data_VMS
# 
_chem_comp.id                                    VMS 
_chem_comp.name                                  "5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C15 H23 N7 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-06-09 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.451 
_chem_comp.one_letter_code                       X 
_chem_comp.three_letter_code                     VMS 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VMS CG2    CG2  C 0 1 N N N 69.886 23.367 22.625 5.553  -1.831 1.354  CG2    VMS 1  
VMS CB     CB   C 0 1 N N N 71.139 24.228 22.442 4.753  -2.870 0.566  CB     VMS 2  
VMS CG1    CG1  C 0 1 N N N 70.837 25.413 21.522 4.754  -4.198 1.324  CG1    VMS 3  
VMS CA     CA   C 0 1 N N S 72.327 23.424 21.895 3.313  -2.381 0.395  CA     VMS 4  
VMS N      N    N 0 1 N N N 71.988 22.788 20.614 2.544  -3.378 -0.362 N      VMS 5  
VMS C      C    C 0 1 N N N 72.781 22.354 22.893 3.311  -1.073 -0.352 C      VMS 6  
VMS O      O    O 0 1 N N N 73.432 21.375 22.533 3.061  -1.052 -1.539 O      VMS 7  
VMS NAS    NAS  N 0 1 N N N 72.272 22.515 24.109 3.588  0.075  0.298  NAS    VMS 8  
VMS SBD    SBD  S 0 1 N N N 72.590 21.534 25.372 3.586  1.513  -0.524 SBD    VMS 9  
VMS OAZ    OAZ  O 0 1 N N N 71.636 20.390 25.539 3.854  2.513  0.449  OAZ    VMS 10 
VMS OBC    OBC  O 0 1 N N N 73.042 22.309 26.575 4.347  1.286  -1.702 OBC    VMS 11 
VMS "O5'"  O5*  O 0 1 N N N 73.801 20.742 24.956 2.161  1.766  -0.995 "O5'"  VMS 12 
VMS "C5'"  C5*  C 0 1 N N N 75.112 21.063 25.438 1.413  2.174  0.152  "C5'"  VMS 13 
VMS "C4'"  C4*  C 0 1 N N R 75.977 19.804 25.546 -0.037 2.445  -0.254 "C4'"  VMS 14 
VMS "O4'"  O4*  O 0 1 N N N 76.171 19.272 24.221 -0.670 1.219  -0.656 "O4'"  VMS 15 
VMS "C3'"  C3*  C 0 1 N N S 77.378 20.117 26.080 -0.824 2.998  0.950  "C3'"  VMS 16 
VMS "O3'"  O3*  O 0 1 N N N 78.012 18.918 26.539 -1.342 4.299  0.663  "O3'"  VMS 17 
VMS "C2'"  C2*  C 0 1 N N R 78.035 20.580 24.783 -1.981 1.983  1.140  "C2'"  VMS 18 
VMS "O2'"  O2*  O 0 1 N N N 79.459 20.539 24.906 -3.205 2.656  1.444  "O2'"  VMS 19 
VMS "C1'"  C1*  C 0 1 N N R 77.555 19.454 23.864 -2.053 1.307  -0.253 "C1'"  VMS 20 
VMS N9     N9   N 0 1 Y N N 77.686 19.861 22.445 -2.647 -0.029 -0.152 N9     VMS 21 
VMS C8     C8   C 0 1 Y N N 77.637 21.116 22.004 -1.975 -1.197 0.050  C8     VMS 22 
VMS N7     N7   N 0 1 Y N N 77.800 21.146 20.685 -2.813 -2.192 0.088  N7     VMS 23 
VMS C5     C5   C 0 1 Y N N 77.950 19.891 20.275 -4.073 -1.726 -0.087 C5     VMS 24 
VMS C4     C4   C 0 1 Y N N 77.871 19.069 21.391 -3.982 -0.332 -0.238 C4     VMS 25 
VMS N3     N3   N 0 1 Y N N 77.934 17.738 21.234 -5.094 0.370  -0.433 N3     VMS 26 
VMS C2     C2   C 0 1 Y N N 78.069 17.205 20.031 -6.266 -0.227 -0.474 C2     VMS 27 
VMS N1     N1   N 0 1 Y N N 78.154 17.962 18.949 -6.402 -1.533 -0.333 N1     VMS 28 
