data_7LS
# 
_chem_comp.id                                    7LS 
_chem_comp.name                                  "2-[[1-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-2-oxidanylidene-pyrimidin-4-yl]amino]-10~{H}-acridin-9-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-11-16 
_chem_comp.pdbx_modified_date                    2017-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        466.443 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7LS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5MEM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7LS C1  C4A   C 0 1 Y N N 36.717 26.569 35.332 -4.660 1.143  -0.354 C1  7LS 1  
7LS C2  C5A   C 0 1 Y N N 37.660 27.712 37.165 -5.882 -0.934 -0.402 C2  7LS 2  
7LS C3  C8A   C 0 1 Y N N 38.910 27.747 36.548 -4.848 -1.619 0.260  C3  7LS 3  
7LS C4  C2    C 0 1 N N N 33.983 24.126 29.907 1.338  0.751  -0.058 C4  7LS 4  
7LS O1  O2    O 0 1 N N N 32.776 24.290 30.071 1.382  -0.433 -0.350 O1  7LS 5  
7LS C5  C1*   C 0 1 Y N N 38.033 25.978 33.398 -2.397 1.270  0.521  C5  7LS 6  
7LS C6  C9A   C 0 1 Y N N 37.948 26.570 34.666 -3.573 0.548  0.310  C6  7LS 7  
7LS C7  C9*   C 0 1 N N N 39.068 27.163 35.284 -3.700 -0.847 0.773  C7  7LS 8  
7LS O2  O9*   O 0 1 N N N 40.170 27.180 34.723 -2.894 -1.339 1.543  O2  7LS 9  
7LS C8  C8*   C 0 1 Y N N 39.977 28.361 37.214 -4.914 -3.003 0.421  C8  7LS 10 
7LS C9  C7*   C 0 1 Y N N 39.800 28.929 38.470 -5.986 -3.693 -0.071 C9  7LS 11 
7LS C10 C6*   C 0 1 Y N N 38.553 28.896 39.079 -7.010 -3.025 -0.729 C10 7LS 12 
7LS C11 C5*   C 0 1 Y N N 37.487 28.288 38.421 -6.965 -1.658 -0.897 C11 7LS 13 
7LS N1  N10   N 0 1 N N N 36.607 27.130 36.552 -5.828 0.435  -0.558 N1  7LS 14 
7LS C12 C4*   C 0 1 Y N N 35.602 25.976 34.733 -4.549 2.458  -0.799 C12 7LS 15 
7LS C13 C3*   C 0 1 Y N N 35.699 25.384 33.471 -3.385 3.163  -0.589 C13 7LS 16 
7LS C14 C2*   C 0 1 Y N N 36.923 25.381 32.785 -2.307 2.573  0.069  C14 7LS 17 
7LS N2  N4    N 0 1 N N N 37.145 24.843 31.561 -1.132 3.305  0.278  N2  7LS 18 
7LS C15 C4    C 0 1 N N N 36.202 24.422 30.690 0.088  2.666  0.268  C15 7LS 19 
7LS C16 C5    C 0 1 N N N 36.669 23.757 29.565 1.262  3.375  0.592  C16 7LS 20 
7LS C17 C6    C 0 1 N N N 35.771 23.277 28.627 2.448  2.721  0.580  C17 7LS 21 
7LS N3  N3    N 0 1 N N N 34.867 24.597 30.823 0.164  1.379  -0.046 N3  7LS 22 
7LS N4  N1    N 0 1 N N N 34.401 23.486 28.802 2.476  1.399  0.251  N4  7LS 23 
7LS C18 "C1'" C 0 1 N N R 33.416 22.951 27.825 3.752  0.679  0.235  C18 7LS 24 
7LS O3  "O5'" O 0 1 N N N 33.392 21.525 28.114 3.937  0.065  -1.042 O3  7LS 25 
