data_5LS
#

_chem_comp.id                                   5LS
_chem_comp.name                                 "2,4-di-O-sulfo-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O12 S2"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        
;[(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-4,6-bis(oxidanyl)-5-sulfooxy-oxan-3-yl] hydrogen sulfate;
2,4-di-O-sulfo-alpha-D-glucose; 2,4-di-O-sulfo-D-glucose; 2,4-di-O-sulfo-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-10-20
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       340.282
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5LS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EBZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  5LS  "[(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-4,6-bis(oxidanyl)-5-sulfooxy-oxan-3-yl] hydrogen sulfate"  PDB  ?  
2  5LS  "2,4-di-O-sulfo-alpha-D-glucose"                                                                               PDB  ?  
3  5LS  "2,4-di-O-sulfo-D-glucose"                                                                                     PDB  ?  
4  5LS  "2,4-di-O-sulfo-glucose"                                                                                       PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5LS  C1   C1   C  0  1  N  N  S  92.348  81.893  -5.313   1.258  -1.714   0.126  C1   SC0   1  
5LS  O1   O1   O  0  1  N  Y  N  92.813  82.376  -6.513   1.294  -2.122   1.495  O1   SC0   2  
5LS  C2   C2   C  0  1  N  N  R  93.560  81.453  -4.421   1.309  -0.186   0.048  C2   SC0   3  
5LS  O2   O2   O  0  1  N  N  N  94.601  82.410  -4.576   2.487   0.287   0.703  O2   SC0   4  
5LS  C3   C3   C  0  1  N  N  S  94.120  80.057  -4.793   0.071   0.394   0.739  C3   SC0   5  
5LS  C4   C4   C  0  1  N  N  S  93.032  79.035  -5.141  -1.186  -0.181   0.078  C4   SC0   6  
5LS  C5   C5   C  0  1  N  N  R  92.116  79.679  -6.175  -1.140  -1.709   0.155  C5   SC0   7  
5LS  C6   C6   C  0  1  N  N  N  91.043  78.749  -6.749  -2.362  -2.293  -0.556  C6   SC0   8  
5LS  O3   O3   O  0  1  N  N  N  94.902  79.564  -3.710   0.072   1.817   0.606  O3   SC0   9  
5LS  O4   O4   O  0  1  N  N  N  93.632  77.855  -5.676  -2.346   0.297   0.761  O4   SC0  10  
5LS  O5   O5   O  0  1  N  N  N  91.453  80.806  -5.561   0.051  -2.181  -0.478  O5   SC0  11  
5LS  O6   O11  O  0  1  N  N  N  90.840  78.958  -8.147  -2.375  -3.713  -0.393  O6   SC0  12  
5LS  S1   S1   S  0  1  N  N  N  94.581  83.501  -3.526   3.664   0.522  -0.233  S1   SC0  13  
5LS  S2   S2   S  0  1  N  N  N  93.431  76.637  -4.796  -3.129   1.350  -0.010  S2   SC0  14  
5LS  O7   O7   O  0  1  N  N  N  95.785  84.394  -3.714   3.380   1.806  -1.000  O7   SC0  15  
5LS  O8   O8   O  0  1  N  N  N  94.627  82.889  -2.146   4.788   0.789   0.595  O8   SC0  16  
5LS  O9   O9   O  0  1  N  N  N  93.326  84.320  -3.681   3.634  -0.530  -1.187  O9   SC0  17  
5LS  O07  O07  O  0  1  N  N  N  93.998  76.901  -3.425  -3.853   0.635  -1.141  O07  SC0  18  
5LS  O08  O08  O  0  1  N  N  N  94.135  75.448  -5.404  -4.135   1.828   0.872  O08  SC0  19  
5LS  O09  O09  O  0  1  N  N  N  91.963  76.330  -4.686  -2.166   2.197  -0.623  O09  SC0  20  
5LS  H1   H1   H  0  1  N  N  N  91.812  82.686  -4.772   2.115  -2.134  -0.401  H1   SC0  21  
5LS  HO1  H2   H  0  1  N  Y  N  93.409  83.099  -6.354   1.265  -3.080   1.621  HO1  SC0  22  
5LS  H2   H3   H  0  1  N  N  N  93.224  81.425  -3.374   1.323   0.125  -0.997  H2   SC0  23  
5LS  H3   H4   H  0  1  N  N  N  94.762  80.180  -5.678   0.083   0.125   1.795  H3   SC0  24  
5LS  H4   H5   H  0  1  N  N  N  92.452  78.801  -4.236  -1.223   0.130  -0.966  H4   SC0  25  
5LS  H5   H6   H  0  1  N  N  N  92.738  80.036  -7.009  -1.144  -2.020   1.200  H5   SC0  26  
5LS  H61  H7   H  0  1  N  N  N  91.355  77.706  -6.588  -3.270  -1.870  -0.125  H61  SC0  27  
5LS  H62  H8   H  0  1  N  N  N  90.095  78.934  -6.222  -2.316  -2.050  -1.617  H62  SC0  28  
5LS  HO3  H13  H  0  1  N  Y  N  95.248  78.708  -3.933   0.844   2.248   0.997  HO3  SC0  29  
5LS  HO6  H9   H  0  1  N  Y  N  90.169  78.364  -8.462  -3.124  -4.151  -0.819  HO6  SC0  30  
