data_UTR
# 
_chem_comp.id                                    UTR 
_chem_comp.name                                  "2-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylcarbamoyl]benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H31 N11 O10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-07 
_chem_comp.pdbx_modified_date                    2025-03-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        717.646 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UTR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QGB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UTR C1  C4  C 0 1 Y N N N N N 20.482 11.230 13.099 3.835  -3.259 -0.600 C1  UTR 1  
UTR C2  C5  C 0 1 Y N N N N N 20.311 12.341 12.452 3.861  -4.386 -1.442 C2  UTR 2  
UTR C3  C6  C 0 1 Y N N N N N 21.370 13.036 12.015 5.111  -4.840 -1.903 C3  UTR 3  
UTR C4  C8  C 0 1 Y N N N N N 18.479 11.490 12.905 1.779  -3.996 -0.950 C4  UTR 4  
UTR N1  N1  N 0 1 Y N N N N N 22.550 12.639 12.255 6.202  -4.186 -1.520 N1  UTR 5  
UTR N2  N3  N 0 1 Y N N N N N 21.682 10.821 13.322 4.981  -2.671 -0.272 N2  UTR 6  
UTR C5  C1* C 0 1 N N R N N N 16.831 8.290  8.985  -5.690 -0.129 0.553  C5  UTR 7  
UTR C6  C2  C 0 1 Y N N N N N 22.707 11.528 12.906 6.127  -3.133 -0.728 C6  UTR 8  
UTR C7  C2* C 0 1 N N R N N N 16.640 9.401  8.079  -6.883 -1.106 0.712  C7  UTR 9  
UTR C8  C3* C 0 1 N N S N N N 15.526 10.118 8.769  -6.207 -2.342 1.354  C8  UTR 10 
UTR C9  C4* C 0 1 N N R N N N 15.641 9.582  10.144 -4.715 -2.180 1.004  C9  UTR 11 
UTR C10 C5* C 0 1 N N N N N N 14.366 9.914  10.995 -4.232 -3.398 0.214  C10 UTR 12 
UTR C11 CAB C 0 1 N N R N N N 18.419 9.581  15.243 2.258  -2.274 2.046  C11 UTR 13 
UTR C12 CAC C 0 1 N N S N N N 18.113 8.140  15.417 2.243  -0.860 2.677  C12 UTR 14 
UTR C13 CAI C 0 1 N N R N N N 19.313 9.478  14.128 1.987  -1.967 0.552  C13 UTR 15 
UTR C14 CAK C 0 1 N N R N N N 18.135 7.653  14.076 2.510  0.085  1.489  C14 UTR 16 
UTR C15 CAL C 0 1 N N N N N N 16.727 7.690  13.617 3.766  0.916  1.758  C15 UTR 17 
UTR C16 CAN C 0 1 N N N N N N 16.250 5.515  12.600 5.080  2.627  0.626  C16 UTR 18 
UTR C17 CAO C 0 1 Y N N N N N 15.885 4.809  11.484 5.237  3.657  -0.426 C17 UTR 19 
UTR C18 CAP C 0 1 Y N N N N N 16.837 4.003  10.908 5.244  3.291  -1.768 C18 UTR 20 
UTR C19 CAQ C 0 1 Y N N N N N 16.586 3.239  9.809  5.391  4.256  -2.747 C19 UTR 21 
UTR C20 CAS C 0 1 Y N N N N N 18.415 4.249  7.431  -7.289 3.831  -1.846 C20 UTR 22 
UTR C21 CAT C 0 1 Y N N N N N 17.575 5.236  7.576  -6.639 2.597  -1.678 C21 UTR 23 
UTR C22 CAV C 0 1 Y N N N N N 16.023 6.582  7.532  -5.550 0.726  -1.817 C22 UTR 24 
UTR C23 CAZ C 0 1 Y N N N N N 14.631 4.843  10.911 5.373  5.013  -0.074 C23 UTR 25 
UTR C24 CBA C 0 1 Y N N N N N 14.393 4.077  9.807  5.521  5.971  -1.073 C24 UTR 26 
UTR C25 CBB C 0 1 Y N N N N N 15.355 3.284  9.257  5.531  5.588  -2.401 C25 UTR 27 
UTR C26 CBC C 0 1 Y N N N N N 19.870 5.290  8.828  -7.866 3.794  0.388  C26 UTR 28 
UTR C27 CBE C 0 1 Y N N N N N 17.874 6.256  8.323  -6.645 2.013  -0.400 C27 UTR 29 
