data_ZVR
# 
_chem_comp.id                                    ZVR 
_chem_comp.name                                  "N-{4-[3-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)propyl]-2-fluorobenzoyl}-L-glutamic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H22 F N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-06 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        459.428 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZVR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GKY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZVR C20 C1  C 0 1 N N S N N N -36.749 75.792 3.725 5.343  0.045  1.045  C20 ZVR 1  
ZVR C23 C2  C 0 1 N N N N N N -38.862 77.427 0.907 7.136  2.035  -1.691 C23 ZVR 2  
ZVR C26 C3  C 0 1 N N N N N N -36.617 76.497 5.085 5.201  0.287  2.525  C26 ZVR 3  
ZVR C29 C4  C 0 1 N N N N N N -34.696 65.923 5.574 -4.324 -1.344 -1.565 C29 ZVR 4  
ZVR C17 C5  C 0 1 N N N N N N -37.390 73.263 3.267 3.349  -1.215 0.432  C17 ZVR 5  
ZVR N19 N1  N 0 1 N N N N N N -36.727 74.353 3.979 4.014  -0.043 0.435  N19 ZVR 6  
ZVR C13 C6  C 0 1 Y N N N N N -36.138 71.692 4.794 1.317  -2.519 -0.188 C13 ZVR 7  
ZVR C32 C7  C 0 1 Y N N N N N -36.615 69.345 4.977 -0.503 -1.469 -1.340 C32 ZVR 8  
ZVR C12 C8  C 0 1 Y N N N N N -37.136 71.847 3.837 2.009  -1.303 -0.183 C12 ZVR 9  
ZVR C02 C9  C 0 1 N N N N N N -38.846 63.499 3.618 -7.052 2.329  0.918  C02 ZVR 10 
ZVR C04 C10 C 0 1 N N N N N N -36.828 64.614 3.523 -5.463 1.509  -0.617 C04 ZVR 11 
ZVR C05 C11 C 0 1 Y N N N N N -37.634 64.360 7.009 -6.887 -1.354 1.001  C05 ZVR 12 
ZVR C06 C12 C 0 1 Y N N N N N -36.419 65.035 7.084 -6.022 -1.978 0.177  C06 ZVR 13 
ZVR C08 C13 C 0 1 Y N N N N N -36.812 64.700 4.950 -5.789 0.204  -0.203 C08 ZVR 14 
ZVR C09 C14 C 0 1 Y N N N N N -37.878 64.148 5.623 -6.766 0.036  0.786  C09 ZVR 15 
ZVR C14 C15 C 0 1 Y N N N N N -37.895 70.748 3.451 1.427  -0.174 -0.761 C14 ZVR 16 
ZVR C15 C16 C 0 1 Y N N N N N -35.869 70.447 5.366 0.065  -2.593 -0.770 C15 ZVR 17 
ZVR C16 C17 C 0 1 Y N N N N N -37.624 69.497 4.025 0.176  -0.263 -1.333 C16 ZVR 18 
ZVR C21 C18 C 0 1 N N N N N N -38.007 76.291 3.026 6.120  1.201  0.411  C21 ZVR 19 
ZVR C22 C19 C 0 1 N N N N N N -37.653 77.088 1.777 6.371  0.897  -1.067 C22 ZVR 20 
ZVR C30 C20 C 0 1 N N N N N N -34.892 67.450 5.386 -2.938 -1.254 -0.923 C30 ZVR 21 
ZVR C31 C21 C 0 1 N N N N N N -36.329 67.962 5.610 -1.868 -1.558 -1.973 C31 ZVR 22 
ZVR F33 F1  F 0 1 N N N N N N -35.406 72.776 5.176 1.872  -3.617 0.369  F33 ZVR 23 
ZVR N01 N2  N 0 1 N N N N N N -38.882 63.553 4.939 -7.368 1.120  1.316  N01 ZVR 24 
ZVR N03 N3  N 0 1 N N N N N N -37.840 64.019 2.914 -6.108 2.548  -0.042 N03 ZVR 25 
ZVR N07 N4  N 0 1 Y N N N N N -35.949 65.233 5.865 -5.348 -1.053 -0.559 N07 ZVR 26 
ZVR N11 N5  N 0 1 N N N N N N -39.948 62.849 2.924 -7.695 3.406  1.480  N11 ZVR 27 
ZVR O10 O1  O 0 1 N N N N N N -35.946 65.070 2.871 -4.618 1.698  -1.475 O10 ZVR 28 
ZVR O18 O2  O 0 1 N N N N N N -38.112 73.423 2.334 3.853  -2.201 0.935  O18 ZVR 29 
