0 1 N N N 7.679  3.385  3.752  7.679  3.385  3.752  O2A    CVR 19 
CVR O2B    O2B    O 0 1 N N N 4.164  5.341  3.260  4.164  5.341  3.260  O2B    CVR 20 
CVR C2D    C2D    C 0 1 N N S -0.407 2.188  0.815  -0.407 2.188  0.815  C2D    CVR 21 
CVR O2D    O2D    O 0 1 N N N -1.353 2.344  -0.223 -1.353 2.344  -0.223 O2D    CVR 22 
CVR "C3'"  "C3'"  C 0 1 N N S 8.275  -0.793 2.957  8.275  -0.793 2.957  "C3'"  CVR 23 
CVR "O3'"  "O3'"  O 0 1 N N N 9.288  -1.682 2.737  9.288  -1.682 2.737  "O3'"  CVR 24 
CVR O3A    O3A    O 0 1 N N N 5.192  2.997  3.399  5.192  2.997  3.399  O3A    CVR 25 
CVR C3D    C3D    C 0 1 N N R -0.059 3.562  1.312  -0.059 3.562  1.312  C3D    CVR 26 
CVR O3D    O3D    O 0 1 N N N -0.946 4.479  0.820  -0.946 4.479  0.820  O3D    CVR 27 
CVR "C4'"  "C4'"  C 0 1 N N R 7.950  -0.731 4.403  7.950  -0.731 4.403  "C4'"  CVR 28 
CVR "O4'"  "O4'"  O 0 1 N N N 6.727  -1.362 4.596  6.727  -1.362 4.596  "O4'"  CVR 29 
CVR C4D    C4D    C 0 1 N N R 1.280  3.860  0.766  1.280  3.860  0.766  C4D    CVR 30 
CVR C4X    C4X    C 0 1 N N N 1.752  2.656  0.027  1.752  2.656  0.027  C4X    CVR 31 
CVR "C5'"  "C5'"  C 0 1 N N N 7.866  0.708  4.805  7.866  0.708  4.805  "C5'"  CVR 32 
CVR "O5'"  "O5'"  O 0 1 N N N 6.605  1.303  4.723  6.605  1.303  4.723  "O5'"  CVR 33 
CVR C5D    C5D    C 0 1 N N N 2.245  4.263  1.846  2.245  4.263  1.846  C5D    CVR 34 
CVR O5D    O5D    O 0 1 N N N 2.693  3.375  2.834  2.693  3.375  2.834  O5D    CVR 35 
CVR H2     H2     H 0 1 N N N 3.063  1.846  0.639  3.063  1.846  0.639  H2     CVR 36 
CVR HN6    HN6    H 0 1 N N N 0.799  -1.944 3.040  0.799  -1.944 3.040  HN6    CVR 37 
CVR H8     H8     H 0 1 N N N 4.288  -3.137 4.546  4.288  -3.137 4.546  H8     CVR 38 
CVR "H1'"  "H1'"  H 0 1 N N N 6.461  -2.995 3.380  6.461  -2.995 3.380  "H1'"  CVR 39 
CVR HO1A   HO1A   H 0 0 N N N 6.877  4.224  5.806  6.877  4.224  5.806  HO1A   CVR 40 
CVR H1D    H1D    H 0 1 N N N 0.593  1.021  -0.665 0.593  1.021  -0.665 H1D    CVR 41 
CVR "H2'"  "H2'"  H 0 1 N N N 6.470  -0.410 1.920  6.470  -0.410 1.920  "H2'"  CVR 42 
CVR "HO2'" "HO2'" H 0 0 N N N 7.818  -1.704 0.634  7.818  -1.704 0.634  "HO2'" CVR 43 
CVR HO2B   HO2B   H 0 0 N N N 4.042  5.922  4.001  4.042  5.922  4.002  HO2B   CVR 44 
CVR H2D    H2D    H 0 1 N N N -0.818 1.586  1.639  -0.818 1.586  1.639  H2D    CVR 45 
CVR HO2D   HO2D   H 0 0 N N N -2.137 2.755  0.122  -2.137 2.755  0.122  HO2D   CVR 46 
CVR "H3'"  "H3'"  H 0 1 N N N 8.532  0.212  2.590  8.532  0.212  2.590  "H3'"  CVR 47 
CVR "HO3'" "HO3'" H 0 0 N N N 10.080 -1.371 3.160  10.080 -1.371 3.159  "HO3'" CVR 48 
CVR H3D    H3D    H 0 1 N N N -0.031 3.566  2.412  -0.031 3.566  2.412  H3D    CVR 49 
CVR HO3D   HO3D   H 0 0 N N N -0.718 5.344  1.140  -0.718 5.344  1.140  HO3D   CVR 50 
CVR "H4'"  "H4'"  H 0 1 N N N 8.744  -1.226 4.981  8.744  -1.226 4.981  "H4'"  CVR 51 
CVR H4D    H4D    H 0 1 N N N 1.192  4.693  0.054  1.191  4.694  0.054  H4D    CVR 52 
CVR H4X    H4X    H 0 1 N N N 2.758  2.381  0.376  2.758  2.381  0.376  H4X    CVR 53 
CVR H4XA   H4XA   H 0 0 N N N 1.784  2.875  -1.051 1.785  2.875  -1.051 H4XA   CVR 54 
CVR "H5'"  "H5'"  H 0 1 N N N 8.205  0.784  5.849  8.205  0.784  5.849  "H5'"  CVR 55 
CVR "H5'A" "H5'A" H 0 0 N N N 8.548  1.277  4.156  8.547  1.277  4.156  "H5'A" CVR 56 
CVR H5D    H5D    H 0 1 N N N 3.147  4.623  1.329  3.147  4.623  1.329  H5D    CVR 57 
CVR H5DA   H5DA   H 0 0 N N N 1.771  5.099  2.381  1.771  5.099  2.381  H5DA   CVR 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CVR N1    C2     SING N N 1  
