data_6GS
# 
_chem_comp.id                                    6GS 
_chem_comp.name                                  
;2'-deoxy-2'-fluoro-2'-methyluridine 5'-(trihydrogen diphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 F N2 O11 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-10-30 
_chem_comp.pdbx_modified_date                    2025-03-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        420.179 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6GS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WTG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6GS C2    C1  C 0 1 N N N N N N 39.123 -46.177 8.492  -4.674 0.705  0.937  C2    6GS 1  
6GS N3    N1  N 0 1 N N N N N N 39.586 -45.689 9.666  -5.517 1.707  0.628  N3    6GS 2  
6GS C4    C2  C 0 1 N N N N N N 40.788 -45.072 9.713  -5.182 2.610  -0.316 C4    6GS 3  
6GS C5    C3  C 0 1 N N N N N N 41.554 -44.931 8.556  -3.936 2.493  -0.978 C5    6GS 4  
6GS F     F1  F 0 1 N N N N N N 37.628 -45.896 4.586  -3.741 -2.645 0.659  F     6GS 5  
6GS "C2'" C4  C 0 1 N N R N N N 38.653 -45.408 5.270  -2.954 -1.788 -0.119 "C2'" 6GS 6  
6GS C2M   C5  C 0 1 N N N N N N 38.101 -44.222 6.067  -3.684 -1.419 -1.412 C2M   6GS 7  
6GS "C1'" C6  C 0 1 N N R N N N 39.309 -46.560 6.061  -2.589 -0.516 0.678  "C1'" 6GS 8  
6GS N1    N2  N 0 1 N N N N N N 39.842 -46.057 7.341  -3.485 0.585  0.319  N1    6GS 9  
6GS O2    O1  O 0 1 N N N N N N 37.912 -46.787 8.524  -4.990 -0.102 1.790  O2    6GS 10 
6GS O4    O2  O 0 1 N N N N N N 41.241 -44.590 10.892 -5.945 3.517  -0.597 O4    6GS 11 
6GS C6    C7  C 0 1 N N N N N N 41.048 -45.436 7.362  -3.110 1.478  -0.648 C6    6GS 12 
6GS "O4'" O3  O 0 1 N N N N N N 40.334 -47.082 5.201  -1.234 -0.210 0.283  "O4'" 6GS 13 
6GS "C3'" C8  C 0 1 N N R N N N 39.766 -44.980 4.320  -1.589 -2.441 -0.432 "C3'" 6GS 14 
6GS "O3'" O4  O 0 1 N N N N N N 39.316 -44.236 3.175  -1.509 -3.740 0.158  "O3'" 6GS 15 
6GS "C4'" C9  C 0 1 N N R N N N 40.382 -46.325 3.969  -0.560 -1.486 0.213  "C4'" 6GS 16 
6GS "C5'" C10 C 0 1 N N N N N N 41.764 -46.239 3.300  0.691  -1.382 -0.662 "C5'" 6GS 17 
6GS "O5'" O5  O 0 1 N N N N N N 42.789 -45.822 4.197  1.674  -0.589 0.006  "O5'" 6GS 18 
6GS PA    PA1 P 0 1 N N N N N N 43.966 -44.784 3.852  3.120  -0.269 -0.627 PA    6GS 19 
6GS O1A   O6  O 0 1 N N N N N N 44.721 -44.896 5.143  3.796  -1.538 -0.978 O1A   6GS 20 
6GS O2A   O7  O 0 1 N N N N N N 44.663 -45.124 2.550  2.940  0.628  -1.952 O2A   6GS 21 
6GS O3A   O8  O 0 1 N N N N N N 43.248 -43.322 3.769  4.010  0.534  0.448  O3A   6GS 22 
6GS PB    PB1 P 0 1 N N N N N N 42.419 -42.678 2.513  5.579  0.871  0.572  PB    6GS 23 
6GS O3B   O9  O 0 1 N N N N N N 41.019 -42.464 3.038  5.929  1.245  2.098  O3B   6GS 24 
6GS O1B   O10 O 0 1 N N N N N N 43.064 -41.318 2.261  6.371  -0.310 0.160  O1B   6GS 25 
6GS O2B   O11 O 0 1 N N N N N N 42.472 -43.708 1.392  5.938  2.117  -0.382 O2B   6GS 26 
6GS H1    H1  H 0 1 N N N N N N 39.040 -45.785 10.498 -6.369 1.781  1.086  H1    6GS 27 
6GS H2    H2  H 0 1 N N N N N N 42.516 -44.442 8.586  -3.651 3.206  -1.737 H2    6GS 28 
6GS H3    H3  H 0 1 N N N N N N 37.303 -44.571 6.739  -4.650 -0.976 -1.170 H3    6GS 29 
6GS H4    H4  H 0 1 N N N N N N 38.910 -43.772 6.661  -3.086 -0.703 -1.975 H4    6GS 30 
6GS H5    H5  H 0 1 N N N N N N 37.694 -43.472 5.373  -3.836 -2.317 -2.012 H5    6GS 31 
6GS H6    H6  H 0 1 N N N N N N 38.549 -47.331 6.256  -2.638 -0.712 1.749  H6    6GS 32 
6GS H7    H7  H 0 1 N N N N N N 41.617 -45.333 6.450  -2.157 1.370  -1.145 H7    6GS 33 
6GS H8    H8  H 0 1 N N N N N N 40.503 -44.390 4.884  -1.432 -2.501 -1.509 H8    6GS 34 
6GS H9    H9  H 0 1 N N N N N N 38.943 -43.410 3.460  -0.672 -4.196 -0.007 H9    6GS 35 
6GS H10   H10 H 0 1 N N N N N N 39.708 -46.810 3.247  -0.297 -1.831 1.213  H10   6GS 36 
