data_9GS
# 
_chem_comp.id                                    9GS 
_chem_comp.name                                  "5'-(4-cyclopropyl-6-methoxypyrimidin-5-yl)-N-{[4-(ethylsulfonyl)phenyl]methyl}spiro[cyclopentane-1,3'-pyrrolo[3,2-b]pyridine]-1'(2'H)-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H33 N5 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-10 
_chem_comp.pdbx_modified_date                    2018-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        547.668 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9GS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VQL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9GS C6  C1  C 0 1 Y N N 1.289   25.221 14.027 6.874  0.570  0.248  C6  9GS 1  
9GS C7  C2  C 0 1 Y N N 1.243   24.898 12.665 6.299  1.241  -0.815 C7  9GS 2  
9GS C8  C3  C 0 1 Y N N 0.241   25.410 11.836 5.027  1.767  -0.694 C8  9GS 3  
9GS C10 C4  C 0 1 N N N -1.837  26.833 11.477 2.942  2.196  0.622  C10 9GS 4  
9GS C15 C5  C 0 1 N N N -5.573  27.504 13.617 0.048  -0.820 -0.515 C15 9GS 5  
9GS C17 C6  C 0 1 N N N -6.424  27.778 15.978 -1.513 -1.986 -2.130 C17 9GS 6  
9GS C20 C7  C 0 1 N N N -7.983  28.046 14.110 -1.424 -2.754 0.188  C20 9GS 7  
9GS C21 C8  C 0 1 Y N N -6.992  25.806 14.549 -2.333 -0.464 -0.307 C21 9GS 8  
9GS C24 C9  C 0 1 Y N N -7.055  23.072 14.287 -3.773 1.721  0.480  C24 9GS 9  
9GS C26 C10 C 0 1 Y N N -6.059  25.214 13.687 -1.654 0.693  0.056  C26 9GS 10 
9GS C28 C11 C 0 1 Y N N -8.532  22.533 17.172 -6.668 1.396  -0.479 C28 9GS 11 
9GS O13 O1  O 0 1 N N N -3.630  24.777 12.226 0.277  2.612  0.527  O13 9GS 12 
9GS C12 C12 C 0 1 N N N -3.951  25.920 12.529 0.642  1.488  0.238  C12 9GS 13 
9GS N11 N1  N 0 1 N N N -3.126  26.965 12.197 1.957  1.195  0.204  N11 9GS 14 
9GS C9  C13 C 0 1 Y N N -0.744  26.251 12.358 4.329  1.622  0.490  C9  9GS 15 
9GS C38 C14 C 0 1 Y N N -0.696  26.566 13.711 4.903  0.950  1.553  C38 9GS 16 
9GS C39 C15 C 0 1 Y N N 0.290   26.042 14.540 6.176  0.425  1.432  C39 9GS 17 
9GS S3  S1  S 0 1 N N N 2.530   24.552 15.118 8.493  -0.106 0.091  S3  9GS 18 
9GS O4  O2  O 0 1 N N N 2.559   25.404 16.261 9.117  0.702  -0.897 O4  9GS 19 
9GS O5  O3  O 0 1 N N N 3.706   24.405 14.326 8.987  -0.146 1.423  O5  9GS 20 
9GS C2  C16 C 0 1 N N N 1.924   22.899 15.572 8.223  -1.786 -0.538 C2  9GS 21 
9GS C1  C17 C 0 1 N N N 0.423   22.872 15.870 9.572  -2.486 -0.718 C1  9GS 22 
9GS N14 N2  N 0 1 N N N -5.137  26.164 13.180 -0.268 0.536  -0.048 N14 9GS 23 
9GS C16 C18 C 0 1 N N N -6.748  27.284 14.565 -1.310 -1.497 -0.692 C16 9GS 24 
9GS C19 C19 C 0 1 N N N -8.686  28.592 15.376 -0.749 -3.843 -0.686 C19 9GS 25 
