data_9SS
#

_chem_comp.id                                   9SS
_chem_comp.name                                 "(3R)-1-(2-{[1-(pyrimidin-5-yl)cyclopropyl]amino}pyrimidine-5-carbonyl)piperidine-3-carbonitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H19 N7 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-10-26
_chem_comp.pdbx_modified_date                   2022-01-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       349.390
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9SS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7SLX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9SS  N3   N1   N  0  1  N  N  N  17.082  -30.546  -29.464   2.932  -1.542   0.811  N3   9SS   1  
9SS  C4   C1   C  0  1  Y  N  N  17.679  -30.280  -28.255   1.574  -1.521   0.574  C4   9SS   2  
9SS  N2   N2   N  0  1  Y  N  N  16.808  -30.221  -27.164   1.113  -0.855  -0.477  N2   9SS   3  
9SS  C7   C2   C  0  1  N  N  N  17.382  -31.512  -31.772   3.846  -1.484  -1.581  C7   9SS   4  
9SS  C6   C3   C  0  1  N  N  N  18.698  -31.713  -31.061   5.021  -1.789  -0.650  C6   9SS   5  
9SS  C9   C4   C  0  1  Y  N  N  17.293  -28.126  -31.182   3.396   1.269   0.972  C9   9SS   6  
9SS  C13  C5   C  0  1  N  N  N  19.086  -28.231  -22.308  -2.354   0.935  -0.632  C13  9SS   7  
9SS  C8   C6   C  0  1  Y  N  N  18.238  -29.156  -31.081   4.097   0.542   0.023  C8   9SS   8  
9SS  N5   N3   N  0  1  Y  N  N  19.961  -27.563  -31.633   5.208   2.505  -0.585  N5   9SS   9  
9SS  C18  C7   C  0  1  N  N  N  15.602  -26.387  -23.799  -6.591   1.020   0.046  C18  9SS  10  
9SS  C16  C8   C  0  1  N  N  R  16.490  -27.459  -23.386  -5.148   0.861   0.293  C16  9SS  11  
9SS  C1   C9   C  0  1  Y  N  N  17.375  -29.888  -25.995  -0.179  -0.810  -0.738  C1   9SS  12  
9SS  C2   C10  C  0  1  Y  N  N  18.740  -29.612  -25.855  -1.068  -1.480   0.113  C2   9SS  13  
9SS  C3   C11  C  0  1  Y  N  N  19.545  -29.783  -26.991  -0.541  -2.172   1.211  C3   9SS  14  
9SS  N1   N4   N  0  1  Y  N  N  19.057  -30.102  -28.206   0.765  -2.172   1.401  N1   9SS  15  
9SS  C5   C12  C  0  1  N  N  N  17.824  -30.520  -30.702   3.853  -0.934  -0.153  C5   9SS  16  
9SS  N4   N5   N  0  1  Y  N  N  17.634  -26.854  -31.499   3.633   2.566   1.094  N4   9SS  17  
9SS  C10  C13  C  0  1  Y  N  N  18.963  -26.638  -31.718   4.522   3.164   0.328  C10  9SS  18  
9SS  C11  C14  C  0  1  Y  N  N  19.579  -28.818  -31.304   5.029   1.206  -0.760  C11  9SS  19  
9SS  C12  C15  C  0  1  N  N  N  19.351  -29.317  -24.552  -2.522  -1.457  -0.140  C12  9SS  20  
9SS  O1   O1   O  0  1  N  N  N  20.348  -29.922  -24.168  -3.167  -2.485  -0.069  O1   9SS  21  
9SS  N6   N6   N  0  1  N  N  N  18.756  -28.351  -23.738  -3.133  -0.297  -0.451  N6   9SS  22  
9SS  C14  C16  C  0  1  N  N  N  17.801  -28.398  -21.482  -2.935   2.024   0.276  C14  9SS  23  
9SS  C15  C17  C  0  1  N  N  N  16.779  -27.344  -21.886  -4.430   2.178  -0.012  C15  9SS  24  
9SS  C17  C18  C  0  1  N  N  N  17.798  -27.353  -24.205  -4.592  -0.241  -0.615  C17  9SS  25  
9SS  N7   N7   N  0  1  N  N  N  14.893  -25.538  -24.132  -7.704   1.142  -0.144  N7   9SS  26  
9SS  H3   H1   H  0  1  N  N  N  16.344  -29.879  -29.565   3.277  -1.956   1.617  H3   9SS  27  
9SS  H7   H2   H  0  1  N  N  N  17.369  -31.210  -32.830   4.017  -0.777  -2.393  H7   9SS  28  
9SS  H6   H3   H  0  1  N  N  N  16.542  -32.194  -31.575   3.155  -2.297  -1.804  H6   9SS  29  
9SS  H5   H4   H  0  1  N  N  N  18.815  -32.542  -30.347   5.104  -2.804  -0.260  H5   9SS  30  
9SS  H4   H5   H  0  1  N  N  N  19.643  -31.558  -31.602   5.966  -1.283  -0.850  H4   9SS  31  
9SS  H8   H6   H  0  1  N  N  N  16.253  -28.355  -31.000   2.662   0.785   1.600  H8   9SS  32  
9SS  H12  H7   H  0  1  N  N  N  19.808  -29.013  -22.029  -1.314   0.752  -0.363  H12  9SS  33  
9SS  H11  H8   H  0  1  N  N  N  19.524  -27.241  -22.112  -2.412   1.257  -1.672  H11  9SS  34  
