data_9MS
# 
_chem_comp.id                                    9MS 
_chem_comp.name                                  "(2S)-2-{2-[(4-chloro-2-methylphenoxy)methyl]-6-fluoro-1H-benzimidazol-1-yl}-N,2-dicyclohexylacetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H35 Cl F N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-19 
_chem_comp.pdbx_modified_date                    2017-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        512.059 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9MS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Q16 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9MS C4   C1  C  0 1 Y N N 23.636 -9.315  138.077 3.470  -0.784 0.594  C4   9MS 1  
9MS C5   C2  C  0 1 Y N N 24.291 -9.160  136.860 3.455  -2.165 0.850  C5   9MS 2  
9MS C6   C3  C  0 1 Y N N 24.605 -7.881  136.396 4.582  -2.773 1.410  C6   9MS 3  
9MS C10  C4  C  0 1 N N S 22.817 -11.404 139.399 1.778  0.837  -0.387 C10  9MS 4  
9MS C15  C5  C  0 1 N N N 23.164 -12.508 141.698 1.097  2.201  -2.366 C15  9MS 5  
9MS C17  C6  C  0 1 N N N 16.815 -11.155 138.054 -3.527 2.990  1.337  C17  9MS 6  
9MS C20  C7  C  0 1 N N N 17.549 -8.837  137.451 -2.148 4.820  2.333  C20  9MS 7  
9MS C21  C8  C  0 1 N N N 19.031 -9.269  137.549 -0.962 4.401  1.462  C21  9MS 8  
9MS C22  C9  C  0 1 N N N 19.207 -10.470 138.508 -1.034 2.897  1.191  C22  9MS 9  
9MS C24  C10 C  0 1 N N N 25.428 -12.516 142.836 1.970  1.630  -4.637 C24  9MS 10 
9MS C26  C11 C  0 1 N N N 25.131 -11.464 140.497 2.651  0.266  -2.657 C26  9MS 11 
9MS C28  C12 C  0 1 Y N N 22.111 -15.341 136.735 -2.518 -1.989 -1.078 C28  9MS 12 
9MS C1   C13 C  0 1 Y N N 24.262 -6.770  137.164 5.686  -2.024 1.702  C1   9MS 13 
9MS C2   C14 C  0 1 Y N N 23.606 -6.977  138.379 5.702  -0.658 1.449  C2   9MS 14 
9MS C3   C15 C  0 1 Y N N 23.278 -8.226  138.867 4.601  -0.037 0.892  C3   9MS 15 
9MS N7   N1  N  0 1 Y N N 24.534 -10.393 136.270 2.239  -2.627 0.459  N7   9MS 16 
9MS C9   C16 C  0 1 Y N N 24.042 -11.279 137.104 1.527  -1.644 -0.008 C9   9MS 17 
9MS N8   N2  N  0 1 Y N N 23.476 -10.711 138.238 2.237  -0.484 0.051  N8   9MS 18 
9MS C11  C17 C  0 1 N N N 21.375 -10.871 139.591 0.548  1.225  0.393  C11  9MS 19 
9MS O12  O1  O  0 1 N N N 20.993 -10.430 140.675 -0.039 0.394  1.053  O12  9MS 20 
9MS N13  N3  N  0 1 N N N 20.592 -10.926 138.510 0.101  2.496  0.356  N13  9MS 21 
9MS C16  C18 C  0 1 N N N 18.275 -11.620 138.135 -2.341 2.572  0.465  C16  9MS 22 
9MS C19  C19 C  0 1 N N N 16.656 -10.008 137.067 -3.455 4.495  1.607  C19  9MS 23 
9MS C27  C20 C  0 1 N N N 23.615 -11.362 140.722 1.443  0.792  -1.879 C27  9MS 24 
