data_6OS
#

_chem_comp.id                                   6OS
_chem_comp.name                                 Neplanocin-A
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H13 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(1S,2R,5R)-5-(6-amino-9H-purin-9-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-05-16
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       263.253
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6OS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5JXW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6OS  C2     C1   C  0  1  Y  N  N  -26.038  -29.425  -1.732  -3.562  -1.079   1.416  C2     6OS   1  
6OS  C4     C2   C  0  1  Y  N  N  -26.403  -28.641  -3.894  -1.676  -0.298   0.360  C4     6OS   2  
6OS  C5     C3   C  0  1  Y  N  N  -25.463  -29.631  -4.422  -2.483   0.502  -0.466  C5     6OS   3  
6OS  C6     C4   C  0  1  Y  N  N  -24.822  -30.521  -3.439  -3.875   0.449  -0.285  C6     6OS   4  
6OS  "O3'"  O1   O  0  1  N  N  N  -29.097  -23.778  -5.857   3.870  -1.002  -1.321  "O3'"  6OS   5  
6OS  "C3'"  C5   C  0  1  N  N  R  -28.677  -25.098  -6.219   2.616  -0.388  -1.017  "C3'"  6OS   6  
6OS  "C2'"  C6   C  0  1  N  N  S  -27.410  -25.611  -5.510   1.597  -1.451  -0.541  "C2'"  6OS   7  
6OS  "O2'"  O2   O  0  1  N  N  N  -26.816  -24.681  -4.607   2.263  -2.583   0.021  "O2'"  6OS   8  
6OS  "C4'"  C7   C  0  1  N  N  N  -29.715  -26.146  -5.948   2.761   0.555   0.155  "C4'"  6OS   9  
6OS  "C5'"  C8   C  0  1  N  N  N  -31.151  -26.099  -6.445   3.888   1.542   0.319  "C5'"  6OS  10  
6OS  "O5'"  O3   O  0  1  N  N  N  -32.066  -26.447  -5.388   3.711   2.269   1.537  "O5'"  6OS  11  
6OS  "C6'"  C9   C  0  1  N  N  N  -29.240  -27.151  -5.227   1.783   0.403   1.005  "C6'"  6OS  12  
6OS  "C1'"  C10  C  0  1  N  N  R  -27.828  -26.873  -4.776   0.822  -0.668   0.543  "C1'"  6OS  13  
6OS  N9     N1   N  0  1  Y  N  N  -26.832  -27.951  -4.919  -0.382  -0.060  -0.029  N9     6OS  14  
6OS  N3     N2   N  0  1  Y  N  N  -26.655  -28.578  -2.570  -2.253  -1.066   1.279  N3     6OS  15  
6OS  N1     N3   N  0  1  Y  N  N  -25.161  -30.361  -2.140  -4.361  -0.349   0.660  N1     6OS  16  
6OS  C8     C11  C  0  1  Y  N  N  -26.267  -28.439  -6.045  -0.422   0.847  -1.047  C8     6OS  17  
6OS  N7     N4   N  0  1  Y  N  N  -25.420  -29.460  -5.753  -1.656   1.175  -1.301  N7     6OS  18  
6OS  N6     N5   N  0  1  N  N  N  -23.938  -31.465  -3.824  -4.721   1.214  -1.068  N6     6OS  19  
6OS  H1     H1   H  0  1  N  N  N  -26.256  -29.352  -0.677  -3.998  -1.715   2.173  H1     6OS  20  
6OS  H2     H2   H  0  1  N  N  N  -28.402  -23.160  -6.051   4.562  -0.377  -1.577  H2     6OS  21  
6OS  H3     H3   H  0  1  N  N  N  -28.469  -25.111  -7.299   2.233   0.144  -1.888  H3     6OS  22  
6OS  H4     H4   H  0  1  N  N  N  -26.678  -25.889  -6.283   0.937  -1.751  -1.355  H4     6OS  23  
6OS  H5     H5   H  0  1  N  N  N  -26.044  -25.070  -4.213   2.842  -3.047  -0.599  H5     6OS  24  
6OS  H6     H6   H  0  1  N  N  N  -31.378  -25.083  -6.799   4.838   1.008   0.349  H6     6OS  25  
6OS  H7     H7   H  0  1  N  N  N  -31.270  -26.811  -7.275   3.888   2.236  -0.521  H7     6OS  26  