9GS C18 C20 C 0 1 N N N -7.784  28.220 16.583 -1.167 -3.488 -2.129 C18 9GS 26 
9GS C25 C21 C 0 1 Y N N -6.085  23.799 13.600 -2.396 1.809  0.459  C25 9GS 27 
9GS C23 C22 C 0 1 Y N N -7.977  23.764 15.084 -4.383 0.526  0.103  C23 9GS 28 
9GS N22 N3  N 0 1 Y N N -7.901  25.085 15.194 -3.651 -0.513 -0.273 N22 9GS 29 
9GS C27 C23 C 0 1 Y N N -8.966  23.037 15.917 -5.861 0.415  0.123  C27 9GS 30 
9GS C34 C24 C 0 1 Y N N -10.320 22.846 15.566 -6.491 -0.664 0.740  C34 9GS 31 
9GS C35 C25 C 0 1 N N N -10.890 23.352 14.268 -5.679 -1.747 1.403  C35 9GS 32 
9GS C37 C26 C 0 1 N N N -11.467 24.766 14.332 -5.919 -3.188 0.950  C37 9GS 33 
9GS C36 C27 C 0 1 N N N -12.401 23.565 14.160 -6.418 -2.724 2.320  C36 9GS 34 
9GS N33 N4  N 0 1 Y N N -11.124 22.205 16.415 -7.813 -0.724 0.736  N33 9GS 35 
9GS C32 C28 C 0 1 Y N N -10.680 21.743 17.572 -8.536 0.216  0.160  C32 9GS 36 
9GS N31 N5  N 0 1 Y N N -9.424  21.906 17.949 -7.986 1.258  -0.431 N31 9GS 37 
9GS O29 O4  O 0 1 N N N -7.244  22.726 17.584 -6.108 2.467  -1.093 O29 9GS 38 
9GS C30 C29 C 0 1 N N N -6.631  21.853 18.546 -7.000 3.420  -1.674 C30 9GS 39 
9GS H1  H1  H 0 1 N N N 1.994   24.243 12.249 6.845  1.354  -1.741 H1  9GS 40 
9GS H2  H2  H 0 1 N N N 0.228   25.154 10.787 4.578  2.292  -1.525 H2  9GS 41 
9GS H3  H3  H 0 1 N N N -1.982  26.172 10.609 2.852  3.080  -0.010 H3  9GS 42 
9GS H4  H4  H 0 1 N N N -1.521  27.828 11.131 2.760  2.473  1.661  H4  9GS 43 
9GS H5  H5  H 0 1 N N N -4.754  28.020 14.139 0.579  -0.779 -1.466 H5  9GS 44 
9GS H6  H6  H 0 1 N N N -5.890  28.103 12.750 0.642  -1.350 0.229  H6  9GS 45 
9GS H7  H7  H 0 1 N N N -5.982  26.968 16.577 -2.550 -1.840 -2.432 H7  9GS 46 
9GS H8  H8  H 0 1 N N N -5.726  28.628 15.938 -0.847 -1.449 -2.805 H8  9GS 47 
9GS H9  H9  H 0 1 N N N -7.690  28.879 13.454 -0.884 -2.620 1.125  H9  9GS 48 
9GS H10 H10 H 0 1 N N N -8.661  27.372 13.565 -2.469 -3.000 0.375  H10 9GS 49 
9GS H11 H11 H 0 1 N N N -7.096  21.996 14.207 -4.371 2.567  0.787  H11 9GS 50 
9GS H12 H12 H 0 1 N N N -3.416  27.885 12.461 2.252  0.322  -0.097 H12 9GS 51 
9GS H13 H13 H 0 1 N N N -1.439  27.231 14.127 4.357  0.837  2.478  H13 9GS 52 
9GS H14 H14 H 0 1 N N N 0.280   26.275 15.594 6.623  -0.103 2.261  H14 9GS 53 
9GS H15 H15 H 0 1 N N N 2.128   22.210 14.739 7.615  -2.347 0.172  H15 9GS 54 
9GS H16 H16 H 0 1 N N N 2.465   22.561 16.468 7.709  -1.736 -1.497 H16 9GS 55 
9GS H17 H17 H 0 1 N N N 0.120   21.849 16.137 10.180 -1.926 -1.428 H17 9GS 56 
9GS H18 H18 H 0 1 N N N 0.203   23.550 16.708 10.087 -2.536 0.241  H18 9GS 57 
9GS H19 H19 H 0 1 N N N -0.134  23.198 14.979 9.410  -3.496 -1.096 H19 9GS 58 
