data_OSR
# 
_chem_comp.id                                    OSR 
_chem_comp.name                                  "(6S,9aS)-N-[(4-bromophenyl)methyl]-6-[(2S)-butan-2-yl]-8-[(4-methoxynaphthalen-1-yl)methyl]-4,7-bis(oxidanylidene)-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H35 Br N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-10 
_chem_comp.pdbx_modified_date                    2023-07-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        607.538 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OSR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8I7X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OSR N1  N1  N  0 1 N N N 40.810 17.115 -7.672  0.373  1.075  0.526  N1  OSR 1  
OSR C7  C1  C  0 1 Y N N 35.843 17.566 -5.741  -4.727 -0.991 1.253  C7  OSR 2  
OSR C8  C2  C  0 1 Y N N 36.487 17.627 -4.528  -5.938 -0.677 0.712  C8  OSR 3  
OSR N2  N2  N  0 1 N N N 42.630 15.616 -7.675  2.338  -0.042 -0.057 N2  OSR 4  
OSR C9  C3  C  0 1 Y N N 36.369 16.620 -3.585  -6.539 -1.505 -0.231 C9  OSR 5  
OSR O1  O1  O  0 1 N N N 35.476 14.438 -3.009  -6.535 -3.459 -1.559 O1  OSR 6  
OSR C1  C4  C  0 1 N N N 37.889 15.590 -10.422 -2.344 3.744  -2.021 C1  OSR 7  
OSR C5  C5  C  0 1 N N N 36.931 18.212 -9.075  -3.702 1.962  1.079  C5  OSR 8  
OSR C6  C6  C  0 1 N N N 36.143 18.622 -6.782  -4.095 -0.079 2.272  C6  OSR 9  
OSR N3  N3  N  0 1 N N N 39.413 18.114 -9.377  -1.463 2.645  0.458  N3  OSR 10 
OSR C4  C7  C  0 1 N N S 38.094 18.111 -10.048 -2.895 2.952  0.284  C4  OSR 11 
OSR C3  C8  C  0 1 N N N 38.985 17.059 -12.170 -4.718 3.285  -1.392 C3  OSR 12 
OSR O3  O2  O  0 1 N N N 40.289 19.598 -10.838 -1.030 4.775  0.746  O3  OSR 13 
OSR C2  C9  C  0 1 N N S 37.917 16.974 -11.080 -3.266 2.843  -1.197 C2  OSR 14 
OSR C30 C10 C  0 1 N N N 40.428 18.850 -9.882  -0.598 3.646  0.654  C30 OSR 15 
OSR C19 C11 C  0 1 N N S 39.432 17.365 -8.103  -1.073 1.235  0.400  C19 OSR 16 
OSR C18 C12 C  0 1 N N N 38.553 18.284 -7.191  -1.772 0.492  1.542  C18 OSR 17 
OSR N   N4  N  0 1 N N N 37.192 18.229 -7.731  -3.183 0.849  1.599  N   OSR 18 
OSR C17 C13 C  0 1 Y N N 34.980 16.452 -6.025  -4.073 -2.171 0.861  C17 OSR 19 
OSR C16 C14 C  0 1 Y N N 34.196 16.359 -7.210  -2.824 -2.526 1.398  C16 OSR 20 
OSR C15 C15 C  0 1 Y N N 33.362 15.297 -7.425  -2.220 -3.677 0.995  C15 OSR 21 
OSR C14 C16 C  0 1 Y N N 33.270 14.272 -6.499  -2.822 -4.512 0.055  C14 OSR 22 
OSR C13 C17 C  0 1 Y N N 33.995 14.313 -5.343  -4.031 -4.200 -0.487 C13 OSR 23 
OSR C12 C18 C  0 1 Y N N 34.867 15.400 -5.060  -4.685 -3.020 -0.095 C12 OSR 24 
OSR C10 C19 C  0 1 Y N N 35.599 15.513 -3.842  -5.932 -2.659 -0.642 C10 OSR 25 