7LS C19 "C5'" C 0 1 N N R 32.270 20.916 27.437 5.169  -0.645 -1.176 C19 7LS 26 
7LS C20 "C6'" C 0 1 N N N 32.152 19.461 27.876 5.270  -1.232 -2.585 C20 7LS 27 
7LS O4  "O6'" O 0 1 N N N 33.230 18.731 27.264 5.340  -0.171 -3.539 O4  7LS 28 
7LS C21 "C4'" C 0 1 N N S 32.426 21.067 25.905 5.218  -1.777 -0.146 C21 7LS 29 
7LS O5  "O4'" O 0 1 N N N 31.243 20.566 25.243 6.473  -2.454 -0.239 O5  7LS 30 
7LS C22 "C3'" C 0 1 N N S 32.650 22.534 25.514 5.056  -1.187 1.258  C22 7LS 31 
7LS O6  "O3'" O 0 1 N N N 33.015 22.610 24.134 5.027  -2.243 2.220  O6  7LS 32 
7LS C23 "C2'" C 0 1 N N R 33.765 23.153 26.369 3.744  -0.400 1.321  C23 7LS 33 
7LS O7  "O2'" O 0 1 N N N 33.904 24.553 26.103 3.617  0.216  2.605  O7  7LS 34 
7LS H1  H1    H 0 1 N N N 38.980 25.982 32.879 -1.564 0.813  1.034  H1  7LS 35 
7LS H2  H2    H 0 1 N N N 40.950 28.394 36.746 -4.120 -3.528 0.933  H2  7LS 36 
7LS H3  H3    H 0 1 N N N 40.634 29.397 38.973 -6.038 -4.765 0.052  H3  7LS 37 
7LS H4  H4    H 0 1 N N N 38.411 29.338 40.054 -7.851 -3.583 -1.114 H4  7LS 38 
7LS H5  H5    H 0 1 N N N 36.515 28.263 38.890 -7.767 -1.149 -1.411 H5  7LS 39 
7LS H6  H6    H 0 1 N N N 35.721 27.115 37.016 -6.631 0.913  -0.817 H6  7LS 40 
7LS H7  H7    H 0 1 N N N 34.655 25.975 35.252 -5.378 2.926  -1.310 H7  7LS 41 
7LS H8  H8    H 0 1 N N N 34.829 24.927 33.022 -3.307 4.182  -0.937 H8  7LS 42 
7LS H9  H9    H 0 1 N N N 38.099 24.749 31.275 -1.176 4.262  0.429  H9  7LS 43 
7LS H10 H10   H 0 1 N N N 37.730 23.614 29.422 1.217  4.423  0.850  H10 7LS 44 
7LS H11 H11   H 0 1 N N N 36.129 22.741 27.760 3.361  3.241  0.829  H11 7LS 45 
7LS H12 H12   H 0 1 N N N 32.427 23.390 28.023 4.567  1.379  0.423  H12 7LS 46 
7LS H13 H13   H 0 1 N N N 31.347 21.436 27.733 6.002  0.037  -1.006 H13 7LS 47 
7LS H14 H14   H 0 1 N N N 31.186 19.048 27.549 6.167  -1.848 -2.659 H14 7LS 48 
7LS H15 H15   H 0 1 N N N 32.228 19.393 28.971 4.391  -1.845 -2.787 H15 7LS 49 
7LS H16 H16   H 0 1 N N N 33.181 17.818 27.521 5.406  -0.471 -4.456 H16 7LS 50 
7LS H17 H17   H 0 1 N N N 33.303 20.484 25.588 4.409  -2.481 -0.340 H17 7LS 51 
7LS H18 H18   H 0 1 N N N 31.105 19.658 25.485 6.573  -3.185 0.386  H18 7LS 52 
7LS H19 H19   H 0 1 N N N 31.719 23.092 25.691 5.892  -0.520 1.472  H19 7LS 53 
7LS H20 H20   H 0 1 N N N 33.154 23.518 23.892 5.826  -2.788 2.231  H20 7LS 54 
7LS H21 H21   H 0 1 N N N 34.708 22.631 26.151 2.905  -1.076 1.156  H21 7LS 55 
7LS H22 H22   H 0 1 N N N 34.599 24.911 26.643 3.610  -0.410 3.342  H22 7LS 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7LS O6  C22 SING N N 1  
7LS O5  C21 SING N N 2  
7LS C22 C21 SING N N 3  
7LS C22 C23 SING N N 4  
7LS C21 C19 SING N N 5  
