data_GSS
#

_chem_comp.id                                   GSS
_chem_comp.name                                 "2'-DEOXY-N2-(S)STYRENE OXIDE GUANOSINE MONOPHOSPHATE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C18 H22 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       467.370
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    GSS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1AP1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GSS  P       P       P  0  1  N  N  N   5.901  7.190  13.458  -0.801  -0.902  -6.689  P       GSS   1  
GSS  OP1     O1P     O  0  1  N  N  N   6.373  8.579  13.632   0.647  -0.717  -6.927  OP1     GSS   2  
GSS  OP2     O2P     O  0  1  N  N  N   6.517  6.088  14.230  -1.249  -2.359  -7.207  OP2     GSS   3  
GSS  OP3     O3P     O  0  1  N  Y  N   5.981  6.802  11.898  -1.624   0.227  -7.488  OP3     GSS   4  
GSS  "O5'"   O5*     O  0  1  N  N  N   4.320  7.194  13.712  -1.107  -0.775  -5.113  "O5'"   GSS   5  
GSS  "C5'"   C5*     C  0  1  N  N  N   3.533  8.220  13.103  -0.690   0.532  -4.716  "C5'"   GSS   6  
GSS  "C4'"   C4*     C  0  1  N  N  R   2.074  8.136  13.518  -0.954   0.719  -3.221  "C4'"   GSS   7  
GSS  "O4'"   O4*     O  0  1  N  N  N   1.482  6.900  13.061  -0.124  -0.168  -2.438  "O4'"   GSS   8  
GSS  "C3'"   C3*     C  0  1  N  N  S   1.948  8.192  15.034  -0.511   2.131  -2.760  "C3'"   GSS   9  
GSS  "O3'"   O3*     O  0  1  N  N  N   1.098  9.291  15.418  -1.554   3.086  -2.967  "O3'"   GSS  10  
GSS  "C2'"   C2*     C  0  1  N  N  N   1.375  6.850  15.439  -0.253   1.914  -1.249  "C2'"   GSS  11  
GSS  "C1'"   C1*     C  0  1  N  N  R   0.865  6.205  14.165  -0.041   0.393  -1.118  "C1'"   GSS  12  
GSS  N9      N9      N  0  1  Y  N  N   1.170  4.757  14.112   1.279   0.122  -0.544  N9      GSS  13  
GSS  C8      C8      C  0  1  Y  N  N   2.369  4.120  14.105   2.441  -0.048  -1.238  C8      GSS  14  
GSS  N7      N7      N  0  1  Y  N  N   2.365  2.836  13.952   3.420  -0.272  -0.411  N7      GSS  15  
GSS  C5      C5      C  0  1  Y  N  N   0.999  2.563  13.849   2.946  -0.258   0.858  C5      GSS  16  
GSS  C6      C6      C  0  1  N  N  N   0.329  1.322  13.665   3.536  -0.437   2.132  C6      GSS  17  
GSS  O6      O6      O  0  1  N  N  N   0.817  0.200  13.543   4.730  -0.659   2.242  O6      GSS  18  
GSS  N1      N1      N  0  1  N  N  N  -1.049  1.488  13.618   2.744  -0.350   3.223  N1      GSS  19  
GSS  C2      C2      C  0  1  N  N  N  -1.711  2.693  13.735   1.410  -0.107   3.088  C2      GSS  20  
GSS  N2      N2      N  0  1  N  N  N  -3.048  2.631  13.717   0.629  -0.029   4.214  N2      GSS  21  
GSS  N3      N3      N  0  1  N  N  N  -1.088  3.867  13.903   0.850   0.060   1.911  N3      GSS  22  
GSS  C4      C4      C  0  1  Y  N  N   0.258  3.733  13.952   1.572  -0.006   0.786  C4      GSS  23  
GSS  CA      CA      C  0  1  N  N  S  -3.868  3.862  13.926  -0.805   0.236   4.094  CA      GSS  24  
GSS  CB      CB      C  0  1  N  N  N  -5.343  3.474  14.056  -1.049   1.747   4.132  CB      GSS  25  
GSS  OB      OB      O  0  1  N  N  N  -5.638  2.431  13.135  -0.568   2.275   5.370  OB      GSS  26  
GSS  CJ      CJ      C  0  1  Y  N  N  -3.694  4.801  12.754  -1.536  -0.418   5.237  CJ      GSS  27  