5LS  H10  H10  H  0  1  N  N  N  95.497  85.282  -3.890   4.073   2.049  -1.629  H10  SC0  31  
5LS  H11  H11  H  0  1  N  N  N  94.677  76.264  -3.235  -4.386   1.219  -1.699  H11  SC0  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5LS  C1   O5   SING  N  N   1  
5LS  C1   O1   SING  N  N   2  
5LS  C1   C2   SING  N  N   3  
5LS  C2   O2   SING  N  N   4  
5LS  C2   C3   SING  N  N   5  
5LS  O2   S1   SING  N  N   6  
5LS  C3   C4   SING  N  N   7  
5LS  C3   O3   SING  N  N   8  
5LS  C4   C5   SING  N  N   9  
5LS  C4   O4   SING  N  N  10  
5LS  C5   C6   SING  N  N  11  
5LS  C5   O5   SING  N  N  12  
5LS  C6   O6   SING  N  N  13  
5LS  O4   S2   SING  N  N  14  
5LS  S1   O8   DOUB  N  N  15  
5LS  S1   O9   DOUB  N  N  16  
5LS  S1   O7   SING  N  N  17  
5LS  S2   O09  DOUB  N  N  18  
5LS  S2   O08  DOUB  N  N  19  
5LS  S2   O07  SING  N  N  20  
5LS  C1   H1   SING  N  N  21  
5LS  O1   HO1  SING  N  N  22  
5LS  C2   H2   SING  N  N  23  
5LS  C3   H3   SING  N  N  24  
5LS  C4   H4   SING  N  N  25  
5LS  C5   H5   SING  N  N  26  
5LS  C6   H61  SING  N  N  27  
5LS  C6   H62  SING  N  N  28  
5LS  O3   HO3  SING  N  N  29  
5LS  O6   HO6  SING  N  N  30  
5LS  O7   H10  SING  N  N  31  
5LS  O07  H11  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5LS  InChI             InChI                 1.03   "InChI=1S/C6H12O12S2/c7-1-2-4(17-19(10,11)12)3(8)5(6(9)16-2)18-20(13,14)15/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3+,4-,5-,6+/m1/s1"  
5LS  InChIKey          InChI                 1.03   JGSBCXNEVHAJNT-RXRWUWDJSA-N  
5LS  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O)[C@H](O[S](O)(=O)=O)[C@@H](O)[C@@H]1O[S](O)(=O)=O"  
5LS  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O)[CH]1O[S](O)(=O)=O"  
5LS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OS(=O)(=O)O)O)OS(=O)(=O)O)O"  
5LS  SMILES            "OpenEye OEToolkits"  2.0.4  "C(C1C(C(C(C(O1)O)OS(=O)(=O)O)O)OS(=O)(=O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          5LS
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-4,6-bis(oxidanyl)-5-sulfooxy-oxan-3-yl] hydrogen sulfate"
#
_pdbx_chem_comp_related.comp_id            5LS
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  5LS  C1   GLC  C1   "Carbohydrate core"  
 2  5LS  C2   GLC  C2   "Carbohydrate core"  
 3  5LS  C3   GLC  C3   "Carbohydrate core"  
 4  5LS  C4   GLC  C4   "Carbohydrate core"  
 5  5LS  C5   GLC  C5   "Carbohydrate core"  
 6  5LS  C6   GLC  C6   "Carbohydrate core"  
 7  5LS  O1   GLC  O1   "Carbohydrate core"  
 8  5LS  O6   GLC  O6   "Carbohydrate core"  
 9  5LS  O2   GLC  O2   "Carbohydrate core"  
10  5LS  O3   GLC  O3   "Carbohydrate core"  
11  5LS  O4   GLC  O4   "Carbohydrate core"  
12  5LS  O5   GLC  O5   "Carbohydrate core"  
13  5LS  H1   GLC  H1   "Carbohydrate core"  
14  5LS  HO3  GLC  HO3  "Carbohydrate core"  
15  5LS  HO1  GLC  HO1  "Carbohydrate core"  
16  5LS  H2   GLC  H2   "Carbohydrate core"  
17  5LS  H3   GLC  H3   "Carbohydrate core"  
18  5LS  H4   GLC  H4   "Carbohydrate core"  
19  5LS  H5   GLC  H5   "Carbohydrate core"  
20  5LS  H61  GLC  H61  "Carbohydrate core"  
21  5LS  H62  GLC  H62  "Carbohydrate core"  
22  5LS  HO6  GLC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5LS  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
5LS  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5LS  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
5LS  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5LS  "Create component"          2015-10-20  RCSB  
5LS  "Initial release"           2016-11-02  RCSB  
5LS  "Other modification"        2020-07-03  RCSB  
5LS  "Modify parent residue"     2020-07-17  RCSB  
5LS  "Modify name"               2020-07-17  RCSB  
5LS  "Modify synonyms"           2020-07-17  RCSB  
5LS  "Modify internal type"      2020-07-17  RCSB  
5LS  "Modify linking type"       2020-07-17  RCSB  
5LS  "Modify atom id"            2020-07-17  RCSB  
5LS  "Modify component atom id"  2020-07-17  RCSB  
5LS  "Modify leaving atom flag"  2020-07-17  RCSB  
##