7LS O7  C23 SING N N 6  
7LS C23 C18 SING N N 7  
7LS O4  C20 SING N N 8  
7LS C19 C20 SING N N 9  
7LS C19 O3  SING N N 10 
7LS C18 O3  SING N N 11 
7LS C18 N4  SING N N 12 
7LS C17 N4  SING N N 13 
7LS C17 C16 DOUB N N 14 
7LS N4  C4  SING N N 15 
7LS C16 C15 SING N N 16 
7LS C4  O1  DOUB N N 17 
7LS C4  N3  SING N N 18 
7LS C15 N3  DOUB N N 19 
7LS C15 N2  SING N N 20 
7LS N2  C14 SING N N 21 
7LS C14 C5  DOUB Y N 22 
7LS C14 C13 SING Y N 23 
7LS C5  C6  SING Y N 24 
7LS C13 C12 DOUB Y N 25 
7LS C6  C7  SING N N 26 
7LS C6  C1  DOUB Y N 27 
7LS O2  C7  DOUB N N 28 
7LS C12 C1  SING Y N 29 
7LS C7  C3  SING N N 30 
7LS C1  N1  SING N N 31 
7LS C3  C2  DOUB Y N 32 
7LS C3  C8  SING Y N 33 
7LS N1  C2  SING N N 34 
7LS C2  C11 SING Y N 35 
7LS C8  C9  DOUB Y N 36 
7LS C11 C10 DOUB Y N 37 
7LS C9  C10 SING Y N 38 
7LS C5  H1  SING N N 39 
7LS C8  H2  SING N N 40 
7LS C9  H3  SING N N 41 
7LS C10 H4  SING N N 42 
7LS C11 H5  SING N N 43 
7LS N1  H6  SING N N 44 
7LS C12 H7  SING N N 45 
7LS C13 H8  SING N N 46 
7LS N2  H9  SING N N 47 
7LS C16 H10 SING N N 48 
7LS C17 H11 SING N N 49 
7LS C18 H12 SING N N 50 
7LS C19 H13 SING N N 51 
7LS C20 H14 SING N N 52 
7LS C20 H15 SING N N 53 
7LS O4  H16 SING N N 54 
7LS C21 H17 SING N N 55 
7LS O5  H18 SING N N 56 
7LS C22 H19 SING N N 57 
7LS O6  H20 SING N N 58 
7LS C23 H21 SING N N 59 
7LS O7  H22 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7LS InChI            InChI                1.03  
"InChI=1S/C23H22N4O7/c28-10-16-19(30)20(31)21(32)22(34-16)27-8-7-17(26-23(27)33)24-11-5-6-15-13(9-11)18(29)12-3-1-2-4-14(12)25-15/h1-9,16,19-22,28,30-32H,10H2,(H,25,29)(H,24,26,33)/t16-,19-,20+,21-,22-/m1/s1" 
7LS InChIKey         InChI                1.03  GFASNZAXNSUSSV-RECXWPGBSA-N 
7LS SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)N2C=CC(=NC2=O)Nc3ccc4Nc5ccccc5C(=O)c4c3" 
7LS SMILES           CACTVS               3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)N2C=CC(=NC2=O)Nc3ccc4Nc5ccccc5C(=O)c4c3" 
7LS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)C(=O)c3cc(ccc3N2)NC4=NC(=O)N(C=C4)[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O" 
7LS SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)C(=O)c3cc(ccc3N2)NC4=NC(=O)N(C=C4)C5C(C(C(C(O5)CO)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7LS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[[1-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-2-oxidanylidene-pyrimidin-4-yl]amino]-10~{H}-acridin-9-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7LS "Create component" 2016-11-16 EBI  
7LS "Initial release"  2017-11-29 RCSB 
# 
