data_6LS
# 
_chem_comp.id                                    6LS 
_chem_comp.name                                  "heptyl 2-deoxy-alpha-D-mannopyranoside" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C13 H26 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-Deoxy-Heptylmannoside; heptyl 2-deoxy-alpha-D-mannoside; heptyl 2-deoxy-D-mannoside; heptyl 2-deoxy-mannoside" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-05-27 
_chem_comp.pdbx_modified_date                    2020-07-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        262.343 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6LS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5L4T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 6LS 2-Deoxy-Heptylmannoside            PDB ? 
2 6LS "heptyl 2-deoxy-alpha-D-mannoside" PDB ? 
3 6LS "heptyl 2-deoxy-D-mannoside"       PDB ? 
4 6LS "heptyl 2-deoxy-mannoside"         PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6LS O3  O3  O 0 1 N N N 20.775 77.271 82.253 -4.391 -2.035 -0.933 O3  6LS 1  
6LS C4  C4  C 0 1 N N S 22.235 75.355 81.946 -3.576 0.213  -0.559 C4  6LS 2  
6LS C5  C5  C 0 1 N N R 22.455 74.140 81.048 -2.371 1.005  -0.045 C5  6LS 3  
6LS O4  O4  O 0 1 N N N 23.409 76.158 81.973 -3.869 0.607  -1.901 O4  6LS 4  
6LS C6  C6  C 0 1 N N N 23.587 73.253 81.510 -2.714 2.496  -0.019 C6  6LS 5  
6LS O5  O5  O 0 1 N N N 21.267 73.329 81.039 -2.044 0.568  1.276  O5  6LS 6  
6LS O6  O6  O 0 1 N N N 23.347 72.739 82.812 -1.555 3.246  0.350  O6  6LS 7  
6LS CAR CAR C 0 1 N N N 23.545 72.645 71.342 7.974  0.420  -0.406 CAR 6LS 8  
6LS CAQ CAQ C 0 1 N N N 23.158 73.627 72.376 6.672  -0.206 -0.911 CAQ 6LS 9  
6LS CAP CAP C 0 1 N N N 22.637 72.938 73.610 5.537  0.122  0.060  CAP 6LS 10 
6LS CAO CAO C 0 1 N N N 22.231 73.880 74.722 4.236  -0.504 -0.445 CAO 6LS 11 
6LS CAN CAN C 0 1 N N N 21.782 73.149 75.973 3.101  -0.176 0.527  CAN 6LS 12 
6LS CAM CAM C 0 1 N N N 21.217 74.073 77.029 1.799  -0.802 0.021  CAM 6LS 13 
6LS CAL CAL C 0 1 N N N 20.714 73.359 78.252 0.664  -0.474 0.993  CAL 6LS 14 
6LS O1  O1  O 0 1 N N N 20.386 74.376 79.196 -0.551 -1.059 0.521  O1  6LS 15 
6LS C1  C1  C 0 1 N N S 20.133 74.010 80.515 -1.680 -0.811 1.361  C1  6LS 16 
6LS C2  C2  C 0 1 N N N 19.826 75.253 81.314 -2.857 -1.676 0.903  C2  6LS 17 
6LS C3  C3  C 0 1 N N R 21.050 76.147 81.416 -3.247 -1.283 -0.525 C3  6LS 18 
6LS HO3 H32 H 0 1 N Y N 21.547 77.821 82.309 -4.254 -2.993 -0.929 HO3 6LS 19 
6LS H4  H41 H 0 1 N N N 21.997 75.002 82.960 -4.439 0.410  0.075  H4  6LS 20 
6LS H5  H5  H 0 1 N N N 22.673 74.492 80.029 -1.519 0.840  -0.704 H5  6LS 21 
6LS HO4 H42 H 0 1 N Y N 23.265 76.912 82.533 -4.622 0.143  -2.292 HO4 6LS 22 
6LS H61 H62 H 0 1 N N N 23.692 72.413 80.808 -3.050 2.809  -1.007 H61 6LS 23 
6LS H62 H61 H 0 1 N N N 24.518 73.839 81.523 -3.508 2.673  0.708  H62 6LS 24 
6LS HO6 H63 H 0 1 N Y N 24.074 72.187 83.074 -1.700 4.201  0.387  HO6 6LS 25 
6LS HAR HAR H 0 1 N N N 23.921 73.175 70.454 7.854  1.501  -0.338 HAR 6LS 26 
6LS HAS HAS H 0 1 N N N 24.333 71.988 71.738 8.211  0.018  0.579  HAS 6LS 27 
6LS HAT HAT H 0 1 N N N 22.669 72.041 71.064 8.782  0.186  -1.098 HAT 6LS 28 
6LS HAQ HAQ H 0 1 N N N 24.037 74.230 72.646 6.435  0.196  -1.896 HAQ 6LS 29 
6LS HAU HAU H 0 1 N N N 22.373 74.283 71.972 6.792  -1.288 -0.979 HAU 6LS 30 
6LS HAV HAV H 0 1 N N N 21.758 72.340 73.326 5.775  -0.280 1.046  HAV 6LS 31 
6LS HAP HAP H 0 1 N N N 23.425 72.273 73.992 5.418  1.203  0.128  HAP 6LS 32 
6LS HAO HAO H 0 1 N N N 23.091 74.516 74.976 3.998  -0.102 -1.430 HAO 6LS 33 
6LS HAW HAW H 0 1 N N N 21.402 74.509 74.365 4.355  -1.586 -0.513 HAW 6LS 34 
6LS HAX HAX H 0 1 N N N 21.006 72.421 75.694 3.338  -0.578 1.512  HAX 6LS 35 
6LS HAN HAN H 0 1 N N N 22.647 72.619 76.398 2.981  0.905  0.595  HAN 6LS 36 