OSR C11 C20 C  0 1 N N N 36.509 14.203 -2.050  -7.798 -3.026 -2.068 C11 OSR 26 
OSR O   O3  O  0 1 N N N 35.802 18.285 -9.527  -4.881 2.188  1.256  O   OSR 27 
OSR C   C21 C  0 1 N N N 37.301 14.496 -11.285 -2.632 3.543  -3.510 C   OSR 28 
OSR C29 C22 C  0 1 N N N 41.775 18.756 -9.214  0.886  3.433  0.765  C29 OSR 29 
OSR C28 C23 C  0 1 N N N 41.623 18.333 -7.764  1.148  2.030  1.327  C28 OSR 30 
OSR C20 C24 C  0 1 N N N 41.307 15.833 -7.869  0.994  0.048  -0.088 C20 OSR 31 
OSR O2  O4  O  0 1 N N N 40.573 14.908 -8.197  0.341  -0.798 -0.669 O2  OSR 32 
OSR C21 C25 C  0 1 N N N 43.222 14.290 -7.804  3.020  -1.094 -0.815 C21 OSR 33 
OSR C22 C26 C  0 1 Y N N 43.347 13.561 -6.489  4.508  -0.975 -0.613 C22 OSR 34 
OSR C27 C27 C  0 1 Y N N 44.524 12.904 -6.151  5.121  -1.648 0.427  C27 OSR 35 
OSR C26 C28 C  0 1 Y N N 44.649 12.237 -4.944  6.486  -1.540 0.612  C26 OSR 36 
OSR C25 C29 C  0 1 Y N N 43.579 12.219 -4.073  7.240  -0.756 -0.243 C25 OSR 37 
OSR BR  BR1 BR 0 0 N N N 43.719 11.264 -2.439  9.108  -0.608 0.009  BR  OSR 38 
OSR C24 C30 C  0 1 Y N N 42.400 12.865 -4.377  6.627  -0.082 -1.284 C24 OSR 39 
OSR C23 C31 C  0 1 Y N N 42.293 13.536 -5.583  5.262  -0.196 -1.472 C23 OSR 40 
OSR H1  H1  H  0 1 N N N 37.103 18.485 -4.304  -6.438 0.229  1.021  H1  OSR 41 
OSR H2  H2  H  0 1 N N N 43.218 16.389 -7.436  2.855  0.590  0.467  H2  OSR 42 
OSR H3  H3  H  0 1 N N N 36.886 16.706 -2.641  -7.499 -1.232 -0.643 H3  OSR 43 
OSR H4  H4  H  0 1 N N N 37.291 15.660 -9.501  -2.521 4.786  -1.754 H4  OSR 44 
OSR H5  H5  H  0 1 N N N 38.922 15.309 -10.168 -1.305 3.487  -1.813 H5  OSR 45 
OSR H6  H6  H  0 1 N N N 36.466 19.538 -6.266  -4.873 0.486  2.787  H6  OSR 46 
OSR H7  H7  H  0 1 N N N 35.221 18.826 -7.347  -3.539 -0.674 2.996  H7  OSR 47 
OSR H8  H8  H  0 1 N N N 38.059 19.039 -10.638 -3.099 3.961  0.641  H8  OSR 48 
OSR H9  H9  H  0 1 N N N 38.974 18.064 -12.617 -5.010 3.127  -2.430 H9  OSR 49 
OSR H10 H10 H  0 1 N N N 39.974 16.864 -11.730 -5.367 2.700  -0.740 H10 OSR 50 
OSR H11 H11 H  0 1 N N N 38.776 16.310 -12.948 -4.813 4.343  -1.145 H11 OSR 51 
OSR H12 H12 H  0 1 N N N 36.941 17.125 -11.565 -3.154 1.810  -1.525 H12 OSR 52 
OSR H13 H13 H  0 1 N N N 38.908 16.407 -8.235  -1.402 0.809  -0.548 H13 OSR 53 
OSR H14 H14 H  0 1 N N N 38.566 17.915 -6.155  -1.679 -0.582 1.382  H14 OSR 54 
OSR H15 H15 H  0 1 N N N 38.930 19.317 -7.217  -1.297 0.757  2.487  H15 OSR 55 
OSR H16 H16 H  0 1 N N N 34.261 17.141 -7.952  -2.346 -1.888 2.127  H16 OSR 56 
OSR H17 H17 H  0 1 N N N 32.769 15.257 -8.327  -1.260 -3.947 1.410  H17 OSR 57 
OSR H18 H18 H  0 1 N N N 32.619 13.432 -6.693  -2.321 -5.419 -0.248 H18 OSR 58 