6GS H11   H11 H 0 1 N N N N N N 42.025 -47.232 2.906  1.091  -2.379 -0.845 H11   6GS 37 
6GS H12   H12 H 0 1 N N N N N N 41.708 -45.518 2.471  0.431  -0.914 -1.612 H12   6GS 38 
6GS H14   H14 H 0 1 N N N N N N 45.559 -45.385 2.729  2.502  1.476  -1.796 H14   6GS 39 
6GS H15   H15 H 0 1 N N N N N N 40.842 -41.533 3.098  6.860  1.460  2.247  H15   6GS 40 
6GS H17   H17 H 0 1 N N N N N N 42.927 -43.340 0.644  5.455  2.927  -0.169 H17   6GS 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6GS O2B   PB    SING N N 1  
6GS O1B   PB    DOUB N N 2  
6GS PB    O3B   SING N N 3  
6GS PB    O3A   SING N N 4  
6GS O2A   PA    SING N N 5  
6GS "O3'" "C3'" SING N N 6  
6GS "C5'" "C4'" SING N N 7  
6GS "C5'" "O5'" SING N N 8  
6GS O3A   PA    SING N N 9  
6GS PA    "O5'" SING N N 10 
6GS PA    O1A   DOUB N N 11 
6GS "C4'" "C3'" SING N N 12 
6GS "C4'" "O4'" SING N N 13 
6GS "C3'" "C2'" SING N N 14 
6GS F     "C2'" SING N N 15 
6GS "O4'" "C1'" SING N N 16 
6GS "C2'" "C1'" SING N N 17 
6GS "C2'" C2M   SING N N 18 
6GS "C1'" N1    SING N N 19 
6GS N1    C6    SING N N 20 
6GS N1    C2    SING N N 21 
6GS C6    C5    DOUB N N 22 
6GS C2    O2    DOUB N N 23 
6GS C2    N3    SING N N 24 
6GS C5    C4    SING N N 25 
6GS N3    C4    SING N N 26 
6GS C4    O4    DOUB N N 27 
6GS N3    H1    SING N N 28 
6GS C5    H2    SING N N 29 
6GS C2M   H3    SING N N 30 
6GS C2M   H4    SING N N 31 
6GS C2M   H5    SING N N 32 
6GS "C1'" H6    SING N N 33 
6GS C6    H7    SING N N 34 
6GS "C3'" H8    SING N N 35 
6GS "O3'" H9    SING N N 36 
6GS "C4'" H10   SING N N 37 
6GS "C5'" H11   SING N N 38 
6GS "C5'" H12   SING N N 39 
6GS O2A   H14   SING N N 40 
6GS O3B   H15   SING N N 41 
6GS O2B   H17   SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6GS SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(F)(C2O)C"                                                                                                                             
6GS InChI            InChI                1.06  "InChI=1S/C10H15FN2O11P2/c1-10(11)7(15)5(4-22-26(20,21)24-25(17,18)19)23-8(10)13-3-2-6(14)12-9(13)16/h2-3,5,7-8,15H,4H2,1H3,(H,20,21)(H,12,14,16)(H2,17,18,19)/t5-,7-,8-,10-/m1/s1" 
6GS InChIKey         InChI                1.06  VPPLCOBQDZAMRD-VPCXQMTMSA-N                                                                                                                                                         
6GS SMILES_CANONICAL CACTVS               3.385 "C[C@@]1(F)[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O"                                                                                                          
6GS SMILES           CACTVS               3.385 "C[C]1(F)[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O"                                                                                                                
6GS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1([C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)OP(=O)(O)O)O)F"                                                                                                               
6GS SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)OP(=O)(O)O)O)F"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6GS "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-2'-fluoro-2'-methyluridine 5'-(trihydrogen diphosphate)
;
6GS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6GS 
_pdbx_chem_comp_pcm.modified_residue_id                ASN 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               PA 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   N 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6GS "Create component" 2014-10-30 RCSB 
6GS "Initial release"  2015-02-11 RCSB 
6GS "Modify PCM"       2025-03-25 PDBJ 
# 
