data_8OS
# 
_chem_comp.id                                    8OS 
_chem_comp.name                                  "5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine" 
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C14 H18 N7 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               G 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-22 
_chem_comp.pdbx_modified_date                    2017-03-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        427.309 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8OS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5UX3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8OS O1  O6  O 0 1 N N N 60.312 38.243 183.313 6.019  -2.794 -1.178 O1  8OS 1  
8OS C1  C6  C 0 1 N N N 61.366 38.125 182.712 5.548  -1.910 -0.483 C1  8OS 2  
8OS N1  N1  N 0 1 N N N 62.404 37.388 183.271 6.269  -1.356 0.517  N1  8OS 3  
8OS C2  C2  C 0 1 N N N 63.572 37.266 182.535 5.731  -0.368 1.287  C2  8OS 4  
8OS N2  N2  N 0 1 N N N 64.568 36.578 183.009 6.487  0.176  2.295  N2  8OS 5  
8OS N3  N3  N 0 1 N N N 63.684 37.866 181.344 4.511  0.079  1.092  N3  8OS 6  
8OS C3  C4  C 0 1 Y N N 62.654 38.575 180.843 3.738  -0.421 0.121  C3  8OS 7  
8OS C4  C5  C 0 1 Y N N 61.511 38.693 181.516 4.234  -1.434 -0.708 C4  8OS 8  
8OS N4  N7  N 0 1 Y N N 60.679 39.436 180.809 3.255  -1.748 -1.590 N4  8OS 9  
8OS C5  C8  C 0 1 Y N N 61.307 39.777 179.697 2.212  -1.006 -1.359 C5  8OS 10 
8OS N5  N9  N 0 1 Y N N 62.520 39.238 179.708 2.465  -0.167 -0.312 N5  8OS 11 
8OS C6  C1* C 0 1 N N R 63.544 39.374 178.668 1.540  0.821  0.249  C6  8OS 12 
8OS O2  O4* O 0 1 N N N 62.885 39.976 177.563 0.176  0.474  -0.075 O2  8OS 13 
8OS C7  C2* C 0 1 N N R 64.123 38.064 178.173 1.765  2.202  -0.405 C7  8OS 14 
8OS O3  O2* O 0 1 N N N 65.500 38.200 177.752 2.584  3.024  0.430  O3  8OS 15 
8OS C8  C3* C 0 1 N N S 63.232 37.789 177.040 0.344  2.795  -0.528 C8  8OS 16 
8OS O4  O3* O 0 1 N N N 63.896 37.022 176.022 0.240  4.005  0.225  O4  8OS 17 
8OS C9  C4* C 0 1 N N R 62.982 39.086 176.458 -0.573 1.701  0.068  C9  8OS 18 
8OS C10 C5* C 0 1 N N N 61.664 39.074 175.707 -1.884 1.620  -0.716 C10 8OS 19 
8OS O5  O5* O 0 1 N N N 60.546 38.864 176.567 -2.761 0.687  -0.081 O5  8OS 20 
8OS P1  P6* P 0 1 N N N 59.082 39.274 176.025 -4.234 0.351  -0.637 P1  8OS 21 
8OS O6  O7* O 0 1 N N N 58.228 38.544 177.079 -4.115 -0.365 -2.075 O6  8OS 22 
8OS O7  O8* O 0 1 N N N 58.797 38.703 174.650 -5.009 1.604  -0.773 O7  8OS 23 
8OS C11 C10 C 0 1 Y N N 58.814 40.942 176.292 -5.079 -0.760 0.522  C11 8OS 24 
8OS N6  N11 N 0 1 Y N N 58.943 41.570 177.467 -5.862 -0.390 1.583  N6  8OS 25 
8OS C12 C12 C 0 1 Y N N 58.634 42.855 177.258 -6.291 -1.524 2.177  C12 8OS 26 
8OS N7  N13 N 0 1 Y N N 58.308 43.003 175.961 -5.806 -2.547 1.527  N7  8OS 27 
8OS C13 C14 C 0 1 Y N N 58.412 41.807 175.357 -5.062 -2.106 0.502  C13 8OS 28 
8OS C14 C15 C 0 1 N N N 58.130 41.506 173.844 -4.326 -2.967 -0.493 C14 8OS 29 
8OS H1  H1  H 0 1 N N N 62.311 36.962 184.171 7.173  -1.663 0.687  H1  8OS 30 
8OS H2  H2  H 0 1 N N N 65.415 36.498 182.484 7.389  -0.143 2.451  H2  8OS 31 
8OS H3  H3  H 0 1 N N N 64.487 36.129 183.899 6.118  0.880  2.852  H3  8OS 32 
8OS H4  H4  H 0 1 N N N 60.900 40.393 178.909 1.287  -1.043 -1.915 H4  8OS 33 
8OS H5  H5  H 0 1 N N N 64.360 40.017 179.028 1.668  0.888  1.330  H5  8OS 34 
8OS H6  H6  H 0 1 N N N 64.020 37.289 178.947 2.219  2.089  -1.390 H6  8OS 35 
8OS H7  H7  H 0 1 N N N 66.047 38.377 178.508 2.757  3.904  0.067  H7  8OS 36 
8OS H8  H8  H 0 1 N N N 62.301 37.307 177.372 0.095  2.975  -1.574 H8  8OS 37 
8OS H9  H9  H 0 1 N N N 64.086 36.152 176.354 0.838  4.705  -0.070 H9  8OS 38 
8OS H10 H10 H 0 1 N N N 63.797 39.378 175.780 -0.771 1.904  1.120  H10 8OS 39 
8OS H11 H11 H 0 1 N N N 61.540 40.041 175.197 -2.354 2.602  -0.740 H11 8OS 40 
