data_9LS
# 
_chem_comp.id                                    9LS 
_chem_comp.name                                  "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-(2-fluorophenyl)acetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H23 Cl F3 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        497.939 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9LS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q0V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9LS N1   N1  N  0 1 Y N N 22.976 18.013 3.714 1.139  0.749  -0.204 N1   9LS 1  
9LS N3   N2  N  0 1 Y N N 22.732 16.415 2.153 1.537  2.815  0.412  N3   9LS 2  
9LS C4   C1  C  0 1 Y N N 24.223 17.426 3.571 2.462  0.806  0.192  C4   9LS 3  
9LS C5   C2  C  0 1 Y N N 24.061 16.435 2.604 2.698  2.136  0.583  C5   9LS 4  
9LS C6   C3  C  0 1 N N N 23.314 20.431 4.197 -0.663 -0.804 0.274  C6   9LS 5  
9LS C7   C4  C  0 1 N N S 22.585 19.140 4.627 0.429  -0.434 -0.696 C7   9LS 6  
9LS C8   C5  C  0 1 Y N N 25.431 17.679 4.207 3.485  -0.129 0.262  C8   9LS 7  
9LS C10  C6  C  0 1 Y N N 25.165 15.650 2.239 3.968  2.506  1.036  C10  9LS 8  
9LS C13  C7  C  0 1 Y N N 26.367 15.912 2.877 4.972  1.565  1.100  C13  9LS 9  
9LS C17  C8  C  0 1 N N N 22.722 18.784 6.125 1.410  -1.600 -0.829 C17  9LS 10 
9LS C22  C9  C  0 1 Y N N 18.053 18.512 2.377 -3.390 3.109  -0.933 C22  9LS 11 
9LS C24  C10 C  0 1 Y N N 18.363 17.502 3.274 -2.621 3.910  -0.104 C24  9LS 12 
9LS C28  C11 C  0 1 Y N N 26.027 22.510 1.028 -4.429 -3.468 1.492  C28  9LS 13 
9LS F23  F1  F  0 1 N N N 26.074 20.352 2.006 -3.085 -4.043 -0.371 F23  9LS 14 
9LS C16  C12 C  0 1 Y N N 25.387 21.505 1.722 -3.380 -3.191 0.635  C16  9LS 15 
9LS C32  C13 C  0 1 Y N N 25.316 23.670 0.750 -4.735 -2.593 2.518  C32  9LS 16 
9LS C31  C14 C  0 1 Y N N 24.001 23.803 1.162 -3.993 -1.440 2.691  C31  9LS 17 
9LS C27  C15 C  0 1 Y N N 23.373 22.779 1.863 -2.943 -1.156 1.839  C27  9LS 18 
9LS C14  C16 C  0 1 Y N N 24.072 21.601 2.153 -2.629 -2.034 0.811  C14  9LS 19 
9LS N9   N3  N  0 1 N N N 23.461 20.545 2.859 -1.565 -1.750 -0.055 N9   9LS 20 
9LS O15  O1  O  0 1 N N N 23.714 21.257 5.013 -0.730 -0.251 1.352  O15  9LS 21 
9LS C29  C17 C  0 1 N N N 21.933 19.763 7.013 0.642  -2.876 -1.178 C29  9LS 22 
9LS C33  C18 C  0 1 N N N 22.016 19.392 8.506 1.624  -4.042 -1.311 C33  9LS 23 
9LS C35  C19 C  0 1 N N N 21.538 17.963 8.751 2.634  -3.735 -2.418 C35  9LS 24 
9LS C34  C20 C  0 1 N N N 22.325 16.964 7.886 3.402  -2.459 -2.069 C34  9LS 25 
9LS C30  C21 C  0 1 N N N 22.245 17.341 6.395 2.420  -1.293 -1.936 C30  9LS 26 
9LS C2   C22 C  0 1 Y N N 22.126 17.370 2.844 0.615  2.004  -0.046 C2   9LS 27 
9LS F21  F2  F  0 1 N N N 27.449 15.191 2.561 6.200  1.923  1.538  F21  9LS 28 
9LS C11  C23 C  0 1 Y N N 26.490 16.904 3.836 4.733  0.250  0.715  C11  9LS 29 
9LS F20  F3  F  0 1 N N N 27.691 17.114 4.418 5.728  -0.662 0.783  F20  9LS 30 
9LS C12  C24 C  0 1 Y N N 20.702 17.734 2.698 -0.779 2.389  -0.354 C12  9LS 31 