UTR C28 CBL C 0 1 N N N N N N 13.608 5.571  11.407 5.361  5.417  1.348  C28 UTR 30 
UTR C29 CBS C 0 1 N N N N N N 15.012 10.843 13.235 -2.282 -4.339 -0.815 C29 UTR 31 
UTR C30 CBT C 0 1 N N N N N N 16.452 11.170 13.075 -0.816 -4.215 -0.863 C30 UTR 32 
UTR C31 CBU C 0 1 N N N N N N 17.193 11.307 13.003 0.353  -4.117 -0.902 C31 UTR 33 
UTR N3  N6  N 0 1 N N N N N N 21.192 14.137 11.371 5.201  -5.943 -2.733 N3  UTR 34 
UTR N4  N7  N 0 1 Y N N N N N 19.039 12.493 12.351 2.584  -4.789 -1.619 N4  UTR 35 
UTR N5  N9  N 0 1 Y N N N N N 19.367 10.698 13.395 2.514  -3.036 -0.299 N5  UTR 36 
UTR N6  NAF N 0 1 N N N N N N 18.056 3.279  6.677  -7.316 4.454  -3.082 N6  UTR 37 
UTR N7  NAM N 0 1 N N N N N N 16.369 6.807  12.534 3.974  1.857  0.655  N7  UTR 38 
UTR N8  NAR N 0 1 Y N N N N N 19.540 4.258  8.050  -7.882 4.383  -0.793 N8  UTR 39 
UTR N9  NAU N 0 1 Y N N N N N 16.417 5.459  7.096  -5.955 1.761  -2.495 N9  UTR 40 
UTR N10 NBD N 0 1 Y N N N N N 19.008 6.294  8.950  -7.261 2.643  0.595  N10 UTR 41 
UTR N11 NBF N 0 1 Y N N N N N 16.912 7.084  8.291  -5.951 0.835  -0.519 N11 UTR 42 
UTR O1  O2* O 0 1 N N N N N N 17.788 10.131 8.089  -7.877 -0.559 1.581  O1  UTR 43 
UTR O2  O3* O 0 1 N N N N N N 15.721 11.433 8.750  -6.392 -2.333 2.771  O2  UTR 44 
UTR O3  O4* O 0 1 N N N N N N 15.734 8.338  9.759  -4.590 -0.995 0.200  O3  UTR 45 
UTR O4  O5* O 0 1 N N N N N N 14.506 9.801  12.397 -2.820 -3.304 0.010  O4  UTR 46 
UTR O5  OAA O 0 1 N N N N N N 19.004 10.022 16.315 1.221  -3.089 2.596  O5  UTR 47 
UTR O6  OAD O 0 1 N N N N N N 19.074 7.573  16.123 0.966  -0.586 3.258  O6  UTR 48 
UTR O7  OAE O 0 1 N N N N N N 16.503 4.900  13.570 5.948  2.477  1.463  O7  UTR 49 
UTR O8  OAJ O 0 1 N N N N N N 18.597 8.656  13.381 2.705  -0.735 0.325  O8  UTR 50 
UTR O9  OBM O 0 1 N N N N N N 12.796 6.071  10.688 5.121  4.596  2.211  O9  UTR 51 
UTR O10 OBV O 0 1 N N N N N N 13.470 5.680  12.590 5.615  6.696  1.687  O10 UTR 52 
UTR H1  H1  H 0 1 N N N N N N 17.743 8.451  9.579  -5.489 0.388  1.492  H1  UTR 53 
UTR H2  H2  H 0 1 N N N N N N 23.707 11.175 13.111 7.039  -2.631 -0.442 H2  UTR 54 
UTR H3  H3  H 0 1 N N N N N N 16.340 9.068  7.074  -7.312 -1.357 -0.258 H3  UTR 55 
UTR H4  H4  H 0 1 N N N N N N 14.561 9.827  8.328  -6.603 -3.260 0.922  H4  UTR 56 
UTR H5  H5  H 0 1 N N N N N N 16.540 9.967  10.648 -4.129 -2.075 1.918  H5  UTR 57 
UTR H6  H6  H 0 1 N N N N N N 14.072 10.950 10.769 -4.458 -4.307 0.772  H6  UTR 58 
UTR H7  H7  H 0 1 N N N N N N 13.565 9.229  10.681 -4.737 -3.429 -0.751 H7  UTR 59 
UTR H8  H8  H 0 1 N N N N N N 17.510 10.139 14.976 3.232  -2.747 2.176  H8  UTR 60 
UTR H9  H9  H 0 1 N N N N N N 17.118 8.013  15.868 3.031  -0.767 3.423  H9  UTR 61 
UTR H10 H10 H 0 1 N N N N N N 20.307 9.101  14.410 0.920  -1.829 0.376  H10 UTR 62 
UTR H11 H11 H 0 1 N N N N N N 18.623 6.676  13.944 1.654  0.744  1.341  H11 UTR 63 
UTR H12 H12 H 0 1 N N N N N N 16.090 7.435  14.477 3.644  1.469  2.689  H12 UTR 64 
UTR H13 H13 H 0 1 N N N N N N 16.510 8.718  13.292 4.628  0.254  1.838  H13 UTR 65 
UTR H14 H14 H 0 1 N N N N N N 17.824 3.974  11.345 5.136  2.252  -2.045 H14 UTR 66 
