data_RYR
# 
_chem_comp.id                                    RYR 
_chem_comp.name                                  "~{N}-[3-(5-carbamimidoylthiophen-3-yl)phenyl]-2-methyl-2-[4-(trifluoromethyl)phenoxy]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 F3 N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-09 
_chem_comp.pdbx_modified_date                    2023-07-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        447.473 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RYR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BWJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RYR C19  C1  C 0 1 Y N N -22.507 20.546 1.692  -3.530 1.084  0.461  C19  RYR 1  
RYR C15  C2  C 0 1 N N N -27.293 18.750 -1.199 -2.428 -2.421 2.048  C15  RYR 2  
RYR C17  C3  C 0 1 Y N N -24.801 20.562 0.943  -4.147 -1.202 0.089  C17  RYR 3  
RYR C18  C4  C 0 1 Y N N -23.523 19.995 0.928  -3.199 -0.257 0.454  C18  RYR 4  
RYR C20  C5  C 0 1 Y N N -22.744 21.666 2.473  -4.805 1.485  0.105  C20  RYR 5  
RYR C14  C6  C 0 1 N N N -25.903 18.872 -0.558 -2.538 -2.878 0.592  C14  RYR 6  
RYR C13  C7  C 0 1 N N N -24.841 19.063 -1.654 -1.464 -2.210 -0.227 C13  RYR 7  
RYR C10  C8  C 0 1 Y N N -23.690 22.201 -3.333 0.673  -1.454 -1.979 C10  RYR 8  
RYR C11  C9  C 0 1 Y N N -23.902 20.831 -3.273 0.829  -1.711 -0.622 C11  RYR 9  
RYR C02  C10 C 0 1 N N N -20.361 16.125 -6.893 7.429  1.628  -0.205 C02  RYR 10 
RYR C04  C11 C 0 1 Y N N -20.606 17.604 -6.753 6.221  0.895  0.207  C04  RYR 11 
RYR C05  C12 C 0 1 Y N N -21.485 18.154 -5.789 5.196  0.564  -0.606 C05  RYR 12 
RYR C06  C13 C 0 1 Y N N -21.500 19.648 -5.920 4.179  -0.127 0.037  C06  RYR 13 
RYR C07  C14 C 0 1 Y N N -22.319 20.533 -5.010 2.956  -0.590 -0.663 C07  RYR 14 
RYR C08  C15 C 0 1 Y N N -22.081 21.893 -5.062 2.795  -0.346 -2.025 C08  RYR 15 
RYR C09  C16 C 0 1 Y N N -22.786 22.740 -4.232 1.654  -0.774 -2.674 C09  RYR 16 
RYR C21  C17 C 0 1 N N N -21.618 22.267 3.310  -5.165 2.948  0.120  C21  RYR 17 
RYR C25  C18 C 0 1 Y N N -24.001 22.227 2.488  -5.749 0.545  -0.265 C25  RYR 18 
RYR C26  C19 C 0 1 Y N N -25.017 21.676 1.725  -5.421 -0.797 -0.279 C26  RYR 19 
RYR C27  C20 C 0 1 N N N -25.557 17.661 0.314  -2.363 -4.397 0.520  C27  RYR 20 
RYR C29  C21 C 0 1 Y N N -23.189 19.970 -4.086 1.969  -1.280 0.038  C29  RYR 21 
RYR C30  C22 C 0 1 Y N N -20.646 20.092 -6.964 4.394  -0.343 1.350  C30  RYR 22 
RYR F22  F1  F 0 1 N N N -20.907 23.156 2.583  -4.411 3.604  1.099  F22  RYR 23 
RYR F23  F2  F 0 1 N N N -20.830 21.243 3.751  -4.892 3.508  -1.132 F23  RYR 24 
RYR F24  F3  F 0 1 N N N -22.105 22.923 4.405  -6.527 3.090  0.407  F24  RYR 25 
RYR N01  N1  N 0 1 N N N -19.805 15.660 -7.912 7.569  2.012  -1.446 N01  RYR 26 
RYR N03  N2  N 0 1 N N N -20.831 15.276 -5.834 8.414  1.911  0.720  N03  RYR 27 
RYR N12  N3  N 0 1 N N N -24.858 20.386 -2.260 -0.165 -2.404 0.078  N12  RYR 28 
RYR O16  O1  O 0 1 N N N -25.907 20.069 0.208  -3.822 -2.522 0.076  O16  RYR 29 
RYR O28  O2  O 0 1 N N N -24.064 18.204 -1.944 -1.768 -1.498 -1.160 O28  RYR 30 
RYR S31  S1  S 0 1 Y N N -19.924 18.784 -7.626 5.895  0.310  1.832  S31  RYR 31 
RYR H191 H1  H 0 0 N N N -21.524 20.100 1.679  -2.794 1.820  0.749  H191 RYR 32 
RYR H151 H2  H 0 0 N N N -28.050 18.614 -0.412 -3.250 -2.845 2.625  H151 RYR 33 
RYR H152 H3  H 0 0 N N N -27.516 19.665 -1.767 -1.479 -2.759 2.465  H152 RYR 34 
RYR H153 H4  H 0 0 N N N -27.309 17.884 -1.877 -2.477 -1.333 2.092  H153 RYR 35 
RYR H181 H5  H 0 0 N N N -23.327 19.125 0.319  -2.203 -0.569 0.732  H181 RYR 36 
RYR H101 H6  H 0 0 N N N -24.237 22.855 -2.670 -0.216 -1.790 -2.492 H101 RYR 37 
RYR H051 H7  H 0 0 N N N -22.057 17.585 -5.070 5.169  0.813  -1.657 H051 RYR 38 
RYR H081 H8  H 0 0 N N N -21.348 22.291 -5.748 3.562  0.182  -2.573 H081 RYR 39 
RYR H091 H9  H 0 0 N N N -22.635 23.808 -4.283 1.528  -0.577 -3.729 H091 RYR 40 