VMS C6     C6   C 0 1 Y N N 78.104 19.301 19.026 -5.347 -2.318 -0.139 C6     VMS 29 
VMS N6     N6   N 0 1 N N N 78.236 20.053 17.936 -5.499 -3.685 0.009  N6     VMS 30 
VMS HG21   1HG2 H 0 0 N N N 70.106 22.503 23.295 5.552  -0.884 0.813  HG21   VMS 31 
VMS HG22   2HG2 H 0 0 N N N 69.018 23.966 22.988 5.099  -1.690 2.334  HG22   VMS 32 
VMS HG23   3HG2 H 0 0 N N N 69.460 23.038 21.648 6.579  -2.179 1.475  HG23   VMS 33 
VMS HB     HB   H 0 1 N N N 71.430 24.603 23.450 5.207  -3.011 -0.415 HB     VMS 34 
VMS HG11   1HG1 H 0 0 N N N 71.749 26.039 21.388 4.300  -4.057 2.305  HG11   VMS 35 
VMS HG12   2HG1 H 0 0 N N N 70.411 25.084 20.545 4.184  -4.938 0.763  HG12   VMS 36 
VMS HG13   3HG1 H 0 0 N N N 69.969 26.012 21.885 5.780  -4.546 1.446  HG13   VMS 37 
VMS HA     HA   H 0 1 N N N 73.164 24.142 21.733 2.858  -2.240 1.376  HA     VMS 38 
VMS H      1HN  H 0 1 N N N 72.777 22.253 20.250 2.998  -3.476 -1.257 H      VMS 39 
VMS H2     2HN  H 0 1 N Y N 71.649 23.468 19.934 2.658  -4.258 0.119  H2     VMS 40 
VMS HAS    HAS  H 0 1 N N N 71.674 23.340 24.075 3.788  0.059  1.247  HAS    VMS 41 
VMS "H5'1" 1H5* H 0 0 N N N 75.600 21.846 24.812 1.438  1.383  0.902  "H5'1" VMS 42 
VMS "H5'2" 2H5* H 0 0 N N N 75.071 21.619 26.403 1.850  3.082  0.568  "H5'2" VMS 43 
VMS "H4'"  H4*  H 0 1 N N N 75.456 19.098 26.234 -0.063 3.163  -1.075 "H4'"  VMS 44 
VMS "H3'"  H3*  H 0 1 N N N 77.418 20.834 26.932 -0.192 3.027  1.837  "H3'"  VMS 45 
VMS "HO3'" H2   H 0 0 N N N 78.881 19.112 26.870 -1.872 4.563  1.427  "HO3'" VMS 46 
VMS H1     H1   H 0 1 N N N 77.790 21.617 24.456 -1.738 1.254  1.914  H1     VMS 47 
VMS "H2'"  H2*  H 0 1 N N N 79.868 20.827 24.098 -3.095 3.053  2.319  "H2'"  VMS 48 
VMS "H1'"  H1*  H 0 1 N N N 78.147 18.516 23.979 -2.618 1.925  -0.951 "H1'"  VMS 49 
VMS H8     H8   H 0 1 N N N 77.483 22.003 22.640 -0.904 -1.284 0.163  H8     VMS 50 
VMS H3     H3   H 0 1 N N N 78.111 16.107 19.928 -7.150 0.374  -0.630 H3     VMS 51 
VMS HN61   1HN6 H 0 0 N N N 78.349 19.620 17.019 -4.721 -4.247 0.150  HN61   VMS 52 
VMS HN62   2HN6 H 0 0 N N N 79.013 20.696 18.083 -6.384 -4.081 -0.029 HN62   VMS 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VMS CG2   CB     SING N N 1  
VMS CG2   HG21   SING N N 2  
VMS CG2   HG22   SING N N 3  
VMS CG2   HG23   SING N N 4  
VMS CB    CG1    SING N N 5  
VMS CB    CA     SING N N 6  
VMS CB    HB     SING N N 7  
VMS CG1   HG11   SING N N 8  
VMS CG1   HG12   SING N N 9  
VMS CG1   HG13   SING N N 10 
VMS CA    N      SING N N 11 
VMS CA    C      SING N N 12 
VMS CA    HA     SING N N 13 
VMS N     H      SING N N 14 
VMS N     H2     SING N N 15 
VMS C     O      DOUB N N 16 
VMS C     NAS    SING N N 17 
VMS NAS   SBD    SING N N 18 
VMS NAS   HAS    SING N N 19 
VMS SBD   OAZ    DOUB N N 20 
VMS SBD   OBC    DOUB N N 21 
VMS SBD   "O5'"  SING N N 22 