OSR H19 H19 H  0 1 N N N 33.905 13.506 -4.631  -4.485 -4.856 -1.214 H19 OSR 59 
OSR H20 H20 H  0 1 N N N 36.265 13.307 -1.460  -8.509 -2.935 -1.246 H20 OSR 60 
OSR H21 H21 H  0 1 N N N 37.465 14.049 -2.572  -7.681 -2.058 -2.555 H21 OSR 61 
OSR H22 H22 H  0 1 N N N 36.592 15.072 -1.381  -8.168 -3.754 -2.790 H22 OSR 62 
OSR H23 H23 H  0 1 N N N 37.321 13.544 -10.735 -2.455 2.500  -3.776 H23 OSR 63 
OSR H24 H24 H  0 1 N N N 36.262 14.749 -11.540 -3.670 3.799  -3.717 H24 OSR 64 
OSR H25 H25 H  0 1 N N N 37.892 14.399 -12.208 -1.974 4.184  -4.097 H25 OSR 65 
OSR H26 H26 H  0 1 N N N 42.391 18.015 -9.744  1.342  3.522  -0.221 H26 OSR 66 
OSR H27 H27 H  0 1 N N N 42.268 19.738 -9.254  1.312  4.180  1.435  H27 OSR 67 
OSR H28 H28 H  0 1 N N N 42.618 18.139 -7.336  0.829  1.984  2.368  H28 OSR 68 
OSR H29 H29 H  0 1 N N N 41.133 19.140 -7.200  2.210  1.796  1.254  H29 OSR 69 
OSR H30 H30 H  0 1 N N N 42.592 13.690 -8.477  2.683  -2.070 -0.466 H30 OSR 70 
OSR H31 H31 H  0 1 N N N 44.226 14.397 -8.241  2.787  -0.987 -1.875 H31 OSR 71 
OSR H32 H32 H  0 1 N N N 45.355 12.914 -6.841  4.532  -2.260 1.095  H32 OSR 72 
OSR H33 H33 H  0 1 N N N 45.572 11.738 -4.688  6.964  -2.066 1.425  H33 OSR 73 
OSR H34 H34 H  0 1 N N N 41.572 12.848 -3.684  7.215  0.530  -1.952 H34 OSR 74 
OSR H35 H35 H  0 1 N N N 41.374 14.049 -5.824  4.784  0.327  -2.287 H35 OSR 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OSR C3  C2  SING N N 1  
OSR C   C1  SING N N 2  
OSR C2  C1  SING N N 3  
OSR C2  C4  SING N N 4  
OSR O3  C30 DOUB N N 5  
OSR C4  N3  SING N N 6  
OSR C4  C5  SING N N 7  
OSR C30 N3  SING N N 8  
OSR C30 C29 SING N N 9  
OSR O   C5  DOUB N N 10 
OSR N3  C19 SING N N 11 
OSR C29 C28 SING N N 12 
OSR C5  N   SING N N 13 
OSR O2  C20 DOUB N N 14 
OSR C19 N1  SING N N 15 
OSR C19 C18 SING N N 16 
OSR C20 N2  SING N N 17 
OSR C20 N1  SING N N 18 
OSR C21 N2  SING N N 19 
OSR C21 C22 SING N N 20 
OSR C28 N1  SING N N 21 
OSR N   C18 SING N N 22 
OSR N   C6  SING N N 23 
OSR C15 C16 DOUB Y N 24 
OSR C15 C14 SING Y N 25 
OSR C16 C17 SING Y N 26 
OSR C6  C7  SING N N 27 
OSR C14 C13 DOUB Y N 28 
OSR C22 C27 DOUB Y N 29 
OSR C22 C23 SING Y N 30 
OSR C27 C26 SING Y N 31 
OSR C17 C7  DOUB Y N 32 
OSR C17 C12 SING Y N 33 
OSR C7  C8  SING Y N 34 
OSR C23 C24 DOUB Y N 35 
OSR C13 C12 SING Y N 36 
OSR C12 C10 DOUB Y N 37 
OSR C26 C25 DOUB Y N 38 
OSR C8  C9  DOUB Y N 39 
OSR C24 C25 SING Y N 40 
OSR C25 BR  SING N N 41 
OSR C10 C9  SING Y N 42 
OSR C10 O1  SING N N 43 
OSR O1  C11 SING N N 44 
OSR C8  H1  SING N N 45 
OSR N2  H2  SING N N 46 
OSR C9  H3  SING N N 47 