RYR H251 H10 H 0 0 N N N -24.195 23.098 3.096  -6.744 0.860  -0.543 H251 RYR 41 
RYR H261 H11 H 0 0 N N N -25.998 22.128 1.743  -6.161 -1.531 -0.563 H261 RYR 42 
RYR H273 H12 H 0 0 N N N -26.325 17.538 1.092  -3.086 -4.877 1.180  H273 RYR 43 
RYR H271 H13 H 0 0 N N N -25.521 16.757 -0.312 -2.526 -4.733 -0.504 H271 RYR 44 
RYR H272 H14 H 0 0 N N N -24.577 17.819 0.788  -1.353 -4.662 0.833  H272 RYR 45 
RYR H291 H15 H 0 0 N N N -23.304 18.899 -4.005 2.089  -1.471 1.094  H291 RYR 46 
RYR H301 H16 H 0 0 N N N -20.499 21.118 -7.268 3.712  -0.863 2.007  H301 RYR 47 
RYR H011 H17 H 0 0 N N N -19.740 14.663 -7.881 8.365  2.495  -1.718 H011 RYR 48 
RYR H032 H19 H 0 0 N N N -21.300 15.674 -5.045 8.310  1.626  1.641  H032 RYR 49 
RYR H121 H20 H 0 0 N N N -25.565 21.029 -1.966 0.080  -3.023 0.783  H121 RYR 50 
RYR H031 H21 H 0 0 N N N -20.690 14.287 -5.886 9.210  2.394  0.448  H031 RYR 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RYR N01 C02  DOUB N N 1  
RYR S31 C30  SING Y N 2  
RYR S31 C04  SING Y N 3  
RYR C30 C06  DOUB Y N 4  
RYR C02 C04  SING N N 5  
RYR C02 N03  SING N N 6  
RYR C04 C05  DOUB Y N 7  
RYR C06 C05  SING Y N 8  
RYR C06 C07  SING N N 9  
RYR C08 C07  DOUB Y N 10 
RYR C08 C09  SING Y N 11 
RYR C07 C29  SING Y N 12 
RYR C09 C10  DOUB Y N 13 
RYR C29 C11  DOUB Y N 14 
RYR C10 C11  SING Y N 15 
RYR C11 N12  SING N N 16 
RYR N12 C13  SING N N 17 
RYR O28 C13  DOUB N N 18 
RYR C13 C14  SING N N 19 
RYR C15 C14  SING N N 20 
RYR C14 O16  SING N N 21 
RYR C14 C27  SING N N 22 
RYR O16 C17  SING N N 23 
RYR C18 C17  DOUB Y N 24 
RYR C18 C19  SING Y N 25 
RYR C17 C26  SING Y N 26 
RYR C19 C20  DOUB Y N 27 
RYR C26 C25  DOUB Y N 28 
RYR C20 C25  SING Y N 29 
RYR C20 C21  SING N N 30 
RYR F22 C21  SING N N 31 
RYR C21 F23  SING N N 32 
RYR C21 F24  SING N N 33 
RYR C19 H191 SING N N 34 
RYR C15 H151 SING N N 35 
RYR C15 H152 SING N N 36 
RYR C15 H153 SING N N 37 
RYR C18 H181 SING N N 38 
RYR C10 H101 SING N N 39 
RYR C05 H051 SING N N 40 
RYR C08 H081 SING N N 41 
RYR C09 H091 SING N N 42 
RYR C25 H251 SING N N 43 
RYR C26 H261 SING N N 44 
RYR C27 H273 SING N N 45 
RYR C27 H271 SING N N 46 
RYR C27 H272 SING N N 47 
RYR C29 H291 SING N N 48 
RYR C30 H301 SING N N 49 
RYR N01 H011 SING N N 50 
RYR N03 H032 SING N N 51 
RYR N12 H121 SING N N 52 
RYR N03 H031 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RYR InChI            InChI                1.06    "InChI=1S/C22H20F3N3O2S/c1-21(2,30-17-8-6-15(7-9-17)22(23,24)25)20(29)28-16-5-3-4-13(10-16)14-11-18(19(26)27)31-12-14/h3-12H,1-2H3,(H3,26,27)(H,28,29)" 
RYR InChIKey         InChI                1.06    OQVWICYACULMHT-UHFFFAOYSA-N                                                                                                                             
RYR SMILES_CANONICAL CACTVS               3.385   "CC(C)(Oc1ccc(cc1)C(F)(F)F)C(=O)Nc2cccc(c2)c3csc(c3)C(N)=N"                                                                                             
RYR SMILES           CACTVS               3.385   "CC(C)(Oc1ccc(cc1)C(F)(F)F)C(=O)Nc2cccc(c2)c3csc(c3)C(N)=N"                                                                                             
RYR SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "[H]/N=C(\c1cc(cs1)c2cccc(c2)NC(=O)C(C)(C)Oc3ccc(cc3)C(F)(F)F)/N"                                                                                       
RYR SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C(=O)Nc1cccc(c1)c2cc(sc2)C(=N)N)Oc3ccc(cc3)C(F)(F)F"                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           RYR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3-(5-carbamimidoylthiophen-3-yl)phenyl]-2-methyl-2-[4-(trifluoromethyl)phenoxy]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RYR "Create component" 2022-12-09 PDBE 
RYR "Initial release"  2023-08-02 RCSB 
# 
