data_RMS
#

_chem_comp.id                                   RMS
_chem_comp.name                                 "2-{[3-(piperidin-1-yl)propyl]sulfanyl}-6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H24 N4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       348.529
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RMS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VUZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RMS  C10  C1   C  0  1  N  N  N  20.964  -10.973  43.298   6.419   1.503  -0.463  C10  RMS   1  
RMS  C11  C2   C  0  1  N  N  N  20.740  -12.139  44.273   7.861   1.043  -0.694  C11  RMS   2  
RMS  C12  C3   C  0  1  N  N  N  19.919  -11.820  45.428   8.328   0.221   0.511  C12  RMS   3  
RMS  C13  C4   C  0  1  N  N  N  19.957  -10.425  45.817   7.381  -0.966   0.707  C13  RMS   4  
RMS  C19  C5   C  0  1  Y  N  N  21.263  -12.881  34.773  -4.690   0.729   0.146  C19  RMS   5  
RMS  C20  C6   C  0  1  Y  N  N  20.190  -13.076  33.840  -5.557  -0.271   0.100  C20  RMS   6  
RMS  C21  C7   C  0  1  N  N  N  20.557  -14.149  32.835  -6.987   0.255   0.196  C21  RMS   7  
RMS  C23  C8   C  0  1  N  N  N  22.396  -13.833  34.424  -5.427   2.061   0.286  C23  RMS   8  
RMS  N01  N1   N  0  1  N  N  N  22.985  -11.869  37.092  -2.184   2.470   0.185  N01  RMS   9  
RMS  C02  C9   C  0  1  Y  N  N  21.665  -11.334  36.821  -2.109   1.094   0.074  C02  RMS  10  
RMS  N03  N2   N  0  1  Y  N  N  21.159  -10.378  37.577  -0.935   0.488  -0.020  N03  RMS  11  
RMS  C04  C10  C  0  1  Y  N  N  19.948   -9.863  37.360  -0.851  -0.833  -0.126  C04  RMS  12  
RMS  S05  S1   S  0  1  N  N  N  19.323   -8.545  38.433   0.739  -1.581  -0.246  S05  RMS  13  
RMS  C06  C11  C  0  1  N  N  N  20.267   -8.465  40.018   1.786  -0.106  -0.171  C06  RMS  14  
RMS  C07  C12  C  0  1  N  N  N  19.444   -8.921  41.248   3.257  -0.519  -0.260  C07  RMS  15  
RMS  C08  C13  C  0  1  N  N  N  20.229   -9.011  42.577   4.142   0.727  -0.197  C08  RMS  16  
RMS  N09  N3   N  0  1  N  N  N  19.938   -9.943  43.321   5.553   0.331  -0.282  N09  RMS  17  
RMS  C14  C14  C  0  1  N  N  N  19.684   -9.441  44.660   5.953  -0.448   0.896  C14  RMS  18  
RMS  N15  N4   N  0  1  Y  N  N  19.181  -10.285  36.372  -1.923  -1.603  -0.144  N15  RMS  19  
RMS  C16  C15  C  0  1  Y  N  N  19.605  -11.253  35.550  -3.152  -1.074  -0.055  C16  RMS  20  
RMS  S17  S2   S  0  1  Y  N  N  18.924  -11.999  34.226  -4.737  -1.825  -0.054  S17  RMS  21  
RMS  C18  C16  C  0  1  Y  N  N  20.860  -11.805  35.755  -3.289   0.305   0.058  C18  RMS  22  
RMS  C22  C17  C  0  1  N  N  N  22.079  -14.251  32.978  -6.878   1.756  -0.140  C22  RMS  23  
RMS  H1   H1   H  0  1  N  N  N  21.010  -11.385  42.279   6.376   2.128   0.428  H1   RMS  24  
RMS  H2   H2   H  0  1  N  N  N  21.926  -10.501  43.547   6.079   2.076  -1.326  H2   RMS  25  
RMS  H3   H3   H  0  1  N  N  N  20.252  -12.957  43.722   7.908   0.429  -1.593  H3   RMS  26  
RMS  H4   H4   H  0  1  N  N  N  21.723  -12.476  44.635   8.506   1.913  -0.812  H4   RMS  27  
RMS  H5   H5   H  0  1  N  N  N  18.877  -12.085  45.194   9.339  -0.145   0.332  H5   RMS  28  
RMS  H6   H6   H  0  1  N  N  N  20.269  -12.425  46.278   8.318   0.846   1.404  H6   RMS  29  
RMS  H7   H7   H  0  1  N  N  N  20.954  -10.208  46.227   7.420  -1.612  -0.171  H7   RMS  30  
RMS  H8   H8   H  0  1  N  N  N  19.197  -10.263  46.595   7.683  -1.532   1.588  H8   RMS  31  
RMS  H9   H9   H  0  1  N  N  N  20.275  -13.848  31.815  -7.623  -0.251  -0.530  H9   RMS  32  
RMS  H10  H10  H  0  1  N  N  N  20.072  -15.105  33.083  -7.377   0.119   1.204  H10  RMS  33  
RMS  H11  H11  H  0  1  N  N  N  22.398  -14.705  35.094  -5.398   2.404   1.320  H11  RMS  34  
RMS  H12  H12  H  0  1  N  N  N  23.369  -13.324  34.482  -4.987   2.809  -0.373  H12  RMS  35  
RMS  H13  H13  H  0  1  N  N  N  23.377  -11.405  37.886  -1.372   3.001   0.195  H13  RMS  36  