9MS C23  C21 C  0 1 N N N 23.914 -12.450 143.039 0.762  2.156  -3.859 C23  9MS 25 
9MS C25  C22 C  0 1 N N N 25.918 -11.416 141.846 2.316  0.222  -4.149 C25  9MS 26 
9MS C33  C23 C  0 1 N N N 24.114 -12.744 136.818 0.122  -1.771 -0.538 C33  9MS 27 
9MS O30  O2  O  0 1 N N N 23.358 -13.496 137.754 -0.799 -1.790 0.555  O30  9MS 28 
9MS C14  C24 C  0 1 Y N N 23.174 -14.855 137.496 -2.118 -1.901 0.248  C14  9MS 29 
9MS C31  C25 C  0 1 Y N N 21.987 -16.709 136.517 -3.860 -2.095 -1.388 C31  9MS 30 
9MS C34  C26 C  0 1 Y N N 22.922 -17.567 137.060 -4.805 -2.113 -0.377 C34  9MS 31 
9MS C32  C27 C  0 1 Y N N 23.980 -17.102 137.815 -4.408 -2.025 0.945  C32  9MS 32 
9MS C29  C28 C  0 1 Y N N 24.127 -15.736 138.049 -3.067 -1.925 1.260  C29  9MS 33 
9MS C36  C29 C  0 1 N N N 25.285 -15.229 138.876 -2.635 -1.829 2.700  C36  9MS 34 
9MS CL35 CL1 CL 0 0 N N N 22.767 -19.280 136.788 -6.491 -2.246 -0.770 CL35 9MS 35 
9MS F18  F1  F  0 1 N N N 23.274 -5.891  139.123 6.803  0.067  1.745  F18  9MS 36 
9MS H1   H1  H  0 1 N N N 25.110 -7.754  135.450 4.580  -3.834 1.611  H1   9MS 37 
9MS H2   H2  H  0 1 N N N 22.722 -12.465 139.126 2.565  1.571  -0.213 H2   9MS 38 
9MS H3   H3  H  0 1 N N N 22.085 -12.408 141.890 0.237  2.576  -1.812 H3   9MS 39 
9MS H4   H4  H  0 1 N N N 23.363 -13.479 141.221 1.949  2.861  -2.205 H4   9MS 40 
9MS H5   H5  H  0 1 N N N 16.490 -10.819 139.050 -4.458 2.758  0.819  H5   9MS 41 
9MS H6   H6  H  0 1 N N N 16.188 -11.998 137.728 -3.492 2.449  2.282  H6   9MS 42 
9MS H7   H7  H  0 1 N N N 17.455 -8.050  136.689 -2.113 4.279  3.279  H7   9MS 43 
9MS H8   H8  H  0 1 N N N 17.225 -8.444  138.426 -2.097 5.892  2.526  H8   9MS 44 
9MS H9   H9  H  0 1 N N N 19.387 -9.555  136.548 -0.997 4.943  0.516  H9   9MS 45 
9MS H10  H10 H  0 1 N N N 19.626 -8.423  137.922 -0.032 4.633  1.979  H10  9MS 46 
9MS H11  H11 H  0 1 N N N 18.942 -10.132 139.521 -0.999 2.356  2.136  H11  9MS 47 
9MS H12  H12 H  0 1 N N N 25.692 -13.504 142.432 1.731  1.598  -5.700 H12  9MS 48 
9MS H13  H13 H  0 1 N N N 25.926 -12.372 143.806 2.822  2.290  -4.475 H13  9MS 49 
9MS H14  H14 H  0 1 N N N 25.353 -12.413 139.988 3.503  0.926  -2.496 H14  9MS 50 
9MS H15  H15 H  0 1 N N N 25.455 -10.624 139.865 2.898  -0.737 -2.310 H15  9MS 51 
9MS H16  H16 H  0 1 N N N 21.387 -14.658 136.317 -1.781 -1.971 -1.867 H16  9MS 52 
9MS H17  H17 H  0 1 N N N 24.498 -5.771  136.827 6.555  -2.498 2.135  H17  9MS 53 
9MS H18  H18 H  0 1 N N N 22.770 -8.352  139.812 4.620  1.024  0.692  H18  9MS 54 
9MS H19  H19 H  0 1 N N N 20.973 -11.297 137.663 0.531  3.145  -0.222 H19  9MS 55 
9MS H20  H20 H  0 1 N N N 18.357 -12.409 138.897 -2.392 1.500  0.272  H20  9MS 56 
