data_5GS
# 
_chem_comp.id                                    5GS 
_chem_comp.name                                  
;2'-C-methyluridine 5'-(trihydrogen diphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N2 O12 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-10-30 
_chem_comp.pdbx_modified_date                    2015-02-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        418.188 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5GS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WTF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5GS C2    C1  C 0 1 N N N 39.568 -46.582 8.664  -4.695 0.679  0.944  C2    5GS 1  
5GS C5    C2  C 0 1 N N N 42.069 -45.451 8.742  -3.976 2.458  -0.986 C5    5GS 2  
5GS C4    C3  C 0 1 N N N 41.229 -45.505 9.877  -5.222 2.570  -0.322 C4    5GS 3  
5GS N3    N1  N 0 1 N N N 39.989 -46.063 9.831  -5.547 1.672  0.629  N3    5GS 4  
5GS N1    N2  N 0 1 N N N 40.390 -46.567 7.482  -3.508 0.562  0.321  N1    5GS 5  
5GS C6    C4  C 0 1 N N N 41.624 -45.998 7.535  -3.140 1.453  -0.650 C6    5GS 6  
5GS O4    O1  O 0 1 N N N 41.627 -44.981 11.064 -5.992 3.469  -0.608 O4    5GS 7  
5GS O2    O2  O 0 1 N N N 38.332 -47.131 8.652  -5.000 -0.121 1.808  O2    5GS 8  
5GS O2B   O3  O 0 1 N N N 42.955 -44.218 1.364  6.364  -0.388 1.013  O2B   5GS 9  
5GS PB    PB1 P 0 1 N N N 42.857 -43.164 2.468  5.554  0.922  0.543  PB    5GS 10 
5GS O3B   O4  O 0 1 N N N 41.440 -42.939 2.973  5.763  2.098  1.623  O3B   5GS 11 
5GS O1B   O5  O 0 1 N N N 43.543 -41.816 2.247  6.059  1.367  -0.775 O1B   5GS 12 
5GS O3A   O6  O 0 1 N N N 43.669 -43.762 3.735  3.987  0.572  0.426  O3A   5GS 13 
5GS PA    PA1 P 0 1 N N N 44.353 -45.220 3.859  3.100  -0.248 -0.639 PA    5GS 14 
5GS O1A   O7  O 0 1 N N N 45.226 -45.204 5.069  3.786  -1.514 -0.981 O1A   5GS 15 
5GS O2A   O8  O 0 1 N N N 44.918 -45.732 2.544  2.909  0.637  -1.970 O2A   5GS 16 
5GS "O5'" O9  O 0 1 N N N 43.083 -46.074 4.334  1.659  -0.574 0.001  "O5'" 5GS 17 
5GS "C5'" C5  C 0 1 N N N 42.191 -46.775 3.447  0.680  -1.380 -0.657 "C5'" 5GS 18 
5GS "C4'" C6  C 0 1 N N R 40.804 -46.904 4.071  -0.567 -1.487 0.223  "C4'" 5GS 19 
5GS "C3'" C7  C 0 1 N N R 40.201 -45.558 4.430  -1.590 -2.456 -0.411 "C3'" 5GS 20 
5GS "O3'" O10 O 0 1 N N N 39.692 -44.781 3.335  -1.497 -3.748 0.192  "O3'" 5GS 21 
5GS "C2'" C8  C 0 1 N N R 39.145 -45.982 5.452  -2.960 -1.811 -0.100 "C2'" 5GS 22 
5GS C2M   C9  C 0 1 N N N 38.852 -44.726 6.263  -3.694 -1.459 -1.395 C2M   5GS 23 
5GS "O2'" O11 O 0 1 N N N 37.911 -46.507 4.859  -3.753 -2.686 0.705  "O2'" 5GS 24 
5GS "O4'" O12 O 0 1 N N N 40.799 -47.645 5.323  -1.250 -0.216 0.284  "O4'" 5GS 25 
5GS "C1'" C10 C 0 1 N N R 39.835 -47.117 6.237  -2.602 -0.530 0.686  "C1'" 5GS 26 
5GS H1    H1  H 0 1 N N N 43.044 -44.992 8.806  -3.698 3.168  -1.751 H1    5GS 27 
5GS H2    H2  H 0 1 N N N 39.406 -46.087 10.643 -6.399 1.741  1.088  H2    5GS 28 
5GS H3    H3  H 0 1 N N N 42.252 -45.969 6.657  -2.186 1.352  -1.146 H3    5GS 29 
5GS H4    H4  H 0 1 N N N 43.463 -43.872 0.639  6.085  -0.736 1.871  H4    5GS 30 
5GS H5    H5  H 0 1 N N N 41.274 -42.007 3.047  6.685  2.361  1.745  H5    5GS 31 
5GS H8    H8  H 0 1 N N N 45.822 -45.996 2.669  2.465  1.483  -1.820 H8    5GS 32 
5GS H9    H9  H 0 1 N N N 42.593 -47.780 3.249  0.414  -0.923 -1.610 H9    5GS 33 
5GS H10   H10 H 0 1 N N N 42.111 -46.219 2.501  1.088  -2.375 -0.833 H10   5GS 34 
5GS H11   H11 H 0 1 N N N 40.142 -47.403 3.348  -0.296 -1.823 1.224  H11   5GS 35 
5GS H12   H12 H 0 1 N N N 40.967 -44.973 4.960  -1.436 -2.523 -1.488 H12   5GS 36 