RMS  H14  H14  H  0  1  N  N  N  22.915  -12.849  37.280  -3.049   2.905   0.252  H14  RMS  37  
RMS  H15  H15  H  0  1  N  N  N  21.151   -9.113  39.930   1.543   0.555  -1.003  H15  RMS  38  
RMS  H16  H16  H  0  1  N  N  N  20.589   -7.426  40.180   1.612   0.416   0.770  H16  RMS  39  
RMS  H17  H17  H  0  1  N  N  N  18.620   -8.206  41.389   3.500  -1.180   0.572  H17  RMS  40  
RMS  H18  H18  H  0  1  N  N  N  19.032   -9.917  41.030   3.431  -1.041  -1.201  H18  RMS  41  
RMS  H19  H19  H  0  1  N  N  N  21.297   -9.101  42.329   3.899   1.388  -1.029  H19  RMS  42  
RMS  H20  H20  H  0  1  N  N  N  20.059   -8.076  43.130   3.967   1.249   0.744  H20  RMS  43  
RMS  H22  H22  H  0  1  N  N  N  20.320   -8.557  44.814   5.275  -1.292   1.022  H22  RMS  44  
RMS  H23  H23  H  0  1  N  N  N  18.626   -9.145  44.713   5.912   0.186   1.782  H23  RMS  45  
RMS  H24  H24  H  0  1  N  N  N  22.412  -15.284  32.797  -7.021   1.929  -1.207  H24  RMS  46  
RMS  H25  H25  H  0  1  N  N  N  22.576  -13.575  32.267  -7.587   2.339   0.447  H25  RMS  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RMS  C21  C22  SING  N  N   1  
RMS  C21  C20  SING  N  N   2  
RMS  C22  C23  SING  N  N   3  
RMS  C20  S17  SING  Y  N   4  
RMS  C20  C19  DOUB  Y  N   5  
RMS  S17  C16  SING  Y  N   6  
RMS  C23  C19  SING  N  N   7  
RMS  C19  C18  SING  Y  N   8  
RMS  C16  C18  DOUB  Y  N   9  
RMS  C16  N15  SING  Y  N  10  
RMS  C18  C02  SING  Y  N  11  
RMS  N15  C04  DOUB  Y  N  12  
RMS  C02  N01  SING  N  N  13  
RMS  C02  N03  DOUB  Y  N  14  
RMS  C04  N03  SING  Y  N  15  
RMS  C04  S05  SING  N  N  16  
RMS  S05  C06  SING  N  N  17  
RMS  C06  C07  SING  N  N  18  
RMS  C07  C08  SING  N  N  19  
RMS  C08  N09  SING  N  N  20  
RMS  C10  N09  SING  N  N  21  
RMS  C10  C11  SING  N  N  22  
RMS  N09  C14  SING  N  N  23  
RMS  C11  C12  SING  N  N  24  
RMS  C14  C13  SING  N  N  25  
RMS  C12  C13  SING  N  N  26  
RMS  C10  H1   SING  N  N  27  
RMS  C10  H2   SING  N  N  28  
RMS  C11  H3   SING  N  N  29  
RMS  C11  H4   SING  N  N  30  
RMS  C12  H5   SING  N  N  31  
RMS  C12  H6   SING  N  N  32  
RMS  C13  H7   SING  N  N  33  
RMS  C13  H8   SING  N  N  34  
RMS  C21  H9   SING  N  N  35  
RMS  C21  H10  SING  N  N  36  
RMS  C23  H11  SING  N  N  37  
RMS  C23  H12  SING  N  N  38  
RMS  N01  H13  SING  N  N  39  
RMS  N01  H14  SING  N  N  40  
RMS  C06  H15  SING  N  N  41  
RMS  C06  H16  SING  N  N  42  
RMS  C07  H17  SING  N  N  43  
RMS  C07  H18  SING  N  N  44  
RMS  C08  H19  SING  N  N  45  
RMS  C08  H20  SING  N  N  46  
RMS  C14  H22  SING  N  N  47  
RMS  C14  H23  SING  N  N  48  
RMS  C22  H24  SING  N  N  49  
RMS  C22  H25  SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RMS  SMILES            ACDLabs               12.01  "C4N(CCCSc1nc(N)c2c3c(sc2n1)CCC3)CCCC4"  
RMS  InChI             InChI                 1.03   "InChI=1S/C17H24N4S2/c18-15-14-12-6-4-7-13(12)23-16(14)20-17(19-15)22-11-5-10-21-8-2-1-3-9-21/h1-11H2,(H2,18,19,20)"  
RMS  InChIKey          InChI                 1.03   LFHQZKLJPPVEJC-UHFFFAOYSA-N  
RMS  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(SCCCN2CCCCC2)nc3sc4CCCc4c13"  
RMS  SMILES            CACTVS                3.385  "Nc1nc(SCCCN2CCCCC2)nc3sc4CCCc4c13"  
RMS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1CCN(CC1)CCCSc2nc(c3c4c(sc3n2)CCC4)N"  
RMS  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CCN(CC1)CCCSc2nc(c3c4c(sc3n2)CCC4)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RMS  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-{[3-(piperidin-1-yl)propyl]sulfanyl}-6,7-dihydro-5H-cyclopenta[4,5]thieno[2,3-d]pyrimidin-4-amine"  
RMS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "10-(3-piperidin-1-ylpropylsulfanyl)-7-thia-9,11-diazatricyclo[6.4.0.0^{2,6}]dodeca-1(8),2(6),9,11-tetraen-12-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RMS  "Create component"  2020-02-17  RCSB  
RMS  "Initial release"   2020-06-03  RCSB  
##