9GS H20 H20 H 0 1 N N N -8.796  29.684 15.307 0.335  -3.798 -0.581 H20 9GS 59 
9GS H21 H21 H 0 1 N N N -9.678  28.130 15.488 -1.119 -4.832 -0.414 H21 9GS 60 
9GS H22 H22 H 0 1 N N N -7.645  29.091 17.240 -2.041 -4.072 -2.419 H22 9GS 61 
9GS H23 H23 H 0 1 N N N -8.233  27.396 17.157 -0.343 -3.682 -2.815 H23 9GS 62 
9GS H24 H24 H 0 1 N N N -5.351  23.283 12.999 -1.899 2.724  0.747  H24 9GS 63 
9GS H25 H25 H 0 1 N N N -10.362 23.074 13.344 -4.661 -1.469 1.679  H25 9GS 64 
9GS H26 H26 H 0 1 N N N -11.308 25.463 13.496 -6.665 -3.353 0.172  H26 9GS 65 
9GS H27 H27 H 0 1 N N N -11.455 25.322 15.281 -5.060 -3.859 0.928  H27 9GS 66 
9GS H28 H28 H 0 1 N N N -12.913 23.399 13.201 -5.887 -3.089 3.199  H28 9GS 67 
9GS H29 H29 H 0 1 N N N -13.060 23.258 14.985 -7.492 -2.583 2.444  H29 9GS 68 
9GS H30 H30 H 0 1 N N N -11.362 21.219 18.226 -9.612 0.132  0.177  H30 9GS 69 
9GS H31 H31 H 0 1 N N N -5.599  22.183 18.737 -7.609 2.932  -2.435 H31 9GS 70 
9GS H32 H32 H 0 1 N N N -7.204  21.881 19.484 -7.647 3.832  -0.900 H32 9GS 71 
9GS H33 H33 H 0 1 N N N -6.620  20.825 18.154 -6.424 4.225  -2.131 H33 9GS 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9GS C10 N11 SING N N 1  
9GS C10 C9  SING N N 2  
9GS C8  C9  DOUB Y N 3  
9GS C8  C7  SING Y N 4  
9GS N11 C12 SING N N 5  
9GS O13 C12 DOUB N N 6  
9GS C9  C38 SING Y N 7  
9GS C12 N14 SING N N 8  
9GS C7  C6  DOUB Y N 9  
9GS N14 C15 SING N N 10 
9GS N14 C26 SING N N 11 
9GS C25 C26 DOUB Y N 12 
9GS C25 C24 SING Y N 13 
9GS C15 C16 SING N N 14 
9GS C26 C21 SING Y N 15 
9GS C38 C39 DOUB Y N 16 
9GS C6  C39 SING Y N 17 
9GS C6  S3  SING N N 18 
9GS C20 C16 SING N N 19 
9GS C20 C19 SING N N 20 
9GS C36 C35 SING N N 21 
9GS C36 C37 SING N N 22 
9GS C35 C37 SING N N 23 
9GS C35 C34 SING N N 24 
9GS C24 C23 DOUB Y N 25 
9GS O5  S3  DOUB N N 26 
9GS C21 C16 SING N N 27 
9GS C21 N22 DOUB Y N 28 
9GS C16 C17 SING N N 29 
9GS C23 N22 SING Y N 30 
9GS C23 C27 SING N N 31 
9GS S3  C2  SING N N 32 
9GS S3  O4  DOUB N N 33 
9GS C19 C18 SING N N 34 
9GS C34 C27 DOUB Y N 35 
9GS C34 N33 SING Y N 36 
9GS C2  C1  SING N N 37 
9GS C27 C28 SING Y N 38 
9GS C17 C18 SING N N 39 
9GS N33 C32 DOUB Y N 40 
9GS C28 O29 SING N N 41 
9GS C28 N31 DOUB Y N 42 
9GS C32 N31 SING Y N 43 
9GS O29 C30 SING N N 44 
9GS C7  H1  SING N N 45 
9GS C8  H2  SING N N 46 
9GS C10 H3  SING N N 47 
9GS C10 H4  SING N N 48 
9GS C15 H5  SING N N 49 
9GS C15 H6  SING N N 50 
9GS C17 H7  SING N N 51 
9GS C17 H8  SING N N 52 
9GS C20 H9  SING N N 53 
9GS C20 H10 SING N N 54 
9GS C24 H11 SING N N 55 
9GS N11 H12 SING N N 56 
9GS C38 H13 SING N N 57 
9GS C39 H14 SING N N 58 
9GS C2  H15 SING N N 59 
9GS C2  H16 SING N N 60 
9GS C1  H17 SING N N 61 