UTR H15 H15 H 0 1 N N N N N N 17.356 2.610  9.388  5.397  3.968  -3.788 H15 UTR 67 
UTR H16 H16 H 0 1 N N N N N N 15.076 7.043  7.295  -4.981 -0.097 -2.223 H16 UTR 68 
UTR H17 H17 H 0 1 N N N N N N 13.412 4.100  9.355  5.626  7.013  -0.811 H17 UTR 69 
UTR H18 H18 H 0 1 N N N N N N 15.133 2.693  8.381  5.646  6.334  -3.174 H18 UTR 70 
UTR H19 H19 H 0 1 N N N N N N 20.817 5.309  9.347  -8.360 4.278  1.218  H19 UTR 71 
UTR H20 H20 H 0 1 N N N N N N 14.850 10.542 14.280 -2.688 -4.249 -1.822 H20 UTR 72 
UTR H21 H21 H 0 1 N N N N N N 14.435 11.755 13.023 -2.551 -5.311 -0.400 H21 UTR 73 
UTR H22 H22 H 0 1 N N N N N N 22.079 14.538 11.143 4.397  -6.413 -3.005 H22 UTR 74 
UTR H23 H23 H 0 1 N N N N N N 20.684 13.953 10.530 6.068  -6.247 -3.044 H23 UTR 75 
UTR H24 H24 H 0 1 N N N N N N 18.772 2.581  6.667  -6.883 4.039  -3.844 H24 UTR 76 
UTR H25 H25 H 0 1 N N N N N N 17.208 2.881  7.027  -7.768 5.306  -3.186 H25 UTR 77 
UTR H26 H26 H 0 1 N N N N N N 16.195 7.231  11.645 3.316  1.926  -0.054 H26 UTR 78 
UTR H27 H27 H 0 1 N N N N N N 17.697 10.872 7.502  -8.644 -1.134 1.712  H27 UTR 79 
UTR H28 H28 H 0 1 N N N N N N 15.002 11.867 9.194  -7.318 -2.373 3.047  H28 UTR 80 
UTR H29 H29 H 0 1 N N N N N N 19.203 10.945 16.211 1.298  -3.235 3.549  H29 UTR 81 
UTR H30 H30 H 0 1 N N N N N N 18.881 6.650  16.237 0.722  -1.189 3.973  H30 UTR 82 
UTR H31 H31 H 0 1 N N N N N N 12.683 6.180  12.773 5.595  6.913  2.629  H31 UTR 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UTR C1  C2  DOUB Y N 1  
UTR C1  N2  SING Y N 2  
UTR C1  N5  SING Y N 3  
UTR C2  C3  SING Y N 4  
UTR C2  N4  SING Y N 5  
UTR C3  N1  DOUB Y N 6  
UTR C3  N3  SING N N 7  
UTR C4  C31 SING N N 8  
UTR C4  N4  DOUB Y N 9  
UTR C4  N5  SING Y N 10 
UTR N1  C6  SING Y N 11 
UTR N2  C6  DOUB Y N 12 
UTR C5  C7  SING N N 13 
UTR C5  N11 SING N N 14 
UTR C5  O3  SING N N 15 
UTR C7  C8  SING N N 16 
UTR C7  O1  SING N N 17 
UTR C8  C9  SING N N 18 
UTR C8  O2  SING N N 19 
UTR C9  C10 SING N N 20 
UTR C9  O3  SING N N 21 
UTR C10 O4  SING N N 22 
UTR C11 C12 SING N N 23 
UTR C11 C13 SING N N 24 
UTR C11 O5  SING N N 25 
UTR C12 C14 SING N N 26 
UTR C12 O6  SING N N 27 
UTR C13 N5  SING N N 28 
UTR C13 O8  SING N N 29 
UTR C14 C15 SING N N 30 
UTR C14 O8  SING N N 31 
UTR C15 N7  SING N N 32 
UTR C16 C17 SING N N 33 
UTR C16 N7  SING N N 34 
UTR C16 O7  DOUB N N 35 
UTR C17 C18 DOUB Y N 36 
UTR C17 C23 SING Y N 37 
UTR C18 C19 SING Y N 38 
UTR C19 C25 DOUB Y N 39 
UTR C20 C21 DOUB Y N 40 
UTR C20 N6  SING N N 41 
UTR C20 N8  SING Y N 42 
UTR C21 C27 SING Y N 43 
UTR C21 N9  SING Y N 44 
UTR C22 N9  DOUB Y N 45 
UTR C22 N11 SING Y N 46 
UTR C23 C24 DOUB Y N 47 
UTR C23 C28 SING N N 48 
UTR C24 C25 SING Y N 49 
UTR C26 N8  DOUB Y N 50 
UTR C26 N10 SING Y N 51 
UTR C27 N10 DOUB Y N 52 
UTR C27 N11 SING Y N 53 
UTR C28 O9  DOUB N N 54 
UTR C28 O10 SING N N 55 
UTR C29 C30 SING N N 56 
UTR C29 O4  SING N N 57 
UTR C31 C30 TRIP N N 58 
UTR C5  H1  SING N N 59 
UTR C6  H2  SING N N 60 
UTR C7  H3  SING N N 61 
UTR C8  H4  SING N N 62 