9LS C18  C25 C  0 1 Y N N 20.357 18.754 1.808 -1.559 1.587  -1.189 C18  9LS 32 
9LS C25  C26 C  0 1 Y N N 19.033 19.143 1.643 -2.858 1.951  -1.474 C25  9LS 33 
9LS CL26 CL1 CL 0 0 N N N 16.391 18.997 2.175 -5.029 3.558  -1.289 CL26 9LS 34 
9LS C19  C27 C  0 1 Y N N 19.690 17.119 3.434 -1.320 3.556  0.187  C19  9LS 35 
9LS H1   H1  H  0 1 N N N 21.514 19.324 4.455 -0.010 -0.215 -1.670 H1   9LS 36 
9LS H2   H2  H  0 1 N N N 25.527 18.450 4.957 3.306  -1.151 -0.038 H2   9LS 37 
9LS H3   H3  H  0 1 N N N 25.082 14.874 1.492 4.161  3.526  1.334  H3   9LS 38 
9LS H4   H4  H  0 1 N N N 23.785 18.851 6.398 1.938  -1.740 0.115  H4   9LS 39 
9LS H5   H5  H  0 1 N N N 17.583 17.018 3.842 -3.041 4.812  0.315  H5   9LS 40 
9LS H6   H6  H  0 1 N N N 27.053 22.398 0.709 -5.014 -4.367 1.357  H6   9LS 41 
9LS H7   H7  H  0 1 N N N 25.792 24.474 0.209 -5.555 -2.812 3.186  H7   9LS 42 
9LS H8   H8  H  0 1 N N N 23.458 24.709 0.937 -4.234 -0.758 3.494  H8   9LS 43 
9LS H9   H9  H  0 1 N N N 22.348 22.892 2.183 -2.364 -0.255 1.975  H9   9LS 44 
9LS H10  H10 H  0 1 N N N 23.095 19.796 2.307 -1.477 -2.234 -0.891 H10  9LS 45 
9LS H11  H11 H  0 1 N N N 22.343 20.774 6.876 -0.077 -3.095 -0.389 H11  9LS 46 
9LS H12  H12 H  0 1 N N N 20.878 19.750 6.703 0.115  -2.736 -2.122 H12  9LS 47 
9LS H13  H13 H  0 1 N N N 23.060 19.483 8.840 2.151  -4.182 -0.367 H13  9LS 48 
9LS H14  H14 H  0 1 N N N 21.385 20.084 9.083 1.077  -4.951 -1.559 H14  9LS 49 
9LS H15  H15 H  0 1 N N N 20.469 17.893 8.500 3.333  -4.566 -2.513 H15  9LS 50 
9LS H16  H16 H  0 1 N N N 21.682 17.712 9.812 2.106  -3.595 -3.362 H16  9LS 51 
9LS H17  H17 H  0 1 N N N 21.904 15.958 8.026 3.929  -2.599 -1.125 H17  9LS 52 
9LS H18  H18 H  0 1 N N N 23.379 16.967 8.202 4.121  -2.241 -2.858 H18  9LS 53 
9LS H19  H19 H  0 1 N N N 21.201 17.246 6.063 1.893  -1.153 -2.880 H19  9LS 54 
9LS H20  H20 H  0 1 N N N 22.877 16.647 5.821 2.967  -0.384 -1.688 H20  9LS 55 
9LS H21  H21 H  0 1 N N N 21.131 19.248 1.239 -1.145 0.683  -1.611 H21  9LS 56 
9LS H22  H22 H  0 1 N N N 18.776 19.929 0.949 -3.463 1.331  -2.119 H22  9LS 57 
9LS H23  H23 H  0 1 N N N 19.940 16.337 4.136 -0.721 4.181  0.833  H23  9LS 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9LS C32  C28 DOUB Y N 1  
9LS C32  C31 SING Y N 2  
9LS C28  C16 SING Y N 3  
9LS C31  C27 DOUB Y N 4  
9LS C25  C18 DOUB Y N 5  
9LS C25  C22 SING Y N 6  
9LS C16  F23 SING N N 7  
9LS C16  C14 DOUB Y N 8  
9LS C18  C12 SING Y N 9  
9LS C27  C14 SING Y N 10 
9LS C14  N9  SING N N 11 
9LS N3   C5  SING Y N 12 
9LS N3   C2  DOUB Y N 13 
9LS CL26 C22 SING N N 14 
9LS C10  C5  DOUB Y N 15 
9LS C10  C13 SING Y N 16 
9LS C22  C24 DOUB Y N 17 
9LS F21  C13 SING N N 18 
9LS C5   C4  SING Y N 19 
9LS C12  C2  SING N N 20 
9LS C12  C19 DOUB Y N 21 
9LS C2   N1  SING Y N 22 
9LS N9   C6  SING N N 23 
9LS C13  C11 DOUB Y N 24 
9LS C24  C19 SING Y N 25 
9LS C4   N1  SING Y N 26 