6LS HAM HAM H 0 1 N N N 22.008 74.773 77.337 1.562  -0.400 -0.964 HAM 6LS 37 
6LS HAY HAY H 0 1 N N N 20.381 74.635 76.587 1.919  -1.883 -0.047 HAY 6LS 38 
6LS HAZ HAZ H 0 1 N N N 19.822 72.764 78.007 0.902  -0.876 1.978  HAZ 6LS 39 
6LS HAL HAL H 0 1 N N N 21.495 72.699 78.657 0.545  0.607  1.061  HAL 6LS 40 
6LS H1  H1  H 0 1 N N N 19.256 73.347 80.558 -1.427 -1.057 2.392  H1  6LS 41 
6LS H2  H22 H 0 1 N N N 19.015 75.808 80.820 -2.567 -2.727 0.925  H2  6LS 42 
6LS H21 H21 H 0 1 N N N 19.507 74.961 82.326 -3.706 -1.518 1.568  H21 6LS 43 
6LS H3  H31 H 0 1 N N N 21.300 76.500 80.405 -2.415 -1.487 -1.200 H3  6LS 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6LS CAR CAQ SING N N 1  
6LS CAQ CAP SING N N 2  
6LS CAP CAO SING N N 3  
6LS CAO CAN SING N N 4  
6LS CAN CAM SING N N 5  
6LS CAM CAL SING N N 6  
6LS CAL O1  SING N N 7  
6LS O1  C1  SING N N 8  
6LS C1  O5  SING N N 9  
6LS C1  C2  SING N N 10 
6LS O5  C5  SING N N 11 
6LS C5  C6  SING N N 12 
6LS C5  C4  SING N N 13 
6LS C2  C3  SING N N 14 
6LS C3  C4  SING N N 15 
6LS C3  O3  SING N N 16 
6LS C6  O6  SING N N 17 
6LS C4  O4  SING N N 18 
6LS O3  HO3 SING N N 19 
6LS C4  H4  SING N N 20 
6LS C5  H5  SING N N 21 
6LS O4  HO4 SING N N 22 
6LS C6  H61 SING N N 23 
6LS C6  H62 SING N N 24 
6LS O6  HO6 SING N N 25 
6LS CAR HAR SING N N 26 
6LS CAR HAS SING N N 27 
6LS CAR HAT SING N N 28 
6LS CAQ HAQ SING N N 29 
6LS CAQ HAU SING N N 30 
6LS CAP HAV SING N N 31 
6LS CAP HAP SING N N 32 
6LS CAO HAO SING N N 33 
6LS CAO HAW SING N N 34 
6LS CAN HAX SING N N 35 
6LS CAN HAN SING N N 36 
6LS CAM HAM SING N N 37 
6LS CAM HAY SING N N 38 
6LS CAL HAZ SING N N 39 
6LS CAL HAL SING N N 40 
6LS C1  H1  SING N N 41 
6LS C2  H2  SING N N 42 
6LS C2  H21 SING N N 43 
6LS C3  H3  SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6LS InChI            InChI                1.03  "InChI=1S/C13H26O5/c1-2-3-4-5-6-7-17-12-8-10(15)13(16)11(9-14)18-12/h10-16H,2-9H2,1H3/t10-,11-,12+,13+/m1/s1" 
6LS InChIKey         InChI                1.03  IRECALVMQPMJAW-NDBYEHHHSA-N                                                                                   
6LS SMILES_CANONICAL CACTVS               3.385 "CCCCCCCO[C@@H]1C[C@@H](O)[C@H](O)[C@@H](CO)O1"                                                               
6LS SMILES           CACTVS               3.385 "CCCCCCCO[CH]1C[CH](O)[CH](O)[CH](CO)O1"                                                                      
6LS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CCCCCCCO[C@@H]1C[C@H]([C@@H]([C@H](O1)CO)O)O"                                                                
6LS SMILES           "OpenEye OEToolkits" 2.0.5 "CCCCCCCOC1CC(C(C(O1)CO)O)O"                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           6LS 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S},4~{R},6~{S})-6-heptoxy-2-(hydroxymethyl)oxane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
6LS "CARBOHYDRATE ISOMER"                 D        PDB ? 
6LS "CARBOHYDRATE RING"                   pyranose PDB ? 
6LS "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
6LS "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6LS "Create component"         2016-05-27 EBI  
6LS "Other modification"       2016-06-02 RCSB 
6LS "Initial release"          2017-06-21 RCSB 
6LS "Other modification"       2020-07-03 RCSB 
6LS "Modify name"              2020-07-17 RCSB 
6LS "Modify synonyms"          2020-07-17 RCSB 
6LS "Modify internal type"     2020-07-17 RCSB 
6LS "Modify linking type"      2020-07-17 RCSB 
6LS "Modify atom id"           2020-07-17 RCSB 
6LS "Modify component atom id" 2020-07-17 RCSB 
6LS "Modify leaving atom flag" 2020-07-17 RCSB 
6LS "Modify name"              2020-07-18 RCSB 
# 