CVR N1    C6     SING N N 2  
CVR N1    C1D    SING N N 3  
CVR C2    N3     DOUB N N 4  
CVR N3    C4     SING N N 5  
CVR C4    C5     DOUB Y N 6  
CVR C4    N9     SING Y N 7  
CVR C5    C6     SING N N 8  
CVR C5    N7     SING Y N 9  
CVR C6    N6     DOUB N N 10 
CVR N7    C8     DOUB Y N 11 
CVR C8    N9     SING Y N 12 
CVR N9    "C1'"  SING N N 13 
CVR PA    O1A    SING N N 14 
CVR PA    O2A    DOUB N N 15 
CVR PA    O3A    SING N N 16 
CVR PA    "O5'"  SING N N 17 
CVR PB    O1B    DOUB N N 18 
CVR PB    O2B    SING N N 19 
CVR PB    O3A    SING N N 20 
CVR PB    O5D    SING N N 21 
CVR "C1'" "C2'"  SING N N 22 
CVR "C1'" "O4'"  SING N N 23 
CVR C1D   C2D    SING N N 24 
CVR C1D   C4X    SING N N 25 
CVR "C2'" "O2'"  SING N N 26 
CVR "C2'" "C3'"  SING N N 27 
CVR C2D   O2D    SING N N 28 
CVR C2D   C3D    SING N N 29 
CVR "C3'" "O3'"  SING N N 30 
CVR "C3'" "C4'"  SING N N 31 
CVR C3D   O3D    SING N N 32 
CVR C3D   C4D    SING N N 33 
CVR "C4'" "O4'"  SING N N 34 
CVR "C4'" "C5'"  SING N N 35 
CVR C4D   C4X    SING N N 36 
CVR C4D   C5D    SING N N 37 
CVR "C5'" "O5'"  SING N N 38 
CVR C5D   O5D    SING N N 39 
CVR C2    H2     SING N N 40 
CVR N6    HN6    SING N N 41 
CVR C8    H8     SING N N 42 
CVR "C1'" "H1'"  SING N N 43 
CVR O1A   HO1A   SING N N 44 
CVR C1D   H1D    SING N N 45 
CVR "C2'" "H2'"  SING N N 46 
CVR "O2'" "HO2'" SING N N 47 
CVR O2B   HO2B   SING N N 48 
CVR C2D   H2D    SING N N 49 
CVR O2D   HO2D   SING N N 50 
CVR "C3'" "H3'"  SING N N 51 
CVR "O3'" "HO3'" SING N N 52 
CVR C3D   H3D    SING N N 53 
CVR O3D   HO3D   SING N N 54 
CVR "C4'" "H4'"  SING N N 55 
CVR C4D   H4D    SING N N 56 
CVR C4X   H4X    SING N N 57 
CVR C4X   H4XA   SING N N 58 
CVR "C5'" "H5'"  SING N N 59 
CVR "C5'" "H5'A" SING N N 60 
CVR C5D   H5D    SING N N 61 
CVR C5D   H5DA   SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CVR SMILES           ACDLabs              12.01 "O=P4(OCC5C(O)C(O)C(N1C(=[N@H])c2ncn(c2N=C1)C3OC(C(O)C3O)COP(=O)(O)O4)C5)O" 
CVR InChI            InChI                1.03  
"InChI=1S/C16H23N5O12P2/c17-14-9-15-19-5-20(14)7-1-6(10(22)11(7)23)2-30-34(26,27)33-35(28,29)31-3-8-12(24)13(25)16(32-8)21(15)4-18-9/h4-8,10-13,16-17,22-25H,1-3H2,(H,26,27)(H,28,29)/b17-14+/t6-,7-,8-,10-,11+,12-,13-,16-/m1/s1" 
CVR InChIKey         InChI                1.03  WXTUXMLWWNQYJT-BKYLUIDASA-N 
CVR SMILES_CANONICAL CACTVS               3.370 "O[C@H]1[C@@H](O)[C@H]2C[C@@H]1CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=N)[N@]2C=Nc45" 
CVR SMILES           CACTVS               3.370 "O[CH]1[CH](O)[CH]2C[CH]1CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=N)[N]2C=Nc45" 
CVR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C/1\c2c3n(cn2)[C@H]4[C@@H]([C@@H]([C@H](O4)CO[P@@](=O)(O[P@](=O)(OC[C@H]5C[C@@H](N1C=N3)[C@@H]([C@@H]5O)O)O)O)O)O" 
CVR SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc2c3n1C4C(C(C(O4)COP(=O)(OP(=O)(OCC5CC(C(C5O)O)N(C2=N)C=N3)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CVR "SYSTEMATIC NAME" ACDLabs 12.01 
"(2R,3S,4R,5R,8S,10S,13R,14S,15R,16R,24E)-24-imino-7,9,11,25-tetraoxa-1,17,19,22-tetraaza-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-18,20,22-triene-3,4,8,10,14,15-hexol 8,10-dioxide (non-preferred name)" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CVR "Create component"   2011-10-14 PDBJ 
CVR "Other modification" 2011-12-05 PDBJ 
CVR "Initial release"    2012-10-05 RCSB 
# 