9LS C4   C8  DOUB Y N 27 
9LS N1   C7  SING N N 28 
9LS C11  C8  SING Y N 29 
9LS C11  F20 SING N N 30 
9LS C6   C7  SING N N 31 
9LS C6   O15 DOUB N N 32 
9LS C7   C17 SING N N 33 
9LS C17  C30 SING N N 34 
9LS C17  C29 SING N N 35 
9LS C30  C34 SING N N 36 
9LS C29  C33 SING N N 37 
9LS C34  C35 SING N N 38 
9LS C33  C35 SING N N 39 
9LS C7   H1  SING N N 40 
9LS C8   H2  SING N N 41 
9LS C10  H3  SING N N 42 
9LS C17  H4  SING N N 43 
9LS C24  H5  SING N N 44 
9LS C28  H6  SING N N 45 
9LS C32  H7  SING N N 46 
9LS C31  H8  SING N N 47 
9LS C27  H9  SING N N 48 
9LS N9   H10 SING N N 49 
9LS C29  H11 SING N N 50 
9LS C29  H12 SING N N 51 
9LS C33  H13 SING N N 52 
9LS C33  H14 SING N N 53 
9LS C35  H15 SING N N 54 
9LS C35  H16 SING N N 55 
9LS C34  H17 SING N N 56 
9LS C34  H18 SING N N 57 
9LS C30  H19 SING N N 58 
9LS C30  H20 SING N N 59 
9LS C18  H21 SING N N 60 
9LS C25  H22 SING N N 61 
9LS C19  H23 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9LS SMILES           ACDLabs              12.01 "n3(C(C(=O)Nc1c(cccc1)F)C2CCCCC2)c5cc(c(cc5nc3c4ccc(cc4)Cl)F)F"                                                                                                                       
9LS InChI            InChI                1.03  "InChI=1S/C27H23ClF3N3O/c28-18-12-10-17(11-13-18)26-32-23-14-20(30)21(31)15-24(23)34(26)25(16-6-2-1-3-7-16)27(35)33-22-9-5-4-8-19(22)29/h4-5,8-16,25H,1-3,6-7H2,(H,33,35)/t25-/m0/s1" 
9LS InChIKey         InChI                1.03  JBLFHKBJHMUDCM-VWLOTQADSA-N                                                                                                                                                           
9LS SMILES_CANONICAL CACTVS               3.385 "Fc1cc2nc(n([C@@H](C3CCCCC3)C(=O)Nc4ccccc4F)c2cc1F)c5ccc(Cl)cc5"                                                                                                                      
9LS SMILES           CACTVS               3.385 "Fc1cc2nc(n([CH](C3CCCCC3)C(=O)Nc4ccccc4F)c2cc1F)c5ccc(Cl)cc5"                                                                                                                        
9LS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)NC(=O)[C@H](C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F)F"                                                                                                                   
9LS SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)NC(=O)C(C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F)F"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9LS "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-(2-fluorophenyl)acetamide"          
9LS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[2-(4-chlorophenyl)-5,6-bis(fluoranyl)benzimidazol-1-yl]-2-cyclohexyl-~{N}-(2-fluorophenyl)ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9LS "Create component" 2017-05-19 RCSB 
9LS "Initial release"  2017-07-05 RCSB 
# 