ZVR O24 O3  O 0 1 N N N N N N -39.749 76.562 0.673 7.471  1.987  -2.990 O24 ZVR 30 
ZVR O25 O4  O 0 1 N N N N N N -38.965 78.581 0.414 7.448  2.992  -1.022 O25 ZVR 31 
ZVR O27 O5  O 0 1 N N N N N N -37.640 76.974 5.648 4.103  0.376  3.021  O27 ZVR 32 
ZVR O28 O6  O 0 1 N N N N N N -35.491 76.594 5.651 6.296  0.402  3.294  O28 ZVR 33 
ZVR H1  H1  H 0 1 N N N N N N -35.879 76.065 3.110 5.881  -0.888 0.878  H1  ZVR 34 
ZVR H2  H2  H 0 1 N N N N N N -34.269 65.505 4.650 -4.395 -0.620 -2.377 H2  ZVR 35 
ZVR H3  H3  H 0 1 N N N N N N -33.999 65.756 6.408 -4.477 -2.349 -1.959 H3  ZVR 36 
ZVR H4  H4  H 0 1 N N N N N N -36.172 74.071 4.762 3.612  0.744  0.033  H4  ZVR 37 
ZVR H5  H5  H 0 1 N N N N N N -38.263 64.059 7.834 -7.555 -1.832 1.702  H5  ZVR 38 
ZVR H6  H6  H 0 1 N N N N N N -35.935 65.348 7.997 -5.884 -3.047 0.112  H6  ZVR 39 
ZVR H7  H7  H 0 1 N N N N N N -38.682 70.856 2.720 1.956  0.768  -0.761 H7  ZVR 40 
ZVR H8  H8  H 0 1 N N N N N N -35.088 70.343 6.104 -0.470 -3.531 -0.779 H8  ZVR 41 
ZVR H9  H9  H 0 1 N N N N N N -38.206 68.638 3.725 -0.275 0.611  -1.781 H9  ZVR 42 
ZVR H10 H10 H 0 1 N N N N N N -38.572 76.935 3.716 5.540  2.120  0.499  H10 ZVR 43 
ZVR H11 H11 H 0 1 N N N N N N -38.626 75.428 2.740 7.073  1.323  0.925  H11 ZVR 44 
ZVR H12 H12 H 0 1 N N N N N N -36.946 76.497 1.176 5.418  0.775  -1.581 H12 ZVR 45 
ZVR H13 H13 H 0 1 N N N N N N -37.173 78.028 2.088 6.951  -0.022 -1.155 H13 ZVR 46 
ZVR H14 H14 H 0 1 N N N N N N -34.232 67.968 6.098 -2.785 -0.249 -0.529 H14 ZVR 47 
ZVR H15 H15 H 0 1 N N N N N N -34.596 67.707 4.358 -2.866 -1.978 -0.111 H15 ZVR 48 
ZVR H16 H16 H 0 1 N N N N N N -36.504 68.036 6.693 -1.940 -0.834 -2.785 H16 ZVR 49 
ZVR H17 H17 H 0 1 N N N N N N -37.027 67.232 5.174 -2.021 -2.563 -2.367 H17 ZVR 50 
ZVR H18 H18 H 0 1 N N N N N N -37.851 63.958 1.916 -5.898 3.455  -0.313 H18 ZVR 51 
ZVR H19 H19 H 0 1 N N N N N N -40.706 62.458 3.446 -8.371 3.265  2.161  H19 ZVR 52 
ZVR H20 H20 H 0 1 N N N N N N -39.947 62.794 1.926 -7.472 4.306  1.196  H20 ZVR 53 
ZVR H21 H21 H 0 1 N N N N N N -40.419 76.938 0.114 7.962  2.741  -3.345 H21 ZVR 54 
ZVR H22 H22 H 0 1 N N N N N N -35.591 77.047 6.480 6.155  0.556  4.238  H22 ZVR 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZVR O25 C23 DOUB N N 1  
ZVR O24 C23 SING N N 2  
ZVR C23 C22 SING N N 3  
ZVR C22 C21 SING N N 4  
ZVR O18 C17 DOUB N N 5  
ZVR O10 C04 DOUB N N 6  
ZVR N03 C04 SING N N 7  
ZVR N03 C02 SING N N 8  
ZVR N11 C02 SING N N 9  
ZVR C21 C20 SING N N 10 
ZVR C17 C12 SING N N 11 
ZVR C17 N19 SING N N 12 
ZVR C14 C12 DOUB Y N 13 
ZVR C14 C16 SING Y N 14 
ZVR C04 C08 SING N N 15 
ZVR C02 N01 DOUB N N 16 
ZVR C20 N19 SING N N 17 
ZVR C20 C26 SING N N 18 
ZVR C12 C13 SING Y N 19 
ZVR C16 C32 DOUB Y N 20 
ZVR C13 F33 SING N N 21 
ZVR C13 C15 DOUB Y N 22 
ZVR N01 C09 SING N N 23 
ZVR C08 C09 DOUB Y N 24 
ZVR C08 N07 SING Y N 25 
ZVR C32 C15 SING Y N 26 
ZVR C32 C31 SING N N 27 
ZVR C26 O27 DOUB N N 28 