9SS  H17  H9   H  0  1  N  N  N  16.024  -28.435  -23.587  -4.985   0.590   1.336  H17  9SS  35  
9SS  H1   H10  H  0  1  N  N  N  16.747  -29.830  -25.118  -0.547  -0.266  -1.596  H1   9SS  36  
9SS  H2   H11  H  0  1  N  N  N  20.612  -29.652  -26.886  -1.193  -2.700   1.891  H2   9SS  37  
9SS  H9   H12  H  0  1  N  N  N  19.254  -25.633  -31.986   4.691   4.225   0.448  H9   9SS  38  
9SS  H10  H13  H  0  1  N  N  N  20.333  -29.585  -31.210   5.594   0.672  -1.509  H10  9SS  39  
9SS  H14  H14  H  0  1  N  N  N  17.381  -29.399  -21.660  -2.792   1.742   1.319  H14  9SS  40  
9SS  H13  H15  H  0  1  N  N  N  18.038  -28.285  -20.414  -2.427   2.968   0.082  H13  9SS  41  
9SS  H15  H16  H  0  1  N  N  N  17.178  -26.343  -21.666  -4.573   2.435  -1.061  H15  9SS  42  
9SS  H16  H17  H  0  1  N  N  N  15.848  -27.500  -21.321  -4.841   2.969   0.616  H16  9SS  43  
9SS  H19  H18  H  0  1  N  N  N  18.227  -26.348  -24.079  -5.029  -1.199  -0.335  H19  9SS  44  
9SS  H18  H19  H  0  1  N  N  N  17.578  -27.527  -25.269  -4.835  -0.015  -1.653  H18  9SS  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9SS  C7   C6   SING  N  N   1  
9SS  C7   C5   SING  N  N   2  
9SS  C10  N5   DOUB  Y  N   3  
9SS  C10  N4   SING  Y  N   4  
9SS  N5   C11  SING  Y  N   5  
9SS  N4   C9   DOUB  Y  N   6  
9SS  C11  C8   DOUB  Y  N   7  
9SS  C9   C8   SING  Y  N   8  
9SS  C8   C5   SING  N  N   9  
9SS  C6   C5   SING  N  N  10  
9SS  C5   N3   SING  N  N  11  
9SS  N3   C4   SING  N  N  12  
9SS  C4   N1   DOUB  Y  N  13  
9SS  C4   N2   SING  Y  N  14  
9SS  N1   C3   SING  Y  N  15  
9SS  N2   C1   DOUB  Y  N  16  
9SS  C3   C2   DOUB  Y  N  17  
9SS  C1   C2   SING  Y  N  18  
9SS  C2   C12  SING  N  N  19  
9SS  C12  O1   DOUB  N  N  20  
9SS  C12  N6   SING  N  N  21  
9SS  C17  N6   SING  N  N  22  
9SS  C17  C16  SING  N  N  23  
9SS  N7   C18  TRIP  N  N  24  
9SS  C18  C16  SING  N  N  25  
9SS  N6   C13  SING  N  N  26  
9SS  C16  C15  SING  N  N  27  
9SS  C13  C14  SING  N  N  28  
9SS  C15  C14  SING  N  N  29  
9SS  N3   H3   SING  N  N  30  
9SS  C7   H7   SING  N  N  31  
9SS  C7   H6   SING  N  N  32  
9SS  C6   H5   SING  N  N  33  
9SS  C6   H4   SING  N  N  34  
9SS  C9   H8   SING  N  N  35  
9SS  C13  H12  SING  N  N  36  
9SS  C13  H11  SING  N  N  37  
9SS  C16  H17  SING  N  N  38  
9SS  C1   H1   SING  N  N  39  
9SS  C3   H2   SING  N  N  40  
9SS  C10  H9   SING  N  N  41  
9SS  C11  H10  SING  N  N  42  
9SS  C14  H14  SING  N  N  43  
9SS  C14  H13  SING  N  N  44  
9SS  C15  H15  SING  N  N  45  
9SS  C15  H16  SING  N  N  46  
9SS  C17  H19  SING  N  N  47  
9SS  C17  H18  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9SS  SMILES            ACDLabs               12.01  "O=C(c1cnc(NC2(CC2)c2cncnc2)nc1)N1CCCC(C#N)C1"  
9SS  InChI             InChI                 1.03   "InChI=1S/C18H19N7O/c19-6-13-2-1-5-25(11-13)16(26)14-7-22-17(23-8-14)24-18(3-4-18)15-9-20-12-21-10-15/h7-10,12-13H,1-5,11H2,(H,22,23,24)/t13-/m0/s1"  
9SS  InChIKey          InChI                 1.03   CDTXEVWHMGPGKZ-ZDUSSCGKSA-N  
9SS  SMILES_CANONICAL  CACTVS                3.385  "O=C(N1CCC[C@H](C1)C#N)c2cnc(NC3(CC3)c4cncnc4)nc2"  
9SS  SMILES            CACTVS                3.385  "O=C(N1CCC[CH](C1)C#N)c2cnc(NC3(CC3)c4cncnc4)nc2"  
9SS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c(cnc(n1)NC2(CC2)c3cncnc3)C(=O)N4CCC[C@H](C4)C#N"  
9SS  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c(cnc(n1)NC2(CC2)c3cncnc3)C(=O)N4CCCC(C4)C#N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9SS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R)-1-(2-{[1-(pyrimidin-5-yl)cyclopropyl]amino}pyrimidine-5-carbonyl)piperidine-3-carbonitrile"  
9SS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{R})-1-[2-[(1-pyrimidin-5-ylcyclopropyl)amino]pyrimidin-5-yl]carbonylpiperidine-3-carbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9SS  "Create component"  2021-10-26  RCSB  
9SS  "Initial release"   2022-01-12  RCSB  
##