8OS H12 H12 H 0 1 N N N 61.691 38.267 174.960 -1.679 1.289  -1.734 H12 8OS 41 
8OS H13 H13 H 0 1 N N N 57.695 37.883 176.653 -3.618 -1.194 -2.061 H13 8OS 42 
8OS H14 H14 H 0 1 N N N 59.218 41.157 178.335 -6.069 0.517  1.856  H14 8OS 43 
8OS H15 H15 H 0 1 N N N 58.644 43.638 178.002 -6.930 -1.577 3.046  H15 8OS 44 
8OS H17 H17 H 0 1 N N N 57.828 42.433 173.335 -4.979 -3.183 -1.339 H17 8OS 45 
8OS H18 H18 H 0 1 N N N 59.042 41.110 173.373 -3.439 -2.440 -0.844 H18 8OS 46 
8OS H19 H19 H 0 1 N N N 57.323 40.764 173.762 -4.029 -3.901 -0.015 H19 8OS 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8OS C14 C13 SING N N 1  
8OS O7  P1  DOUB N N 2  
8OS C13 N7  SING Y N 3  
8OS C13 C11 DOUB Y N 4  
8OS C10 C9  SING N N 5  
8OS C10 O5  SING N N 6  
8OS N7  C12 DOUB Y N 7  
8OS O4  C8  SING N N 8  
8OS P1  C11 SING N N 9  
8OS P1  O5  SING N N 10 
8OS P1  O6  SING N N 11 
8OS C11 N6  SING Y N 12 
8OS C9  C8  SING N N 13 
8OS C9  O2  SING N N 14 
8OS C8  C7  SING N N 15 
8OS C12 N6  SING Y N 16 
8OS O2  C6  SING N N 17 
8OS O3  C7  SING N N 18 
8OS C7  C6  SING N N 19 
8OS C6  N5  SING N N 20 
8OS C5  N5  SING Y N 21 
8OS C5  N4  DOUB Y N 22 
8OS N5  C3  SING Y N 23 
8OS N4  C4  SING Y N 24 
8OS C3  N3  SING N N 25 
8OS C3  C4  DOUB Y N 26 
8OS N3  C2  DOUB N N 27 
8OS C4  C1  SING N N 28 
8OS C2  N2  SING N N 29 
8OS C2  N1  SING N N 30 
8OS C1  N1  SING N N 31 
8OS C1  O1  DOUB N N 32 
8OS N1  H1  SING N N 33 
8OS N2  H2  SING N N 34 
8OS N2  H3  SING N N 35 
8OS C5  H4  SING N N 36 
8OS C6  H5  SING N N 37 
8OS C7  H6  SING N N 38 
8OS O3  H7  SING N N 39 
8OS C8  H8  SING N N 40 
8OS O4  H9  SING N N 41 
8OS C9  H10 SING N N 42 
8OS C10 H11 SING N N 43 
8OS C10 H12 SING N N 44 
8OS O6  H13 SING N N 45 
8OS N6  H14 SING N N 46 
8OS C12 H15 SING N N 47 
8OS C14 H17 SING N N 48 
8OS C14 H18 SING N N 49 
8OS C14 H19 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8OS SMILES           ACDLabs              12.01 "O=C1NC(N)=Nc2c1ncn2C3OC(C(C3O)O)COP(c4ncnc4C)(O)=O"                                                                                                                                               
8OS InChI            InChI                1.03  "InChI=1S/C14H18N7O7P/c1-5-12(17-3-16-5)29(25,26)27-2-6-8(22)9(23)13(28-6)21-4-18-7-10(21)19-14(15)20-11(7)24/h3-4,6,8-9,13,22-23H,2H2,1H3,(H,16,17)(H,25,26)(H3,15,19,20,24)/t6-,8-,9-,13-/m1/s1" 
8OS InChIKey         InChI                1.03  MUFMHNGPMISZRD-HTVVRFAVSA-N                                                                                                                                                                        
8OS SMILES_CANONICAL CACTVS               3.385 "Cc1nc[nH]c1[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N"                                                                                                                       
8OS SMILES           CACTVS               3.385 "Cc1nc[nH]c1[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N"                                                                                                                            
8OS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c([nH]cn1)P(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O"                                                                                                                      
8OS SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c([nH]cn1)P(=O)(O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8OS "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine"                                                                                            
8OS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(4-methyl-1~{H}-imidazol-5-yl)phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8OS "Create component" 2017-02-22 RCSB 
8OS "Initial release"  2017-03-08 RCSB 
# 