ZVR C26 O28 SING N N 29 
ZVR C30 C29 SING N N 30 
ZVR C30 C31 SING N N 31 
ZVR C29 N07 SING N N 32 
ZVR C09 C05 SING Y N 33 
ZVR N07 C06 SING Y N 34 
ZVR C05 C06 DOUB Y N 35 
ZVR C20 H1  SING N N 36 
ZVR C29 H2  SING N N 37 
ZVR C29 H3  SING N N 38 
ZVR N19 H4  SING N N 39 
ZVR C05 H5  SING N N 40 
ZVR C06 H6  SING N N 41 
ZVR C14 H7  SING N N 42 
ZVR C15 H8  SING N N 43 
ZVR C16 H9  SING N N 44 
ZVR C21 H10 SING N N 45 
ZVR C21 H11 SING N N 46 
ZVR C22 H12 SING N N 47 
ZVR C22 H13 SING N N 48 
ZVR C30 H14 SING N N 49 
ZVR C30 H15 SING N N 50 
ZVR C31 H16 SING N N 51 
ZVR C31 H17 SING N N 52 
ZVR N03 H18 SING N N 53 
ZVR N11 H19 SING N N 54 
ZVR N11 H20 SING N N 55 
ZVR O24 H21 SING N N 56 
ZVR O28 H22 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZVR SMILES           ACDLabs              12.01 "O=C(O)C(CCC(=O)O)NC(=O)c1ccc(cc1F)CCCn1ccc2N=C(N)NC(=O)c21"                                                                                                                                                  
ZVR InChI            InChI                1.06  "InChI=1S/C21H22FN5O6/c22-13-10-11(2-1-8-27-9-7-14-17(27)19(31)26-21(23)25-14)3-4-12(13)18(30)24-15(20(32)33)5-6-16(28)29/h3-4,7,9-10,15H,1-2,5-6,8H2,(H,24,30)(H,28,29)(H,32,33)(H3,23,25,26,31)/t15-/m0/s1" 
ZVR InChIKey         InChI                1.06  VOXSIQHYUGLGIP-HNNXBMFYSA-N                                                                                                                                                                                   
ZVR SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2ccn(CCCc3ccc(c(F)c3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)c2C(=O)N1"                                                                                                                                           
ZVR SMILES           CACTVS               3.385 "NC1=Nc2ccn(CCCc3ccc(c(F)c3)C(=O)N[CH](CCC(O)=O)C(O)=O)c2C(=O)N1"                                                                                                                                             
ZVR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)N[C@@H](CCC(=O)O)C(=O)O"                                                                                                                                           
ZVR SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCn2ccc3c2C(=O)NC(=N3)N)F)C(=O)NC(CCC(=O)O)C(=O)O"                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZVR "SYSTEMATIC NAME" ACDLabs              12.01 "N-{4-[3-(2-amino-4-oxo-3,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)propyl]-2-fluorobenzoyl}-L-glutamic acid"                              
ZVR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[4-[3-(2-azanyl-4-oxidanylidene-3~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)propyl]-2-fluoranyl-phenyl]carbonylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZVR "Create component" 2023-04-06 RCSB 
ZVR "Initial release"  2024-03-20 RCSB 
# 