UTR C9  H5  SING N N 63 
UTR C10 H6  SING N N 64 
UTR C10 H7  SING N N 65 
UTR C11 H8  SING N N 66 
UTR C12 H9  SING N N 67 
UTR C13 H10 SING N N 68 
UTR C14 H11 SING N N 69 
UTR C15 H12 SING N N 70 
UTR C15 H13 SING N N 71 
UTR C18 H14 SING N N 72 
UTR C19 H15 SING N N 73 
UTR C22 H16 SING N N 74 
UTR C24 H17 SING N N 75 
UTR C25 H18 SING N N 76 
UTR C26 H19 SING N N 77 
UTR C29 H20 SING N N 78 
UTR C29 H21 SING N N 79 
UTR N3  H22 SING N N 80 
UTR N3  H23 SING N N 81 
UTR N6  H24 SING N N 82 
UTR N6  H25 SING N N 83 
UTR N7  H26 SING N N 84 
UTR O1  H27 SING N N 85 
UTR O2  H28 SING N N 86 
UTR O5  H29 SING N N 87 
UTR O6  H30 SING N N 88 
UTR O10 H31 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UTR InChI            InChI                1.06  "InChI=1S/C31H31N11O10/c32-24-18-26(37-10-35-24)41(12-39-18)29-22(45)21(44)16(52-29)9-50-7-3-6-17-40-19-25(33)36-11-38-27(19)42(17)30-23(46)20(43)15(51-30)8-34-28(47)13-4-1-2-5-14(13)31(48)49/h1-2,4-5,10-12,15-16,20-23,29-30,43-46H,7-9H2,(H,34,47)(H,48,49)(H2,32,35,37)(H2,33,36,38)/t15-,16-,20-,21-,22-,23-,29-,30-/m1/s1" 
UTR InChIKey         InChI                1.06  NRNHLMJONNXRGX-OJLPNRDSSA-N                                                                                                                                                                                                                                                                                                        
UTR SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COCC#Cc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CNC(=O)c7ccccc7C(O)=O)[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O"                                                                                                                                                                                                        
UTR SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](COCC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CNC(=O)c7ccccc7C(O)=O)[CH](O)[CH]6O)[CH](O)[CH]3O"                                                                                                                                                                                                                    
UTR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)n3c(nc4c3ncnc4N)C#CCOC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O)O)C(=O)O"                                                                                                                                                                                                  
UTR SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(=O)NCC2C(C(C(O2)n3c(nc4c3ncnc4N)C#CCOCC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O)O)C(=O)O"                                                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           UTR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylcarbamoyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UTR "Create component" 2023-09-07 PDBE 
UTR "Initial release"  2025-03-19 RCSB 
# 