6OS  H8     H8   H  0  1  N  N  N  -32.957  -26.413  -5.716   4.401   2.924   1.708  H8     6OS  27  
6OS  H9     H9   H  0  1  N  N  N  -29.791  -28.050  -4.993   1.675   0.967   1.920  H9     6OS  28  
6OS  H10    H10  H  0  1  N  N  N  -27.879  -26.616  -3.708   0.559  -1.325   1.372  H10    6OS  29  
6OS  H11    H11  H  0  1  N  N  N  -26.462  -28.068  -7.040   0.442   1.235  -1.565  H11    6OS  30  
6OS  H12    H12  H  0  1  N  N  N  -23.619  -31.971  -3.022  -4.354   1.796  -1.752  H12    6OS  31  
6OS  H13    H13  H  0  1  N  N  N  -24.381  -32.096  -4.461  -5.681   1.169  -0.933  H13    6OS  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6OS  "C5'"  "C4'"  SING  N  N   1  
6OS  "C5'"  "O5'"  SING  N  N   2  
6OS  "C3'"  "C4'"  SING  N  N   3  
6OS  "C3'"  "O3'"  SING  N  N   4  
6OS  "C3'"  "C2'"  SING  N  N   5  
6OS  C8     N7     DOUB  Y  N   6  
6OS  C8     N9     SING  Y  N   7  
6OS  "C4'"  "C6'"  DOUB  N  N   8  
6OS  N7     C5     SING  Y  N   9  
6OS  "C2'"  "C1'"  SING  N  N  10  
6OS  "C2'"  "O2'"  SING  N  N  11  
6OS  "C6'"  "C1'"  SING  N  N  12  
6OS  N9     "C1'"  SING  N  N  13  
6OS  N9     C4     SING  Y  N  14  
6OS  C5     C4     DOUB  Y  N  15  
6OS  C5     C6     SING  Y  N  16  
6OS  C4     N3     SING  Y  N  17  
6OS  N6     C6     SING  N  N  18  
6OS  C6     N1     DOUB  Y  N  19  
6OS  N3     C2     DOUB  Y  N  20  
6OS  N1     C2     SING  Y  N  21  
6OS  C2     H1     SING  N  N  22  
6OS  "O3'"  H2     SING  N  N  23  
6OS  "C3'"  H3     SING  N  N  24  
6OS  "C2'"  H4     SING  N  N  25  
6OS  "O2'"  H5     SING  N  N  26  
6OS  "C5'"  H6     SING  N  N  27  
6OS  "C5'"  H7     SING  N  N  28  
6OS  "O5'"  H8     SING  N  N  29  
6OS  "C6'"  H9     SING  N  N  30  
6OS  "C1'"  H10    SING  N  N  31  
6OS  C8     H11    SING  N  N  32  
6OS  N6     H12    SING  N  N  33  
6OS  N6     H13    SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6OS  SMILES            ACDLabs               12.01  "c1nc2c(c(n1)N)ncn2C3C(C(O)C(=C3)CO)O"  
6OS  InChI             InChI                 1.03   "InChI=1S/C11H13N5O3/c12-10-7-11(14-3-13-10)16(4-15-7)6-1-5(2-17)8(18)9(6)19/h1,3-4,6,8-9,17-19H,2H2,(H2,12,13,14)/t6-,8-,9+/m1/s1"  
6OS  InChIKey          InChI                 1.03   XUGWUUDOWNZAGW-VDAHYXPESA-N  
6OS  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3C=C(CO)[C@@H](O)[C@H]3O"  
6OS  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3C=C(CO)[CH](O)[CH]3O"  
6OS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "c1nc(c2c(n1)n(cn2)[C@@H]3C=C([C@H]([C@H]3O)O)CO)N"  
6OS  SMILES            "OpenEye OEToolkits"  2.0.4  "c1nc(c2c(n1)n(cn2)C3C=C(C(C3O)O)CO)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6OS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2R,5R)-5-(6-amino-9H-purin-9-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol"  
6OS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "(1~{S},2~{R},5~{R})-5-(6-aminopurin-9-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6OS  "Create component"  2016-05-16  RCSB  
6OS  "Initial release"   2016-05-25  RCSB  
6OS  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6OS
_pdbx_chem_comp_synonyms.name        "(1S,2R,5R)-5-(6-amino-9H-purin-9-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