GSS  CO      CO      C  0  1  Y  N  N  -3.369  4.294  11.492  -2.836  -0.857   5.066  CO      GSS  28  
GSS  "CO'"   "CO'"   C  0  1  Y  N  N  -3.855  6.179  12.933  -0.904  -0.586   6.455  "CO'"   GSS  29  
GSS  CM      CM      C  0  1  Y  N  N  -3.205  5.162  10.408  -3.506  -1.458   6.115  CM      GSS  30  
GSS  "CM'"   "CM'"   C  0  1  Y  N  N  -3.691  7.049  11.849  -1.576  -1.184   7.505  "CM'"   GSS  31  
GSS  CP      CP      C  0  1  Y  N  N  -3.366  6.540  10.586  -2.876  -1.621   7.335  CP      GSS  32  
GSS  HOP2    2HOP    H  0  0  N  N  N   6.213  5.194  14.118  -1.049  -2.393  -8.153  HOP2    GSS  33  
GSS  HOP3    3HOP    H  0  0  N  N  N   5.677  5.908  11.786  -2.561   0.071  -7.307  HOP3    GSS  34  
GSS  "H5'"   1H5*    H  0  1  N  N  N   3.604  8.121  12.019  -1.249   1.279  -5.280  "H5'"   GSS  35  
GSS  "H5''"  2H5*    H  0  0  N  N  N   3.932  9.193  13.396   0.374   0.650  -4.914  "H5''"  GSS  36  
GSS  "H4'"   H4*     H  0  1  N  N  N   1.527  8.976  13.082  -2.008   0.555  -2.995  "H4'"   GSS  37  
GSS  "H3'"   H3*     H  0  1  N  N  N   2.937  8.312  15.479   0.400   2.438  -3.271  "H3'"   GSS  38  
GSS  "HO3'"  *HO3    H  0  0  N  Y  N   1.019  9.325  16.364  -1.253   3.918  -2.577  "HO3'"  GSS  39  
GSS  "H2'"   1H2*    H  0  1  N  N  N   2.157  6.236  15.884  -1.117   2.230  -0.665  "H2'"   GSS  40  
GSS  "H2''"  2H2*    H  0  0  N  N  N   0.555  6.978  16.143   0.640   2.452  -0.934  "H2''"  GSS  41  
GSS  "H1'"   H1*     H  0  1  N  N  N  -0.214  6.342  14.109  -0.816  -0.035  -0.483  "H1'"   GSS  42  
GSS  H8      H8      H  0  1  N  N  N   3.301  4.669  14.236   2.535  -0.004  -2.313  H8      GSS  43  
GSS  H1      H1      H  0  1  N  N  N  -1.588  0.645  13.482   3.126  -0.469   4.107  H1      GSS  44  
GSS  H2      H2      H  0  1  N  N  N  -3.506  1.741  13.583   1.028  -0.151   5.090  H2      GSS  45  
GSS  HA      HA      H  0  1  N  N  N  -3.547  4.355  14.833  -1.172  -0.166   3.150  HA      GSS  46  
GSS  HB1     1HB     H  0  1  N  N  N  -5.962  4.338  13.849  -2.117   1.945   4.042  HB1     GSS  47  
GSS  HB2     2HB     H  0  1  N  N  N  -5.540  3.129  15.057  -0.520   2.221   3.305  HB2     GSS  48  
GSS  HB      HB      H  0  1  N  N  N  -5.609  2.801  12.250  -0.741   3.227   5.353  HB      GSS  49  
GSS  HO      HO      H  0  1  N  N  N  -3.242  3.230  11.356  -3.328  -0.729   4.113  HO      GSS  50  
GSS  "HO'"   "HO'"   H  0  1  N  N  N  -4.106  6.572  13.907   0.111  -0.244   6.589  "HO'"   GSS  51  
GSS  HM      HM      H  0  1  N  N  N  -2.955  4.769   9.433  -4.521  -1.800   5.982  HM      GSS  52  
GSS  "HM'"   "HM'"   H  0  1  N  N  N  -3.815  8.112  11.987  -1.084  -1.311   8.458  "HM'"   GSS  53  
GSS  HP      HP      H  0  1  N  N  N  -3.240  7.211   9.750  -3.400  -2.091   8.154  HP      GSS  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GSS  P      OP1     DOUB  N  N   1  
GSS  P      OP2     SING  N  N   2  
GSS  P      OP3     SING  N  N   3  
GSS  P      "O5'"   SING  N  N   4  
GSS  OP2    HOP2    SING  N  N   5  
GSS  OP3    HOP3    SING  N  N   6  
GSS  "O5'"  "C5'"   SING  N  N   7  
GSS  "C5'"  "C4'"   SING  N  N   8  
GSS  "C5'"  "H5'"   SING  N  N   9  
GSS  "C5'"  "H5''"  SING  N  N  10  