9MS H21  H21 H  0 1 N N N 18.577 -12.022 137.157 -2.376 3.113  -0.481 H21  9MS 57 
9MS H22  H22 H  0 1 N N N 15.607 -9.676  137.065 -3.490 5.036  0.661  H22  9MS 58 
9MS H23  H23 H  0 1 N N N 16.932 -10.357 136.061 -4.300 4.793  2.228  H23  9MS 59 
9MS H24  H24 H  0 1 N N N 23.406 -10.401 141.215 0.591  0.132  -2.041 H24  9MS 60 
9MS H25  H25 H  0 1 N N N 23.662 -11.509 143.549 -0.090 1.496  -4.020 H25  9MS 61 
9MS H26  H26 H  0 1 N N N 23.599 -13.300 143.662 0.515  3.159  -4.206 H26  9MS 62 
9MS H27  H27 H  0 1 N N N 26.988 -11.571 141.641 1.464  -0.439 -4.311 H27  9MS 63 
9MS H28  H28 H  0 1 N N N 25.773 -10.429 142.309 3.177  -0.153 -4.704 H28  9MS 64 
9MS H29  H29 H  0 1 N N N 23.720 -12.931 135.808 -0.100 -0.923 -1.186 H29  9MS 65 
9MS H30  H30 H  0 1 N N N 25.165 -13.066 136.867 0.030  -2.696 -1.106 H30  9MS 66 
9MS H31  H31 H  0 1 N N N 21.168 -17.096 135.929 -4.171 -2.164 -2.420 H31  9MS 67 
9MS H32  H32 H  0 1 N N N 24.696 -17.799 138.226 -5.148 -2.039 1.732  H32  9MS 68 
9MS H33  H33 H  0 1 N N N 24.991 -15.190 139.935 -2.606 -0.782 3.002  H33  9MS 69 
9MS H34  H34 H  0 1 N N N 26.144 -15.906 138.759 -3.344 -2.368 3.328  H34  9MS 70 
9MS H35  H35 H  0 1 N N N 25.564 -14.221 138.536 -1.644 -2.268 2.812  H35  9MS 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9MS N7   C5  SING Y N 1  
9MS N7   C9  DOUB Y N 2  
9MS C6   C5  DOUB Y N 3  
9MS C6   C1  SING Y N 4  
9MS C31  C28 DOUB Y N 5  
9MS C31  C34 SING Y N 6  
9MS C28  C14 SING Y N 7  
9MS CL35 C34 SING N N 8  
9MS C33  C9  SING N N 9  
9MS C33  O30 SING N N 10 
9MS C5   C4  SING Y N 11 
9MS C34  C32 DOUB Y N 12 
9MS C19  C20 SING N N 13 
9MS C19  C17 SING N N 14 
9MS C9   N8  SING Y N 15 
9MS C1   C2  DOUB Y N 16 
9MS C20  C21 SING N N 17 
9MS C14  O30 SING N N 18 
9MS C14  C29 DOUB Y N 19 
9MS C21  C22 SING N N 20 
9MS C32  C29 SING Y N 21 
9MS C29  C36 SING N N 22 
9MS C17  C16 SING N N 23 
9MS C4   N8  SING Y N 24 
9MS C4   C3  DOUB Y N 25 
9MS C16  C22 SING N N 26 
9MS N8   C10 SING N N 27 
9MS C2   C3  SING Y N 28 
9MS C2   F18 SING N N 29 
9MS C22  N13 SING N N 30 
9MS N13  C11 SING N N 31 
9MS C10  C11 SING N N 32 
9MS C10  C27 SING N N 33 
9MS C11  O12 DOUB N N 34 
9MS C26  C27 SING N N 35 
9MS C26  C25 SING N N 36 
9MS C27  C15 SING N N 37 
9MS C15  C23 SING N N 38 
9MS C25  C24 SING N N 39 
9MS C24  C23 SING N N 40 
9MS C6   H1  SING N N 41 
9MS C10  H2  SING N N 42 
9MS C15  H3  SING N N 43 
9MS C15  H4  SING N N 44 
9MS C17  H5  SING N N 45 
9MS C17  H6  SING N N 46 
9MS C20  H7  SING N N 47 
9MS C20  H8  SING N N 48 
9MS C21  H9  SING N N 49 
9MS C21  H10 SING N N 50 
9MS C22  H11 SING N N 51 
9MS C24  H12 SING N N 52 
9MS C24  H13 SING N N 53 
9MS C26  H14 SING N N 54 