5GS H13   H13 H 0 1 N N N 39.339 -43.963 3.664  -0.635 -4.173 0.078  H13   5GS 37 
5GS H14   H14 H 0 1 N N N 38.094 -44.951 7.027  -3.874 -2.368 -1.969 H14   5GS 38 
5GS H15   H15 H 0 1 N N N 39.775 -44.382 6.753  -4.646 -0.985 -1.156 H15   5GS 39 
5GS H16   H16 H 0 1 N N N 38.476 -43.938 5.595  -3.084 -0.773 -1.983 H16   5GS 40 
5GS H17   H17 H 0 1 N N N 37.305 -46.749 5.550  -3.957 -3.532 0.283  H17   5GS 41 
5GS H18   H18 H 0 1 N N N 39.083 -47.883 6.477  -2.645 -0.718 1.758  H18   5GS 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5GS O2B   PB    SING N N 1  
5GS O1B   PB    DOUB N N 2  
5GS PB    O3B   SING N N 3  
5GS PB    O3A   SING N N 4  
5GS O2A   PA    SING N N 5  
5GS "O3'" "C3'" SING N N 6  
5GS "C5'" "C4'" SING N N 7  
5GS "C5'" "O5'" SING N N 8  
5GS O3A   PA    SING N N 9  
5GS PA    "O5'" SING N N 10 
5GS PA    O1A   DOUB N N 11 
5GS "C4'" "C3'" SING N N 12 
5GS "C4'" "O4'" SING N N 13 
5GS "C3'" "C2'" SING N N 14 
5GS "O2'" "C2'" SING N N 15 
5GS "O4'" "C1'" SING N N 16 
5GS "C2'" "C1'" SING N N 17 
5GS "C2'" C2M   SING N N 18 
5GS "C1'" N1    SING N N 19 
5GS N1    C6    SING N N 20 
5GS N1    C2    SING N N 21 
5GS C6    C5    DOUB N N 22 
5GS O2    C2    DOUB N N 23 
5GS C2    N3    SING N N 24 
5GS C5    C4    SING N N 25 
5GS N3    C4    SING N N 26 
5GS C4    O4    DOUB N N 27 
5GS C5    H1    SING N N 28 
5GS N3    H2    SING N N 29 
5GS C6    H3    SING N N 30 
5GS O2B   H4    SING N N 31 
5GS O3B   H5    SING N N 32 
5GS O2A   H8    SING N N 33 
5GS "C5'" H9    SING N N 34 
5GS "C5'" H10   SING N N 35 
5GS "C4'" H11   SING N N 36 
5GS "C3'" H12   SING N N 37 
5GS "O3'" H13   SING N N 38 
5GS C2M   H14   SING N N 39 
5GS C2M   H15   SING N N 40 
5GS C2M   H16   SING N N 41 
5GS "O2'" H17   SING N N 42 
5GS "C1'" H18   SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5GS SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)(C2O)C"                                                                                                                               
5GS InChI            InChI                1.03  "InChI=1S/C10H16N2O12P2/c1-10(16)7(14)5(4-22-26(20,21)24-25(17,18)19)23-8(10)12-3-2-6(13)11-9(12)15/h2-3,5,7-8,14,16H,4H2,1H3,(H,20,21)(H,11,13,15)(H2,17,18,19)/t5-,7-,8-,10-/m1/s1" 
5GS InChIKey         InChI                1.03  LFWWNDZBFDONAW-VPCXQMTMSA-N                                                                                                                                                           
5GS SMILES_CANONICAL CACTVS               3.385 "C[C@@]1(O)[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O"                                                                                                            
5GS SMILES           CACTVS               3.385 "C[C]1(O)[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O"                                                                                                                  
5GS SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@]1([C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                 
5GS SMILES           "OpenEye OEToolkits" 1.9.2 "CC1(C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5GS "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-C-methyluridine 5'-(trihydrogen diphosphate)
;
5GS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R,3R,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-methyl-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5GS "Create component" 2014-10-30 RCSB 
5GS "Initial release"  2015-02-11 RCSB 
# 