GSS  "C4'"  "O4'"   SING  N  N  11  
GSS  "C4'"  "C3'"   SING  N  N  12  
GSS  "C4'"  "H4'"   SING  N  N  13  
GSS  "O4'"  "C1'"   SING  N  N  14  
GSS  "C3'"  "O3'"   SING  N  N  15  
GSS  "C3'"  "C2'"   SING  N  N  16  
GSS  "C3'"  "H3'"   SING  N  N  17  
GSS  "O3'"  "HO3'"  SING  N  N  18  
GSS  "C2'"  "C1'"   SING  N  N  19  
GSS  "C2'"  "H2'"   SING  N  N  20  
GSS  "C2'"  "H2''"  SING  N  N  21  
GSS  "C1'"  N9      SING  N  N  22  
GSS  "C1'"  "H1'"   SING  N  N  23  
GSS  N9     C8      SING  Y  N  24  
GSS  N9     C4      SING  Y  N  25  
GSS  C8     N7      DOUB  Y  N  26  
GSS  C8     H8      SING  N  N  27  
GSS  N7     C5      SING  Y  N  28  
GSS  C5     C6      SING  N  N  29  
GSS  C5     C4      DOUB  Y  N  30  
GSS  C6     O6      DOUB  N  N  31  
GSS  C6     N1      SING  N  N  32  
GSS  N1     C2      SING  N  N  33  
GSS  N1     H1      SING  N  N  34  
GSS  C2     N2      SING  N  N  35  
GSS  C2     N3      DOUB  N  N  36  
GSS  N2     CA      SING  N  N  37  
GSS  N2     H2      SING  N  N  38  
GSS  N3     C4      SING  N  N  39  
GSS  CA     CB      SING  N  N  40  
GSS  CA     CJ      SING  N  N  41  
GSS  CA     HA      SING  N  N  42  
GSS  CB     OB      SING  N  N  43  
GSS  CB     HB1     SING  N  N  44  
GSS  CB     HB2     SING  N  N  45  
GSS  OB     HB      SING  N  N  46  
GSS  CJ     CO      DOUB  Y  N  47  
GSS  CJ     "CO'"   SING  Y  N  48  
GSS  CO     CM      SING  Y  N  49  
GSS  CO     HO      SING  N  N  50  
GSS  "CO'"  "CM'"   DOUB  Y  N  51  
GSS  "CO'"  "HO'"   SING  N  N  52  
GSS  CM     CP      DOUB  Y  N  53  
GSS  CM     HM      SING  N  N  54  
GSS  "CM'"  CP      SING  Y  N  55  
GSS  "CM'"  "HM'"   SING  N  N  56  
GSS  CP     HP      SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GSS  SMILES            ACDLabs               10.04  "O=C2c3ncn(c3N=C(NC(c1ccccc1)CO)N2)C4OC(C(O)C4)COP(=O)(O)O"  
GSS  SMILES_CANONICAL  CACTVS                3.341  "OC[C@@H](NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c4ccccc4"  
GSS  SMILES            CACTVS                3.341  "OC[CH](NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c4ccccc4"  
GSS  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)[C@@H](CO)NC2=Nc3c(ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)C(=O)N2"  
GSS  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)C(CO)NC2=Nc3c(ncn3C4CC(C(O4)COP(=O)(O)O)O)C(=O)N2"  
GSS  InChI             InChI                 1.03   "InChI=1S/C18H22N5O8P/c24-7-11(10-4-2-1-3-5-10)20-18-21-16-15(17(26)22-18)19-9-23(16)14-6-12(25)13(31-14)8-30-32(27,28)29/h1-5,9,11-14,24-25H,6-8H2,(H2,27,28,29)(H2,20,21,22,26)/t11-,12+,13-,14-/m1/s1"  
GSS  InChIKey          InChI                 1.03   PJRDXCSKOSXVOB-XJFOESAGSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GSS  "SYSTEMATIC NAME"  ACDLabs               10.04  "2'-deoxy-N-[(1S)-2-hydroxy-1-phenylethyl]guanosine 5'-(dihydrogen phosphate)"  
GSS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,5R)-3-hydroxy-5-[2-[[(1S)-2-hydroxy-1-phenyl-ethyl]amino]-6-oxo-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GSS  "Create component"      1999-07-08  EBI   
GSS  "Modify descriptor"     2011-06-04  RCSB  
GSS  "Modify internal type"  2019-09-13  PDBE  
##