VMS "O5'" "C5'"  SING N N 23 
VMS "C5'" "C4'"  SING N N 24 
VMS "C5'" "H5'1" SING N N 25 
VMS "C5'" "H5'2" SING N N 26 
VMS "C4'" "O4'"  SING N N 27 
VMS "C4'" "C3'"  SING N N 28 
VMS "C4'" "H4'"  SING N N 29 
VMS "O4'" "C1'"  SING N N 30 
VMS "C3'" "O3'"  SING N N 31 
VMS "C3'" "C2'"  SING N N 32 
VMS "C3'" "H3'"  SING N N 33 
VMS "O3'" "HO3'" SING N N 34 
VMS "C2'" "O2'"  SING N N 35 
VMS "C2'" "C1'"  SING N N 36 
VMS "C2'" H1     SING N N 37 
VMS "O2'" "H2'"  SING N N 38 
VMS "C1'" N9     SING N N 39 
VMS "C1'" "H1'"  SING N N 40 
VMS N9    C8     SING Y N 41 
VMS N9    C4     SING Y N 42 
VMS C8    N7     DOUB Y N 43 
VMS C8    H8     SING N N 44 
VMS N7    C5     SING Y N 45 
VMS C5    C4     DOUB Y N 46 
VMS C5    C6     SING Y N 47 
VMS C4    N3     SING Y N 48 
VMS N3    C2     DOUB Y N 49 
VMS C2    N1     SING Y N 50 
VMS C2    H3     SING N N 51 
VMS N1    C6     DOUB Y N 52 
VMS C6    N6     SING N N 53 
VMS N6    HN61   SING N N 54 
VMS N6    HN62   SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VMS SMILES           ACDLabs              10.04 "O=C(NS(=O)(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C(N)C(C)C"                                                                                                                                         
VMS SMILES_CANONICAL CACTVS               3.341 "CC(C)[C@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                  
VMS SMILES           CACTVS               3.341 "CC(C)[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                        
VMS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)[C@@H](C(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N"                                                                                                                  
VMS SMILES           "OpenEye OEToolkits" 1.5.0 "CC(C)C(C(=O)NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N"                                                                                                                                         
VMS InChI            InChI                1.03  "InChI=1S/C15H23N7O7S/c1-6(2)8(16)14(25)21-30(26,27)28-3-7-10(23)11(24)15(29-7)22-5-20-9-12(17)18-4-19-13(9)22/h4-8,10-11,15,23-24H,3,16H2,1-2H3,(H,21,25)(H2,17,18,19)/t7-,8+,10-,11-,15-/m1/s1" 
VMS InChIKey         InChI                1.03  TXCZGHBHNXNXMA-CYUGOOACSA-N                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VMS "SYSTEMATIC NAME" ACDLabs              10.04 "5'-O-(L-valylsulfamoyl)adenosine"                                                                                  
VMS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl N-[(2S)-2-amino-3-methyl-butanoyl]sulfamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VMS "Create component"  2004-06-09 RCSB 
VMS "Modify descriptor" 2011-06-04 RCSB 
# 