9GS C1  H18 SING N N 62 
9GS C1  H19 SING N N 63 
9GS C19 H20 SING N N 64 
9GS C19 H21 SING N N 65 
9GS C18 H22 SING N N 66 
9GS C18 H23 SING N N 67 
9GS C25 H24 SING N N 68 
9GS C35 H25 SING N N 69 
9GS C37 H26 SING N N 70 
9GS C37 H27 SING N N 71 
9GS C36 H28 SING N N 72 
9GS C36 H29 SING N N 73 
9GS C32 H30 SING N N 74 
9GS C30 H31 SING N N 75 
9GS C30 H32 SING N N 76 
9GS C30 H33 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9GS SMILES           ACDLabs              12.01 "c1(ccc(cc1)CNC(=O)N4CC2(CCCC2)c3nc(ccc34)c5c(OC)ncnc5C6CC6)S(CC)(=O)=O"                                                                                                                                
9GS InChI            InChI                1.03  "InChI=1S/C29H33N5O4S/c1-3-39(36,37)21-10-6-19(7-11-21)16-30-28(35)34-17-29(14-4-5-15-29)26-23(34)13-12-22(33-26)24-25(20-8-9-20)31-18-32-27(24)38-2/h6-7,10-13,18,20H,3-5,8-9,14-17H2,1-2H3,(H,30,35)" 
9GS InChIKey         InChI                1.03  PWIXSNKHPMGRRW-UHFFFAOYSA-N                                                                                                                                                                             
9GS SMILES_CANONICAL CACTVS               3.385 "CC[S](=O)(=O)c1ccc(CNC(=O)N2CC3(CCCC3)c4nc(ccc24)c5c(OC)ncnc5C6CC6)cc1"                                                                                                                                
9GS SMILES           CACTVS               3.385 "CC[S](=O)(=O)c1ccc(CNC(=O)N2CC3(CCCC3)c4nc(ccc24)c5c(OC)ncnc5C6CC6)cc1"                                                                                                                                
9GS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCS(=O)(=O)c1ccc(cc1)CNC(=O)N2CC3(CCCC3)c4c2ccc(n4)c5c(ncnc5OC)C6CC6"                                                                                                                                  
9GS SMILES           "OpenEye OEToolkits" 2.0.6 "CCS(=O)(=O)c1ccc(cc1)CNC(=O)N2CC3(CCCC3)c4c2ccc(n4)c5c(ncnc5OC)C6CC6"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9GS "SYSTEMATIC NAME" ACDLabs              12.01 "5'-(4-cyclopropyl-6-methoxypyrimidin-5-yl)-N-{[4-(ethylsulfonyl)phenyl]methyl}spiro[cyclopentane-1,3'-pyrrolo[3,2-b]pyridine]-1'(2'H)-carboxamide"  
9GS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-(4-cyclopropyl-6-methoxy-pyrimidin-5-yl)-~{N}-[(4-ethylsulfonylphenyl)methyl]spiro[2~{H}-pyrrolo[3,2-b]pyridine-3,1'-cyclopentane]-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9GS "Create component" 2017-05-10 RCSB 
9GS "Initial release"  2018-05-16 RCSB 
# 