OSR C1  H4  SING N N 48 
OSR C1  H5  SING N N 49 
OSR C6  H6  SING N N 50 
OSR C6  H7  SING N N 51 
OSR C4  H8  SING N N 52 
OSR C3  H9  SING N N 53 
OSR C3  H10 SING N N 54 
OSR C3  H11 SING N N 55 
OSR C2  H12 SING N N 56 
OSR C19 H13 SING N N 57 
OSR C18 H14 SING N N 58 
OSR C18 H15 SING N N 59 
OSR C16 H16 SING N N 60 
OSR C15 H17 SING N N 61 
OSR C14 H18 SING N N 62 
OSR C13 H19 SING N N 63 
OSR C11 H20 SING N N 64 
OSR C11 H21 SING N N 65 
OSR C11 H22 SING N N 66 
OSR C   H23 SING N N 67 
OSR C   H24 SING N N 68 
OSR C   H25 SING N N 69 
OSR C29 H26 SING N N 70 
OSR C29 H27 SING N N 71 
OSR C28 H28 SING N N 72 
OSR C28 H29 SING N N 73 
OSR C21 H30 SING N N 74 
OSR C21 H31 SING N N 75 
OSR C27 H32 SING N N 76 
OSR C26 H33 SING N N 77 
OSR C24 H34 SING N N 78 
OSR C23 H35 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OSR InChI            InChI                1.06  "InChI=1S/C31H35BrN4O4/c1-4-20(2)29-30(38)34(18-22-11-14-26(40-3)25-8-6-5-7-24(22)25)19-27-35(16-15-28(37)36(27)29)31(39)33-17-21-9-12-23(32)13-10-21/h5-14,20,27,29H,4,15-19H2,1-3H3,(H,33,39)/t20-,27+,29-/m0/s1" 
OSR InChIKey         InChI                1.06  ZFXGQLLQQPADFS-XHGLXQHVSA-N                                                                                                                                                                                         
OSR SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)[C@@H]1N2[C@H](CN(Cc3ccc(OC)c4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(Br)cc5"                                                                                                                                 
OSR SMILES           CACTVS               3.385 "CC[CH](C)[CH]1N2[CH](CN(Cc3ccc(OC)c4ccccc34)C1=O)N(CCC2=O)C(=O)NCc5ccc(Br)cc5"                                                                                                                                     
OSR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCc3ccc(cc3)Br)Cc4ccc(c5c4cccc5)OC"                                                                                                                                  
OSR SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)C1C(=O)N(CC2N1C(=O)CCN2C(=O)NCc3ccc(cc3)Br)Cc4ccc(c5c4cccc5)OC"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           OSR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(6~{S},9~{a}~{S})-~{N}-[(4-bromophenyl)methyl]-6-[(2~{S})-butan-2-yl]-8-[(4-methoxynaphthalen-1-yl)methyl]-4,7-bis(oxidanylidene)-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OSR "Create component" 2023-02-10 PDBJ 
OSR "Initial release"  2023-07-19 RCSB 
# 