9MS C26  H15 SING N N 55 
9MS C28  H16 SING N N 56 
9MS C1   H17 SING N N 57 
9MS C3   H18 SING N N 58 
9MS N13  H19 SING N N 59 
9MS C16  H20 SING N N 60 
9MS C16  H21 SING N N 61 
9MS C19  H22 SING N N 62 
9MS C19  H23 SING N N 63 
9MS C27  H24 SING N N 64 
9MS C23  H25 SING N N 65 
9MS C23  H26 SING N N 66 
9MS C25  H27 SING N N 67 
9MS C25  H28 SING N N 68 
9MS C33  H29 SING N N 69 
9MS C33  H30 SING N N 70 
9MS C31  H31 SING N N 71 
9MS C32  H32 SING N N 72 
9MS C36  H33 SING N N 73 
9MS C36  H34 SING N N 74 
9MS C36  H35 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9MS SMILES           ACDLabs              12.01 "c43n(C(C(=O)NC1CCCCC1)C2CCCCC2)c(nc3ccc(c4)F)COc5ccc(cc5C)Cl"                                                                                                                                  
9MS InChI            InChI                1.03  "InChI=1S/C29H35ClFN3O2/c1-19-16-21(30)12-15-26(19)36-18-27-33-24-14-13-22(31)17-25(24)34(27)28(20-8-4-2-5-9-20)29(35)32-23-10-6-3-7-11-23/h12-17,20,23,28H,2-11,18H2,1H3,(H,32,35)/t28-/m0/s1" 
9MS InChIKey         InChI                1.03  MAXDJYGVHNACQO-NDEPHWFRSA-N                                                                                                                                                                     
9MS SMILES_CANONICAL CACTVS               3.385 "Cc1cc(Cl)ccc1OCc2nc3ccc(F)cc3n2[C@@H](C4CCCCC4)C(=O)NC5CCCCC5"                                                                                                                                 
9MS SMILES           CACTVS               3.385 "Cc1cc(Cl)ccc1OCc2nc3ccc(F)cc3n2[CH](C4CCCCC4)C(=O)NC5CCCCC5"                                                                                                                                   
9MS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(ccc1OCc2nc3ccc(cc3n2[C@@H](C4CCCCC4)C(=O)NC5CCCCC5)F)Cl"                                                                                                                                 
9MS SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc(ccc1OCc2nc3ccc(cc3n2C(C4CCCCC4)C(=O)NC5CCCCC5)F)Cl"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9MS "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-{2-[(4-chloro-2-methylphenoxy)methyl]-6-fluoro-1H-benzimidazol-1-yl}-N,2-dicyclohexylacetamide"             
9MS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[2-[(4-chloranyl-2-methyl-phenoxy)methyl]-6-fluoranyl-benzimidazol-1-yl]-~{N},2-dicyclohexyl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9MS "Create component" 2017-05-19 RCSB 
9MS "Initial release"  2017-07-05 RCSB 
# 
